Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003779

Physical Location & Seq

Genomic Coordinates Forward (+)

5850643 .. 5851534

Gene Structure 892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCTATCACATCCTGCTCTCAGCTTGTTCTCCTTGCTTTTGCATCAGCTGCCATAATGGGGATGTTGTTGGTGAAGGCCGAGATATGCAACGAATCGATCGGTTCTTGTCAAGGCATCGACTGCAACAAAGCTTGCGGCGACAAACATCCCGGTGGCTCCGGCACATGTGATCCAACAAACACATGCAAATGCTATTTTGACTGTCCACCCAAAAAGAAATGCAACGCCGGCTTGGGTCTTTGCAGTGTCGAAGGATGCAATGAACAGTGTTGTGCTCAAAACTGTGCAAGCAAGTATACAGAGGGAGTTGGATATTGTGACATGCTAGGCTCAACATGGTTGTGTCAATGCCAGTACACCTGCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLR1-BP

Protein Analysis

124

Amino Acids

12.87

Weight (kDa)

5.18

Isoelectric Point (pI)

26.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30070 AT4G30074 AT5G38317 AT5G38330 AT5G42242
fragaria_vesca	FvH4_2g17511 FvH4_2g17531 FvH4_2g20970 FvH4_4g06580
malus_domestica	MD12G1050000.v1.1
prunus_persica	Prupe.1G068300_v2.0.a1 Prupe.1G078000_v2.0.a1 Prupe.1G079900_v2.0.a1 Prupe.1G080000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0287351
rosa_laevigata	RLG00000012496
rosa_multiflora	Rmu_sc0007029.1_g000029
rosa_roxburghii	Rroxscaffold_159G00433110 Rroxscaffold_175G00431890 Rroxscaffold_4G00325080 Rroxscaffold_5G00343450 Rroxscaffold_5G00345150 Rroxscaffold_6G00398330 Rroxscaffold_7G00181510 Rroxscaffold_7G00186350
rosa_rugosa	Rorug04G0008400 Rorug06G0187300
rosa_samantha	Rh4DG078100 Rh4DG092300 Rh6AG298700 Rh6CG305400 Rh6CG312800 Rh6DG296100
rosa_wichuraiana	Rw0G022670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	299
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	1 cut(s)	167
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	60
AflIII	ACRYGT	1 cut(s)	167
AluBI	AGCT	3 cut(s)	25, 50, 134
AluI	AGCT	3 cut(s)	25, 50, 134
Alw21I	GWGCWC	1 cut(s)	280
AlwI	GGATC	1 cut(s)	167
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	280
BbvI	GCAGC	1 cut(s)	37
BcnI	CCSGG	1 cut(s)	153
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	364
BisI	GCNGC	2 cut(s)	51, 139
BlsI	GCNGC	2 cut(s)	52, 140
Bme1390I	CCNGG	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	3 cut(s)	53, 126, 248
BpuMI	CCSGG	1 cut(s)	153
Bsa29I	ATCGAT	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	355
Bse3DI	GCAATG	1 cut(s)	268
BseCI	ATCGAT	1 cut(s)	98
BseGI	GGATG	4 cut(s)	11, 69, 148, 263
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMI	GCAATG	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	355
BseXI	GCAGC	1 cut(s)	37
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	80
BshVI	ATCGAT	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	280
BsiSI	CCGG	3 cut(s)	153, 162, 231
BslI	CCNNNNNNNGG	1 cut(s)	60
BsnI	GGCC	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	2 cut(s)	99, 172
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	1 cut(s)	34
BspDI	ATCGAT	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	160
BspMAI	CTGCAG	1 cut(s)	368
BspPI	GGATC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	268
BsrFI	RCCGGY	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	230
BssMI	GATC	2 cut(s)	99, 172
BssNAI	GTATAC	1 cut(s)	300
Bst1107I	GTATAC	1 cut(s)	300
Bst4CI	ACNGT	3 cut(s)	206, 270, 287
BstAPI	GCANNNNNTGC	2 cut(s)	50, 123
BstC8I	GCNNGC	3 cut(s)	136, 232, 292
BstDEI	CTNAG	1 cut(s)	21
BstF5I	GGATG	4 cut(s)	11, 69, 148, 263
BstKTI	GATC	2 cut(s)	102, 175
BstMBI	GATC	2 cut(s)	99, 172
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 123, 231
