Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003779

Physical Location & Seq

Genomic Coordinates Reverse (-)

1420886 .. 1422822

Gene Structure 1937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0008400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGTCCAAACTGAAATCATCCCAGTGAATGTGGGAGTCGTTCTTGACCTTAATACGCAGTATGGGAAGTTTTGGTTGAGTTGCATCAAAACGGCCCTATCAGACTTCTACGCTTCGCATGCTCCCTACAAGACTAGGATGGTTTTGAACACAAGGAACTCTAACCAGAACGTTCTTGGTGCAGCAGCTGCAGCTATAGTCAGAAGAATGCACAAGTACAAGCTAGCCATCTTGGGGCCAATGACATCAATGCAAACAAGGTTCGCCATCAATCTCGGAGAGCAAGCTCATGTGCCCATTATATCATTTTCTGCGACAAGTCCTTCTCTTACTTCGCTTCGCAGCTCCTACTTCTTCCAATTTACACAAAATGAGGCATCTCAAGTAACAGCCCTAACTGCTATTGTAAAAGCTTTTGGATGCAGACAAGTTGTGCTCGTCTACATTGATGATGAGTTTGGGAGAGGAGTCATACCTTATTTAACAGATGCCTTGTTAGAAGTTGATGCTCGTGTTCTCTACCGAAGTGTTAGTTCCCCATCAATTAATGATGATCAAATTCTCAATGAGCTTCGCAAGTTAATGATGATGCAAACCAGAGTCTTAATTTATTGTCCACATGCCGACCAATCTAACGTCAAGGATATTTTCCAAAGCAAAAGAGCTTGGAATGATGAGCGAAGGCTATGTTTGGCTATCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006952 GO:0008150 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

26.37

Weight (kDa)

