AT4G30074

Defensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003779
Physical Location & Seq
Reverse (-)
14699737 .. 14700599
863 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G30074.1

Sequence Viewer

Length: 381 bp
ATGGAGAAGGCACTTTCACTTGTGGTTTTCATCATCTTCTCTATCATGCTTGCTTCCGTTGAGAATAAGGTAAACGCAAATACATGCATCGAGGGTATTGGTAATTGTCAGCAATGTGACGTGAGATGCAAGGCCAGACACGGACCAGCGGCCAAAGGCGCTTGTGACTCCAAATTTCAACTATGCACGTGCAATTACCCTTGCGGACAGGGTCCATCGCCTCCGCAGCCCAAAAAATGTTATGGTGGAGCTGGCATTTGCAGCGATAGATGTGGGGCTCAGTGTTGCAACCAAAACTGTGCGCAAAAGTATAATCAAGGAAGTGGATTTTGTGACAGCATTGGCAATACTTCTTTGTGTAAATGCCAATATAATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLR1-BP

Protein Analysis

126

Amino Acids

13.38

Weight (kDa)

8.41

Isoelectric Point (pI)

30.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 303
AciI CCGC 3 cut(s) 149, 204, 224
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 1 cut(s) 173
AcvI CACGTG 1 cut(s) 189
AgsI TTSAA 1 cut(s) 179
AjiI CACGTC 1 cut(s) 121
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
AoxI GGCC 2 cut(s) 132, 150
ApeKI GCWGC 2 cut(s) 226, 261
ApoI RAATTY 1 cut(s) 173
AspLEI GCGC 2 cut(s) 161, 304
AspS9I GGNCC 2 cut(s) 143, 212
AvaII GGWCC 2 cut(s) 143, 212
BanII GRGCYC 1 cut(s) 280
BbrPI CACGTG 1 cut(s) 189
BbvI GCAGC 2 cut(s) 238, 273
BccI CCATC 1 cut(s) 223
BfoI RGCGCY 1 cut(s) 162
BisI GCNGC 3 cut(s) 150, 227, 262
BlsI GCNGC 3 cut(s) 151, 228, 263
Bme18I GGWCC 2 cut(s) 143, 212
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 143, 212
BmiI GGNNCC 1 cut(s) 213
BmsI GCATC 2 cut(s) 96, 116
BsaAI YACGTR 1 cut(s) 189
Bse3DI GCAATG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 119
BseMII CTCAG 1 cut(s) 293
BseXI GCAGC 2 cut(s) 238, 273
BshFI GGCC 2 cut(s) 134, 152
BsnI GGCC 2 cut(s) 134, 152
Bsp1286I GDGCHC 1 cut(s) 280
BspACI CCGC 3 cut(s) 149, 204, 224
BspANI GGCC 2 cut(s) 134, 152
BspCNI CTCAG 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 299
BstBAI YACGTR 1 cut(s) 189
BstC8I GCNNGC 2 cut(s) 51, 253
BstDEI CTNAG 1 cut(s) 279
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 2 cut(s) 161, 304
BstMWI GCNNNNNNNGC 3 cut(s) 158, 226, 261
BstNSI RCATGY 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 238, 273
BsuRI GGCC 2 cut(s) 134, 152
BtgZI GCGATG 1 cut(s) 201
BtrI CACGTC 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 287
Cac8I GCNNGC 2 cut(s) 51, 253
CfoI GCGC 2 cut(s) 161, 304
Cfr13I GGNCC 2 cut(s) 143, 212
CviAII CATG 2 cut(s) 46, 84
CviJI RGCY 5 cut(s) 134, 152, 229, 251, 278
CviKI_1 RGCY 5 cut(s) 134, 152, 229, 251, 278
DdeI CTNAG 1 cut(s) 279
EaeI YGGCCR 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 280
Eco47I GGWCC 2 cut(s) 143, 212
Eco72I CACGTG 1 cut(s) 189