BstNSI	RCATGY	3 cut(s)	171, 189, 328
BstSCI	CCNGG	1 cut(s)	151
BstSFI	CTRYAG	1 cut(s)	364
BstV1I	GCAGC	1 cut(s)	37
BstZ17I	GTATAC	1 cut(s)	300
Bsu15I	ATCGAT	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	80
BsuTUI	ATCGAT	1 cut(s)	98
BtsCI	GGATG	4 cut(s)	11, 69, 148, 263
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	2 cut(s)	253, 275
Cac8I	GCNNGC	3 cut(s)	136, 232, 292
Cfr10I	RCCGGY	1 cut(s)	230
ClaI	ATCGAT	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	4 cut(s)	168, 186, 325, 339
CviJI	RGCY	8 cut(s)	5, 25, 50, 80, 134, 159, 234, 333
CviKI_1	RGCY	8 cut(s)	5, 25, 50, 80, 134, 159, 234, 333
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	2 cut(s)	101, 174
DpnII	GATC	2 cut(s)	99, 172
FaeI	CATG	4 cut(s)	171, 189, 328, 342
FaiI	YATR	7 cut(s)	56, 88, 169, 187, 300, 326, 340
FatI	CATG	4 cut(s)	167, 185, 324, 338
FblI	GTMKAC	1 cut(s)	299
Fnu4HI	GCNGC	2 cut(s)	51, 139
FokI	GGATG	3 cut(s)	76, 135, 270
Fsp4HI	GCNGC	2 cut(s)	51, 139
FspBI	CTAG	1 cut(s)	329
GluI	GCNGC	2 cut(s)	51, 139
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	3 cut(s)	153, 162, 231
Hin1II	CATG	4 cut(s)	171, 189, 328, 342
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	3 cut(s)	153, 162, 231
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	3 cut(s)	209, 300, 360
Hpy8I	GTNNAC	3 cut(s)	209, 300, 360
HpyAV	CCTTC	2 cut(s)	70, 248
HpyCH4III	ACNGT	3 cut(s)	206, 270, 287
HpyCH4V	TGCA	9 cut(s)	44, 90, 126, 189, 225, 246, 261, 290, 366
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 123, 231
HpyF3I	CTNAG	1 cut(s)	21
Hsp92II	CATG	4 cut(s)	171, 189, 328, 342
KroI	GCCGGC	1 cut(s)	230
KroNI	GCCGGC	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	99, 172
LmnI	GCTCC	1 cut(s)	164
LpnPI	CCDG	5 cut(s)	28, 166, 175, 244, 368
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	3 cut(s)	53, 126, 248
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	2 cut(s)	101, 174
MboI	GATC	2 cut(s)	99, 172
MhlI	GDGCHC	1 cut(s)	280
MmeI	TCCRAC	2 cut(s)	200, 292
MnlI	CCTC	1 cut(s)	298
MroNI	GCCGGC	1 cut(s)	230
MslI	CAYNNNNRTG	3 cut(s)	153, 190, 343
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	3 cut(s)	153, 162, 231
MspR9I	CCNGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	3 cut(s)	50, 123, 231
NaeI	GCCGGC	1 cut(s)	232
NciI	CCSGG	1 cut(s)	153
NdeII	GATC	2 cut(s)	99, 172
NgoMIV	GCCGGC	1 cut(s)	230
NlaIII	CATG	4 cut(s)	171, 189, 328, 342
NlaIV	GGNNCC	1 cut(s)	160
NmeAIII	GCCGAG	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	320
NspI	RCATGY	3 cut(s)	171, 189, 328
PciI	ACATGT	1 cut(s)	167
PdiI	GCCGGC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	52, 140
Ple19I	CGATCG	1 cut(s)	102
PscI	ACATGT	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	368
PvuI	CGATCG	1 cut(s)	102
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	3 cut(s)	153, 190, 343
SatI	GCNGC	2 cut(s)	51, 139
Sau3AI	GATC	2 cut(s)	99, 172
ScrFI	CCNGG	1 cut(s)	153
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	4 cut(s)	27, 52, 136, 365
SfaNI	GCATC	3 cut(s)	53, 126, 248
SfcI	CTRYAG	1 cut(s)	364
SmiMI	CAYNNNNRTG	3 cut(s)	153, 190, 343
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	1 cut(s)	151
TaaI	ACNGT	3 cut(s)	206, 270, 287
TaqI	TCGA	3 cut(s)	98, 120, 252
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	95
TscAI	CASTG	2 cut(s)	253, 275
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	2 cut(s)	253, 275
XceI	RCATGY	3 cut(s)	171, 189, 328
XmiI	GTMKAC	1 cut(s)	299
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.