9.21

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	9 - 174	4.5e-09	Periplasmic binding protein
ANF_receptor	PF01094	26 - 219	9.1e-35	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30070 AT4G30074 AT5G38317 AT5G38330 AT5G42242
fragaria_vesca	FvH4_2g17511 FvH4_2g17531 FvH4_2g20970 FvH4_4g06580
malus_domestica	MD12G1050000.v1.1
prunus_persica	Prupe.1G068300_v2.0.a1 Prupe.1G078000_v2.0.a1 Prupe.1G079900_v2.0.a1 Prupe.1G080000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0287351
rosa_laevigata	RLG00000012496
rosa_multiflora	Rmu_sc0007029.1_g000029
rosa_roxburghii	Rroxscaffold_159G00433110 Rroxscaffold_175G00431890 Rroxscaffold_4G00325080 Rroxscaffold_5G00343450 Rroxscaffold_5G00345150 Rroxscaffold_6G00398330 Rroxscaffold_7G00181510 Rroxscaffold_7G00186350
rosa_rugosa	Rorug04G0008400 Rorug06G0187300
rosa_samantha	Rh4DG078100 Rh4DG092300 Rh6AG298700 Rh6CG305400 Rh6CG312800 Rh6DG296100
rosa_wichuraiana	Rw0G022670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	441
AclI	AACGTT	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	558
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	148
AluBI	AGCT	8 cut(s)	188, 194, 223, 287, 345, 413, 571, 665
AluI	AGCT	8 cut(s)	188, 194, 223, 287, 345, 413, 571, 665
Alw21I	GWGCWC	1 cut(s)	438
AlwNI	CAGNNNCTG	1 cut(s)	188
AoxI	GGCC	2 cut(s)	93, 236
ApeKI	GCWGC	5 cut(s)	182, 185, 188, 191, 342
ApoI	RAATTY	1 cut(s)	558
AseI	ATTAAT	1 cut(s)	546
AspS9I	GGNCC	3 cut(s)	4, 94, 236
AsuNHI	GCTAGC	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	297
BauI	CACGAG	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	5 cut(s)	175, 194, 197, 203, 354
BccI	CCATC	4 cut(s)	133, 236, 275, 547
BceAI	ACGGC	1 cut(s)	108
BclI	TGATCA	1 cut(s)	553
BfaI	CTAG	2 cut(s)	135, 224
BfmI	CTRYAG	2 cut(s)	189, 195
BisI	GCNGC	5 cut(s)	183, 186, 189, 192, 343
BlsI	GCNGC	5 cut(s)	184, 187, 190, 193, 344
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	3 cut(s)	4, 94, 236
BmiI	GGNNCC	1 cut(s)	237
BmrI	ACTGGG	1 cut(s)	17
BmsI	GCATC	6 cut(s)	93, 386, 410, 478, 496, 579
BmtI	GCTAGC	1 cut(s)	227
BmuI	ACTGGG	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	23
BseGI	GGATG	3 cut(s)	18, 144, 425
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	480
BseSI	GKGCMC	1 cut(s)	297
BseXI	GCAGC	5 cut(s)	175, 194, 197, 203, 354
BsgI	GTGCAG	1 cut(s)	201
BshFI	GGCC	2 cut(s)	95, 238
BsiHKAI	GWGCWC	1 cut(s)	438
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	2 cut(s)	95, 238
Bsp1286I	GDGCHC	2 cut(s)	297, 438
Bsp143I	GATC	1 cut(s)	553
BspANI	GGCC	2 cut(s)	95, 238
BspLI	GGNNCC	1 cut(s)	237
BspMAI	CTGCAG	1 cut(s)	193
BspOI	GCTAGC	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	23
BssMI	GATC	1 cut(s)	553
BssSI	CACGAG	1 cut(s)	510
Bst2BI	CACGAG	1 cut(s)	510
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	3 cut(s)	120, 225, 285
BstF5I	GGATG	3 cut(s)	18, 144, 425
BstKTI	GATC	1 cut(s)	556
BstMBI	GATC	1 cut(s)	553
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 188, 191, 398
BstNSI	RCATGY	2 cut(s)	122, 623
BstSFI	CTRYAG	2 cut(s)	189, 195
BstSLI	GKGCMC	1 cut(s)	297
BstV1I	GCAGC	5 cut(s)	175, 194, 197, 203, 354
BsuRI	GGCC	2 cut(s)	95, 238
BtsCI	GGATG	3 cut(s)	18, 144, 425
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	3 cut(s)	120, 225, 285
CaiI	CAGNNNCTG	1 cut(s)	188
Cfr13I	GGNCC	3 cut(s)	4, 94, 236
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	3 cut(s)	119, 290, 620
CviQI	GTAC	1 cut(s)	217
DpnI	GATC	1 cut(s)	555
DpnII	GATC	1 cut(s)	553
Eco47I	GGWCC	1 cut(s)	4
FaeI	CATG	3 cut(s)	122, 293, 623
FaiI	YATR	8 cut(s)	63, 120, 197, 291, 302, 473, 621, 688
FatI	CATG	3 cut(s)	118, 289, 619
FbaI	TGATCA	1 cut(s)	553
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	5 cut(s)	183, 186, 189, 192, 343
FokI	GGATG	3 cut(s)	5, 151, 432
Fsp4HI	GCNGC	5 cut(s)	183, 186, 189, 192, 343
FspBI	CTAG	2 cut(s)	135, 224
GluI	GCNGC	5 cut(s)	183, 186, 189, 192, 343
HaeIII	GGCC	2 cut(s)	95, 238
Hin1II	CATG	3 cut(s)	122, 293, 623
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	3 cut(s)	36, 468, 600
Hpy166II	GTNNAC	2 cut(s)	442, 617
Hpy188I	TCNGA	3 cut(s)	103, 203, 278
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	2 cut(s)	442, 617
HpyAV	CCTTC	2 cut(s)	333, 675
HpyCH4IV	ACGT	2 cut(s)	171, 636
HpyCH4V	TGCA	7 cut(s)	84, 182, 191, 211, 253, 423, 592
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 188, 191, 398
HpySE526I	ACGT	2 cut(s)	171, 636
Hsp92II	CATG	3 cut(s)	122, 293, 623
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	1 cut(s)	553
LmnI	GCTCC	2 cut(s)	127, 350
LpnPI	CCDG	3 cut(s)	36, 179, 610
Lsp1109I	GCAGC	5 cut(s)	175, 194, 197, 203, 354
LweI	GCATC	6 cut(s)	93, 386, 410, 478, 496, 579
MaeI	CTAG	2 cut(s)	135, 224
MaeII	ACGT	2 cut(s)	171, 636
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	1 cut(s)	555
MboI	GATC	1 cut(s)	553
MboII	GAAGA	2 cut(s)	216, 346
MhlI	GDGCHC	2 cut(s)	297, 438
MluCI	AATT	4 cut(s)	359, 543, 558, 606
MlyI	GAGTC	3 cut(s)	45, 477, 609
MnlI	CCTC	2 cut(s)	367, 458
MseI	TTAA	5 cut(s)	51, 482, 546, 581, 605
MslI	CAYNNNNRTG	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	213
MwoI	GCNNNNNNNGC	4 cut(s)	119, 188, 191, 398
NdeII	GATC	1 cut(s)	553
NheI	GCTAGC	1 cut(s)	223
NlaIII	CATG	3 cut(s)	122, 293, 623
NlaIV	GGNNCC	1 cut(s)	237
NspI	RCATGY	2 cut(s)	122, 623
PaeI	GCATGC	1 cut(s)	122
PctI	GAATGC	1 cut(s)	213
PkrI	GCNGC	5 cut(s)	184, 187, 190, 193, 344
PleI	GAGTC	3 cut(s)	44, 476, 608
PpsI	GAGTC	3 cut(s)	44, 476, 608
PshBI	ATTAAT	1 cut(s)	546
Psp1406I	AACGTT	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	3 cut(s)	4, 94, 236
PstI	CTGCAG	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	188
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	23
SaqAI	TTAA	5 cut(s)	51, 482, 546, 581, 605
SatI	GCNGC	5 cut(s)	183, 186, 189, 192, 343
Sau3AI	GATC	1 cut(s)	553
Sau96I	GGNCC	3 cut(s)	4, 94, 236
SchI	GAGTC	3 cut(s)	45, 477, 609
SduI	GDGCHC	2 cut(s)	297, 438
SfaNI	GCATC	6 cut(s)	93, 386, 410, 478, 496, 579
SfcI	CTRYAG	2 cut(s)	189, 195
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
SphI	GCATGC	1 cut(s)	122
Sse9I	AATT	4 cut(s)	359, 543, 558, 606
SspMI	CTAG	2 cut(s)	135, 224
TaiI	ACGT	2 cut(s)	174, 639
TasI	AATT	4 cut(s)	359, 543, 558, 606
TatI	WGTACW	1 cut(s)	216
Tru1I	TTAA	5 cut(s)	51, 482, 546, 581, 605
Tru9I	TTAA	5 cut(s)	51, 482, 546, 581, 605
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	5 cut(s)	182, 185, 188, 191, 342
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	1 cut(s)	558
XceI	RCATGY	2 cut(s)	122, 623
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	2 cut(s)	135, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.