FvH4_2g20970

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
17493837 .. 17495465
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g20970.t1

Sequence Viewer

Length: 297 bp
ATGATCAGAAAGCTTCATCCCACCTCTTTCCTCATCCTCCTCATCATTACTATTCTACTCTTCGCATCAGTTCATGAAAATGGAGTAGTGGTGTGTGAAGATGAGGATCCATATGTAGGGGATCCTAATATAGGAGAGCCTTATCGGTGCATTACATCGTGGGACTGCACAACTATTGAAGCTTGCAAGCGAGACTGCTCCCAGAAATATCCCCAAGGTCGTGGTTACTGCAAATCCGAGCCCCCTTTCAAGGCTTGCTTGTGCTCCTACAATTGCCCCCCTCCACCCCCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.0

Weight (kDa)

5.56

Isoelectric Point (pI)

59.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 101, 114, 116, 129
AfiI CCNNNNNNNGG 3 cut(s) 116, 131, 250
AgsI TTSAA 2 cut(s) 179, 250
AluBI AGCT 2 cut(s) 13, 182
AluI AGCT 2 cut(s) 13, 182
Alw21I GWGCWC 1 cut(s) 266
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 4 cut(s) 101, 114, 116, 129
BamHI GGATCC 2 cut(s) 106, 121
BanII GRGCYC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 266
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 186
BmiI GGNNCC 2 cut(s) 108, 123
BmsI GCATC 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 214
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 131, 250
Bse8I GATNNNNATC 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 2 cut(s) 16, 33
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 3 cut(s) 116, 131, 250
BseRI GAGGAG 1 cut(s) 29
BsgI GTGCAG 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 266
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 3 cut(s) 116, 131, 250
BsmAI GTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 243, 266
Bsp143I GATC 3 cut(s) 3, 106, 121
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 108, 123
BspPI GGATC 4 cut(s) 101, 114, 116, 129
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 3 cut(s) 3, 106, 121
BssT1I CCWWGG 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 65
BstC8I GCNNGC 3 cut(s) 184, 188, 256
BstDEI CTNAG 1 cut(s) 294
BstENI CCTNNNNNAGG 1 cut(s) 129
BstF5I GGATG 2 cut(s) 16, 33
BstKTI GATC 3 cut(s) 6, 109, 124
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 3 cut(s) 3, 106, 121
BstX2I RGATCY 2 cut(s) 106, 121
BstXI CCANNNNNNTGG 1 cut(s) 221
BstYI RGATCY 2 cut(s) 106, 121
BtsCI GGATG 2 cut(s) 16, 33
Cac8I GCNNGC 3 cut(s) 184, 188, 256
CciI TCATGA 1 cut(s) 73
CviAII CATG 1 cut(s) 74
CviJI RGCY 5 cut(s) 13, 139, 182, 241, 254
CviKI_1 RGCY 5 cut(s) 13, 139, 182, 241, 254
DdeI CTNAG 1 cut(s) 294
DpnI GATC 3 cut(s) 5, 108, 123
DpnII GATC 3 cut(s) 3, 106, 121
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco130I CCWWGG 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 243
EcoNI CCTNNNNNAGG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 1 cut(s) 77
FaiI YATR 4 cut(s) 75, 112, 114, 131
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FaqI GGGAC 1 cut(s) 176
FatI CATG 1 cut(s) 73
FauNDI CATATG 1 cut(s) 112
FbaI TGATCA 1 cut(s) 3
FokI GGATG 2 cut(s) 3, 20
FriOI GRGCYC 1 cut(s) 243
Hin1II CATG 1 cut(s) 77
HindIII AAGCTT 2 cut(s) 11, 180
Hpy188I TCNGA 2 cut(s) 8, 238
Hpy188III TCNNGA 1 cut(s) 74
HpyCH4V TGCA 4 cut(s) 150, 168, 186, 231
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 1 cut(s) 77
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 106, 121
LmnI GCTCC 2 cut(s) 203, 269
LpnPI CCDG 1 cut(s) 215
LweI GCATC 1 cut(s) 74
MaeIII GTNAC 1 cut(s) 224
MalI GATC 3 cut(s) 5, 108, 123
MboI GATC 3 cut(s) 3, 106, 121
MboII GAAGA 2 cut(s) 52, 110
MfeI CAATTG 1 cut(s) 271
MflI RGATCY 2 cut(s) 106, 121
MhlI GDGCHC 2 cut(s) 243, 266
MluCI AATT 1 cut(s) 271
MnlI CCTC 6 cut(s) 34, 41, 47, 50, 97, 291
MslI CAYNNNNRTG 1 cut(s) 78
MunI CAATTG 1 cut(s) 271
NdeI CATATG 1 cut(s) 112
NdeII GATC 3 cut(s) 3, 106, 121
NlaIII CATG 1 cut(s) 77
NlaIV GGNNCC 2 cut(s) 108, 123
PagI TCATGA 1 cut(s) 73
PspN4I GGNNCC 2 cut(s) 108, 123
PsuI RGATCY 2 cut(s) 106, 121
RseI CAYNNNNRTG 1 cut(s) 78
Sau3AI GATC 3 cut(s) 3, 106, 121
SduI GDGCHC 2 cut(s) 243, 266
SetI ASST 4 cut(s) 15, 26, 184, 220
SfaNI GCATC 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 78
Sse9I AATT 1 cut(s) 271
StyI CCWWGG 1 cut(s) 214
TasI AATT 1 cut(s) 271
TspDTI ATGAA 3 cut(s) 5, 62, 90
XagI CCTNNNNNAGG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.