Prupe.1G068300_v2.0.a1

Defensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0003779
Physical Location & Seq
Forward (+)
4872571 .. 4874546
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G068300.1

Sequence Viewer

Length: 354 bp
ATGCTATTCGTACAACATTTATTTATCAATTTTACACTTTTTATATATAAAAAAGCGGACACATGCTTGGACTCTGTGGGTTCCTCCTGTGAAGGCATTGACTGCAACAAAGCATGCTTAGAGAAGCATCCTGGTAGCAAGGGAGCGTGTGACCAATCAAACTTGTGCACGTGCTTTTACGACTGTCCACCACAAAAGACATGCAACGATGGTTTGGGTCCTTGCACTCATGACTGCAAACGAGATTGTTGTGCTAAAAAATGTGCAAACAAACATCCTGCAGGTGTTGGAATTTGTGACGATAGGCTTTGCTTTCAATATGTCCCGTGTCAATGCGAGTATCCCTGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.91

Weight (kDa)

6.37

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 272
Acc36I ACCTGC 1 cut(s) 272
AciI CCGC 1 cut(s) 56
AcsI RAATTY 1 cut(s) 291
AcvI CACGTG 1 cut(s) 171
AfaI GTAC 1 cut(s) 12
AgsI TTSAA 1 cut(s) 317
AjnI CCWGG 1 cut(s) 130
Alw21I GWGCWC 1 cut(s) 170
Alw44I GTGCAC 1 cut(s) 166
ApaLI GTGCAC 1 cut(s) 166
ApoI RAATTY 1 cut(s) 291
AspS9I GGNCC 1 cut(s) 218
AvaII GGWCC 1 cut(s) 218
BaeGI GKGCMC 1 cut(s) 170
BbrPI CACGTG 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 170
BccI CCATC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 132
BciVI GTATCC 1 cut(s) 351
BfmI CTRYAG 1 cut(s) 279
BfuAI ACCTGC 1 cut(s) 272
BfuI GTATCC 1 cut(s) 351
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 82, 219
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 136
BsaAI YACGTR 1 cut(s) 171
BseBI CCWGG 1 cut(s) 132
BseGI GGATG 2 cut(s) 127, 274
BseSI GKGCMC 1 cut(s) 170
BsiHKAI GWGCWC 1 cut(s) 170
BslFI GGGAC 1 cut(s) 308
BsmFI GGGAC 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 170
BspACI CCGC 1 cut(s) 56
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 82, 219
BspMAI CTGCAG 1 cut(s) 283
BspMI ACCTGC 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 185
BstAPI GCANNNNNTGC 1 cut(s) 102
BstBAI YACGTR 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 118
BstF5I GGATG 2 cut(s) 127, 274
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 3 cut(s) 66, 117, 204
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 279
BstSLI GKGCMC 1 cut(s) 170
BsuI GTATCC 1 cut(s) 351
BtsCI GGATG 2 cut(s) 127, 274
BveI ACCTGC 1 cut(s) 272
Cac8I GCNNGC 1 cut(s) 115
CciI TCATGA 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 11
CviAII CATG 4 cut(s) 63, 114, 201, 230
CviJI RGCY 1 cut(s) 307
CviKI_1 RGCY 1 cut(s) 307
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 218
Eco72I CACGTG 1 cut(s) 171
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 130
FaeI CATG 4 cut(s) 66, 117, 204, 233
FaiI YATR 8 cut(s) 44, 46, 48, 64, 115, 202, 231, 321
FaqI GGGAC 1 cut(s) 308
FatI CATG 4 cut(s) 62, 113, 200, 229
FokI GGATG 2 cut(s) 114, 261
Hin1II CATG 4 cut(s) 66, 117, 204, 233
HinfI GANTC 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 168, 188
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 2 cut(s) 168, 188
HpyAV CCTTC 1 cut(s) 86
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 7 cut(s) 105, 168, 204, 225, 237, 266, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 1 cut(s) 118
HpySE526I ACGT 1 cut(s) 170
Hsp92II CATG 4 cut(s) 66, 117, 204, 233
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 5 cut(s) 100, 117, 144, 267, 291
LweI GCATC 1 cut(s) 136
MaeII ACGT 1 cut(s) 170
MaeIII GTNAC 2 cut(s) 149, 296
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 3 cut(s) 28, 291, 349
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 1 cut(s) 94
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 102
NlaIII CATG 4 cut(s) 66, 117, 204, 233
NlaIV GGNNCC 2 cut(s) 82, 219
NmuCI GTSAC 2 cut(s) 149, 296
NspI RCATGY 3 cut(s) 66, 117, 204
PaeI GCATGC 1 cut(s) 117
PagI TCATGA 1 cut(s) 229
PaqCI CACCTGC 1 cut(s) 272
PleI GAGTC 1 cut(s) 65
PmaCI CACGTG 1 cut(s) 171
PmlI CACGTG 1 cut(s) 171
PpsI GAGTC 1 cut(s) 65
Ppu21I YACGTR 1 cut(s) 171
PpuMI RGGWCCY 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 130
PspCI CACGTG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 2 cut(s) 82, 219
PspPI GGNCC 1 cut(s) 218
PspPPI RGGWCCY 1 cut(s) 218
PstI CTGCAG 1 cut(s) 283
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
Sau96I GGNCC 1 cut(s) 218
SbfI CCTGCAGG 1 cut(s) 283
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 1 cut(s) 132
SdaI CCTGCAGG 1 cut(s) 283
SduI GDGCHC 1 cut(s) 170
SetI ASST 2 cut(s) 173, 286
SfaNI GCATC 1 cut(s) 136
SfcI CTRYAG 1 cut(s) 279
SinI GGWCC 1 cut(s) 218
SphI GCATGC 1 cut(s) 117
Sse8387I CCTGCAGG 1 cut(s) 283
Sse9I AATT 3 cut(s) 28, 291, 349
SsiI CCGC 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 1 cut(s) 173
TasI AATT 3 cut(s) 28, 291, 349
TseFI GTSAC 2 cut(s) 149, 296
Tsp45I GTSAC 2 cut(s) 149, 296
VneI GTGCAC 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 1 cut(s) 291
XceI RCATGY 3 cut(s) 66, 117, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.