Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003779

Physical Location & Seq

Genomic Coordinates Forward (+)

5834143 .. 5837314

Gene Structure 3172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G079900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGTGAAACCTGATGGAGTTCAGCATGCACTTGTGGGAGAGATAATCTCAAGGTTTGAGAAGAAGGGGTTTGATAATCCAAGAGACAAAAGCAGAGTGTTTGTGGTCGGGATGATGGTATTAGGGACCCTGATGCCTATAGTGAAAGGTGACATTTGCACAGAAGATTTGGGTGCATGCGATGATGGCTGCAATTCAAGGTGCACATCTGCACATACTGGGGCTAAGGCCGGTTGCGATTTGAACAACACCACCCCAGTTTGCAGATGCTACTTCGACTGTCCACCTCCAACTCCACCGCCATACTCAAAAACTTGCAAACTGAGTTTGGGAATATGGGGAGAAAACTGCTCTGACGAGGACTGCAACTCAGAGTGTGCTGCTAAATATCCTGGACCCCAACAAGGAATGGGTGCTACAAAGGAATTTGACTCTAAGCATTGTGTATGCCAGATTAATTGCACTGAATCGATTGAAACCAAGTCGTGGCAAACCAATTTGGTCGGTGCCGGTTTGGGATTTTGGACAACTGACTTGGTTTTGGCTCTCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006952 GO:0008150 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLR1-BP

Protein Analysis

185

Amino Acids

19.82

Weight (kDa)

5.16

Isoelectric Point (pI)