EcoT22I ATGCAT 1 cut(s) 89
EcoT38I GRGCYC 1 cut(s) 280
FaeI CATG 2 cut(s) 49, 87
FaiI YATR 6 cut(s) 47, 85, 184, 243, 312, 372
FatI CATG 2 cut(s) 45, 83
Fnu4HI GCNGC 3 cut(s) 150, 227, 262
FriOI GRGCYC 1 cut(s) 280
Fsp4HI GCNGC 3 cut(s) 150, 227, 262
FspI TGCGCA 1 cut(s) 303
GlaI GCGC 2 cut(s) 160, 303
GluI GCNGC 3 cut(s) 150, 227, 262
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 2 cut(s) 134, 152
HhaI GCGC 2 cut(s) 161, 304
Hin1II CATG 2 cut(s) 49, 87
Hin6I GCGC 2 cut(s) 159, 302
HinP1I GCGC 2 cut(s) 159, 302
HinfI GANTC 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 73
Hpy8I GTNNAC 1 cut(s) 73
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4IV ACGT 2 cut(s) 120, 188
HpyCH4V TGCA 6 cut(s) 87, 129, 186, 192, 261, 288
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 226, 261
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 2 cut(s) 120, 188
Hsp92II CATG 2 cut(s) 49, 87
HspAI GCGC 2 cut(s) 159, 302
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 4 cut(s) 148, 159, 194, 237
Lsp1109I GCAGC 2 cut(s) 238, 273
LweI GCATC 2 cut(s) 96, 116
MaeII ACGT 2 cut(s) 120, 188
MaeIII GTNAC 3 cut(s) 116, 164, 332
MboII GAAGA 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 280
MluCI AATT 4 cut(s) 103, 173, 193, 373
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 2 cut(s) 85, 231
Mph1103I ATGCAT 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 149
MwoI GCNNNNNNNGC 3 cut(s) 158, 226, 261
NlaIII CATG 2 cut(s) 49, 87
NlaIV GGNNCC 1 cut(s) 213
NmuCI GTSAC 3 cut(s) 116, 164, 332
NsbI TGCGCA 1 cut(s) 303
NsiI ATGCAT 1 cut(s) 89
NspI RCATGY 1 cut(s) 87
PflFI GACNNNGTC 1 cut(s) 210
PkrI GCNGC 3 cut(s) 151, 228, 263
PleI GAGTC 1 cut(s) 161
PmaCI CACGTG 1 cut(s) 189
PmlI CACGTG 1 cut(s) 189
PpsI GAGTC 1 cut(s) 161
Ppu21I YACGTR 1 cut(s) 189
PspCI CACGTG 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 213
PspPI GGNCC 2 cut(s) 143, 212
PsyI GACNNNGTC 1 cut(s) 210
SatI GCNGC 3 cut(s) 150, 227, 262
Sau96I GGNCC 2 cut(s) 143, 212
SchI GAGTC 1 cut(s) 161
SduI GDGCHC 1 cut(s) 280
SetI ASST 4 cut(s) 72, 123, 191, 253
SfaNI GCATC 2 cut(s) 96, 116
SinI GGWCC 2 cut(s) 143, 212
Sse9I AATT 4 cut(s) 103, 173, 193, 373
SsiI CCGC 3 cut(s) 149, 204, 224
TaaI ACNGT 1 cut(s) 299
TaiI ACGT 2 cut(s) 123, 191
TaqI TCGA 1 cut(s) 90
TasI AATT 4 cut(s) 103, 173, 193, 373
TauI GCSGC 1 cut(s) 152
TscAI CASTG 1 cut(s) 287
TseFI GTSAC 3 cut(s) 116, 164, 332
TseI GCWGC 2 cut(s) 226, 261
Tsp45I GTSAC 3 cut(s) 116, 164, 332
TspDTI ATGAA 1 cut(s) 19
TspGWI ACGGA 2 cut(s) 46, 156
TspRI CASTG 1 cut(s) 287
Tth111I GACNNNGTC 1 cut(s) 210
VpaK11BI GGWCC 2 cut(s) 143, 212
XapI RAATTY 1 cut(s) 173
XceI RCATGY 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.