FvH4_2g17511

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003779
Physical Location & Seq
Reverse (-)
15058231 .. 15059062
832 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17511.t1

Sequence Viewer

Length: 402 bp
ATGGCTATCATATCTTGCACTCAGCTTGCTCTACTCGCATTTGCATCAGTTGCGGTGATGGGGATGTTTGTGAAGGCAGAAACATCTATGTGTACCAAACCAATGGGTTCTTGTGAAAGCCTTGACTGCAATGCAGTTTGTGACAATGATCATCCTGGTGGTGCCGGAATTTGTGACGAGAAAAACACTTGCAATTGCCATTACTCTTGTTCTGAGAAAACAAACTCAACCCCAGCGATTGATAAATCTTGCAAAGCCGCCGTGGGTAAATGTGATCAGAAATGCAATTTAGCGTGTTGCGACAATATTTGTAAAGTTTATTATGGGAAAGGTGGTGTTGGACATTGTGATCTCAACCCCCGTGGTCCATTTTTTATATGCAATTGTGACTATCCCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

134

Amino Acids

14.07

Weight (kDa)

5.83

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 161
AciI CCGC 2 cut(s) 53, 258
AcsI RAATTY 1 cut(s) 168
AfaI GTAC 1 cut(s) 94
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
ApoI RAATTY 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 365
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 365
BanI GGYRCC 1 cut(s) 161
BccI CCATC 1 cut(s) 52
BceAI ACGGC 1 cut(s) 245
BciT130I CCWGG 1 cut(s) 156
BclI TGATCA 2 cut(s) 148, 274
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 156
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 261, 361
Bse3DI GCAATG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 261, 361
BseGI GGATG 2 cut(s) 69, 151
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 2 cut(s) 35, 204
BseYI CCCAGC 1 cut(s) 232
BshNI GGYRCC 1 cut(s) 161
BsiSI CCGG 1 cut(s) 165
Bsp143I GATC 3 cut(s) 148, 274, 349
BspACI CCGC 2 cut(s) 53, 258
BspCNI CTCAG 2 cut(s) 34, 205
BspLI GGNNCC 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 136
BssECI CCNNGG 2 cut(s) 261, 361
BssMI GATC 3 cut(s) 148, 274, 349
Bst2UI CCWGG 1 cut(s) 156
BstAPI GCANNNNNTGC 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 21, 213
BstDSI CCRYGG 2 cut(s) 261, 361
BstF5I GGATG 2 cut(s) 69, 151
BstKTI GATC 3 cut(s) 151, 277, 352
BstMBI GATC 3 cut(s) 148, 274, 349
BstMWI GCNNNNNNNGC 3 cut(s) 35, 50, 126
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 154
BstXI CCANNNNNNTGG 1 cut(s) 103
BtgI CCRYGG 2 cut(s) 261, 361
BtsCI GGATG 2 cut(s) 69, 151
Cac8I GCNNGC 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 365
Csp6I GTAC 1 cut(s) 93
CspCI CAANNNNNGTGG 2 cut(s) 343, 378
CviJI RGCY 4 cut(s) 5, 25, 120, 257
CviKI_1 RGCY 4 cut(s) 5, 25, 120, 257
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 2 cut(s) 21, 213
DpnI GATC 3 cut(s) 150, 276, 351
DpnII GATC 3 cut(s) 148, 274, 349
Eco47I GGWCC 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 154
FaiI YATR 5 cut(s) 11, 89, 324, 377, 379
FbaI TGATCA 2 cut(s) 148, 274
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 2 cut(s) 76, 138
Fsp4HI GCNGC 1 cut(s) 258
GluI GCNGC 1 cut(s) 258
GsaI CCCAGC 1 cut(s) 236
HapII CCGG 1 cut(s) 165
HpaII CCGG 1 cut(s) 165
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 2 cut(s) 214, 279
Hpy8I GTNNAC 1 cut(s) 93
HpyAV CCTTC 1 cut(s) 67
HpyCH4V TGCA 8 cut(s) 18, 44, 129, 134, 192, 252, 285, 381
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 50, 126
HpyF3I CTNAG 2 cut(s) 21, 213
Ksp22I TGATCA 2 cut(s) 148, 274
Kzo9I GATC 3 cut(s) 148, 274, 349
LpnPI CCDG 4 cut(s) 141, 168, 178, 246
LweI GCATC 1 cut(s) 53
MaeIII GTNAC 3 cut(s) 140, 173, 386
MalI GATC 3 cut(s) 150, 276, 351
MboI GATC 3 cut(s) 148, 274, 349
MfeI CAATTG 2 cut(s) 193, 382
MluCI AATT 4 cut(s) 168, 193, 286, 382
MmeI TCCRAC 1 cut(s) 319
MslI CAYNNNNRTG 2 cut(s) 88, 156
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 156
MunI CAATTG 2 cut(s) 193, 382
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 3 cut(s) 35, 50, 126
NdeII GATC 3 cut(s) 148, 274, 349
NlaIV GGNNCC 1 cut(s) 163
NmuCI GTSAC 3 cut(s) 140, 173, 386
PkrI GCNGC 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 154
PspFI CCCAGC 1 cut(s) 232
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 1 cut(s) 365
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
RseI CAYNNNNRTG 2 cut(s) 88, 156
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 3 cut(s) 148, 274, 349
Sau96I GGNCC 1 cut(s) 365
ScrFI CCNGG 1 cut(s) 156
SetI ASST 2 cut(s) 27, 334
SfaNI GCATC 1 cut(s) 53
SinI GGWCC 1 cut(s) 365
SmiMI CAYNNNNRTG 2 cut(s) 88, 156
Sse9I AATT 4 cut(s) 168, 193, 286, 382
SsiI CCGC 2 cut(s) 53, 258
SspI AATATT 1 cut(s) 307
StyD4I CCNGG 1 cut(s) 154
TasI AATT 4 cut(s) 168, 193, 286, 382
TauI GCSGC 1 cut(s) 260
TseFI GTSAC 3 cut(s) 140, 173, 386
Tsp45I GTSAC 3 cut(s) 140, 173, 386
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.