35.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30070 AT4G30074 AT5G38317 AT5G38330 AT5G42242
fragaria_vesca	FvH4_2g17511 FvH4_2g17531 FvH4_2g20970 FvH4_4g06580
malus_domestica	MD12G1050000.v1.1
prunus_persica	Prupe.1G068300_v2.0.a1 Prupe.1G078000_v2.0.a1 Prupe.1G079900_v2.0.a1 Prupe.1G080000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0287351
rosa_laevigata	RLG00000012496
rosa_multiflora	Rmu_sc0007029.1_g000029
rosa_roxburghii	Rroxscaffold_159G00433110 Rroxscaffold_175G00431890 Rroxscaffold_4G00325080 Rroxscaffold_5G00343450 Rroxscaffold_5G00345150 Rroxscaffold_6G00398330 Rroxscaffold_7G00181510 Rroxscaffold_7G00186350
rosa_rugosa	Rorug04G0008400 Rorug06G0187300
rosa_samantha	Rh4DG078100 Rh4DG092300 Rh6AG298700 Rh6CG305400 Rh6CG312800 Rh6DG296100
rosa_wichuraiana	Rw0G022670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	506
AccB7I	CCANNNNNTGG	1 cut(s)	486
AciI	CCGC	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	425
AfiI	CCNNNNNNNGG	2 cut(s)	404, 486
AgsI	TTSAA	3 cut(s)	198, 244, 476
AjnI	CCWGG	1 cut(s)	391
Alw21I	GWGCWC	1 cut(s)	206
Alw26I	GTCTC	1 cut(s)	78
Alw44I	GTGCAC	1 cut(s)	202
AoxI	GGCC	1 cut(s)	228
ApaLI	GTGCAC	1 cut(s)	202
ApeKI	GCWGC	2 cut(s)	189, 380
ApoI	RAATTY	1 cut(s)	425
AseI	ATTAAT	1 cut(s)	456
AspS9I	GGNCC	2 cut(s)	126, 395
AsuHPI	GGTGA	2 cut(s)	16, 161
AvaII	GGWCC	2 cut(s)	126, 395
BaeGI	GKGCMC	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	506
Bbv12I	GWGCWC	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	176, 367
BccI	CCATC	3 cut(s)	8, 109, 179
BciT130I	CCWGG	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	138
BisI	GCNGC	2 cut(s)	190, 381
BlsI	GCNGC	2 cut(s)	191, 382
Bme1390I	CCNGG	1 cut(s)	393
Bme18I	GGWCC	2 cut(s)	126, 395
BmgT120I	GGNCC	2 cut(s)	126, 395
BmiI	GGNNCC	4 cut(s)	127, 128, 397, 508
BmrFI	CCNGG	1 cut(s)	393
BmrI	ACTGGG	2 cut(s)	228, 251
BmsI	GCATC	2 cut(s)	123, 257
BmuI	ACTGGG	2 cut(s)	228, 251
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
Bpu10I	CCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	34
Bsa29I	ATCGAT	1 cut(s)	470
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 486
Bse118I	RCCGGY	2 cut(s)	230, 509
Bse1I	ACTGG	2 cut(s)	223, 257
BseBI	CCWGG	1 cut(s)	393
BseCI	ATCGAT	1 cut(s)	470
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	2 cut(s)	404, 486
BseMII	CTCAG	2 cut(s)	314, 384
BseNI	ACTGG	2 cut(s)	223, 257
BseRI	GAGGAG	1 cut(s)	539
BseSI	GKGCMC	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	176, 367
BsgI	GTGCAG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	230
BshNI	GGYRCC	1 cut(s)	506
BshVI	ATCGAT	1 cut(s)	470
BsiHKAI	GWGCWC	1 cut(s)	206
BsiSI	CCGG	2 cut(s)	231, 510
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	2 cut(s)	404, 486
BsmAI	GTCTC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	206
BspACI	CCGC	1 cut(s)	299
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	2 cut(s)	315, 383
BspDI	ATCGAT	1 cut(s)	470
BspLI	GGNNCC	4 cut(s)	127, 128, 397, 508
BspT107I	GGYRCC	1 cut(s)	506
BsrFI	RCCGGY	2 cut(s)	230, 509
BsrI	ACTGG	2 cut(s)	223, 257
BssAI	RCCGGY	2 cut(s)	230, 509
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	281
BstC8I	GCNNGC	2 cut(s)	27, 178
BstDEI	CTNAG	4 cut(s)	225, 323, 370, 435
BstF5I	GGATG	1 cut(s)	117
BstMAI	GTCTC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstNI	CCWGG	1 cut(s)	393
BstNSI	RCATGY	2 cut(s)	29, 180
BstSCI	CCNGG	1 cut(s)	391
BstSFI	CTRYAG	1 cut(s)	138
BstSLI	GKGCMC	1 cut(s)	206
BstV1I	GCAGC	2 cut(s)	176, 367
Bsu15I	ATCGAT	1 cut(s)	470
BsuRI	GGCC	1 cut(s)	230
BsuTUI	ATCGAT	1 cut(s)	470
BtgZI	GCGATG	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	2 cut(s)	27, 178
Cfr10I	RCCGGY	2 cut(s)	230, 509
Cfr13I	GGNCC	2 cut(s)	126, 395
ClaI	ATCGAT	1 cut(s)	470
CviAII	CATG	2 cut(s)	26, 177
CviJI	RGCY	4 cut(s)	189, 224, 230, 545
CviKI_1	RGCY	4 cut(s)	189, 224, 230, 545
DdeI	CTNAG	4 cut(s)	225, 323, 370, 435
Eco47I	GGWCC	2 cut(s)	126, 395
EcoO109I	RGGNCCY	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	391
FaeI	CATG	2 cut(s)	29, 180
FaiI	YATR	7 cut(s)	27, 140, 178, 216, 304, 337, 448
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	2 cut(s)	25, 176
Fnu4HI	GCNGC	2 cut(s)	190, 381
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	2 cut(s)	190, 381
GluI	GCNGC	2 cut(s)	190, 381
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	2 cut(s)	231, 510
Hin1II	CATG	2 cut(s)	29, 180
HinfI	GANTC	2 cut(s)	431, 467
HpaII	CCGG	2 cut(s)	231, 510
HphI	GGTGA	2 cut(s)	16, 161
Hpy166II	GTNNAC	2 cut(s)	204, 284
Hpy188I	TCNGA	2 cut(s)	355, 373
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	2 cut(s)	204, 284
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	4 cut(s)	225, 323, 370, 435
Hsp92II	CATG	2 cut(s)	29, 180
KflI	GGGWCCC	1 cut(s)	126
LpnPI	CCDG	9 cut(s)	24, 143, 204, 244, 270, 378, 405, 464, 523
Lsp1109I	GCAGC	2 cut(s)	176, 367
LweI	GCATC	2 cut(s)	123, 257
MaeIII	GTNAC	1 cut(s)	149
MboII	GAAGA	2 cut(s)	73, 176
MhlI	GDGCHC	1 cut(s)	206
MluCI	AATT	4 cut(s)	193, 425, 457, 496
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	2 cut(s)	297, 352
MseI	TTAA	1 cut(s)	456
MspI	CCGG	2 cut(s)	231, 510
MspR9I	CCNGG	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	186
NlaIII	CATG	2 cut(s)	29, 180
NlaIV	GGNNCC	4 cut(s)	127, 128, 397, 508
NmuCI	GTSAC	1 cut(s)	149
NspI	RCATGY	2 cut(s)	29, 180
PaeI	GCATGC	2 cut(s)	29, 180
PfeI	GAWTC	1 cut(s)	467
PflMI	CCANNNNNTGG	1 cut(s)	486
PfoI	TCCNGGA	1 cut(s)	391
PkrI	GCNGC	2 cut(s)	191, 382
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
PpuMI	RGGWCCY	1 cut(s)	126
PshBI	ATTAAT	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	4 cut(s)	127, 128, 397, 508
PspPI	GGNCC	2 cut(s)	126, 395
PspPPI	RGGWCCY	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	2 cut(s)	190, 381
Sau96I	GGNCC	2 cut(s)	126, 395
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	1 cut(s)	206
SetI	ASST	5 cut(s)	13, 56, 151, 203, 289
SfaNI	GCATC	2 cut(s)	123, 257
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	2 cut(s)	126, 395
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
SphI	GCATGC	2 cut(s)	29, 180
Sse9I	AATT	4 cut(s)	193, 425, 457, 496
SsiI	CCGC	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	391
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	2 cut(s)	276, 470
TasI	AATT	4 cut(s)	193, 425, 457, 496
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	2 cut(s)	189, 380
Tsp45I	GTSAC	1 cut(s)	149
TspRI	CASTG	1 cut(s)	469
Van91I	CCANNNNNTGG	1 cut(s)	486
VneI	GTGCAC	1 cut(s)	202
VpaK11BI	GGWCC	2 cut(s)	126, 395
VspI	ATTAAT	1 cut(s)	456
XapI	RAATTY	1 cut(s)	425
XceI	RCATGY	2 cut(s)	29, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.