Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Forward (+)

16357421 .. 16359565

Gene Structure 2145 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCGATTCGGAAGGAGGAAGAAAGTAGAGAAGAACAGAGCAATTCGTTTCTTCTTGATGCTCTCTACTGCGAAGAAGAGAAATGGGACGATGAAGGAGAAGAAGTTGAAGAAAACTCTTCCTTGTCTTCTTCTTCTTCTCCATTCGTTGTTTTGCAACAAGATTTGTTCTGGGAAGATGAAGATCTGGTTACACTCTTCTCCAAAGAAGAAGAACAAGGACTCAGCTGTCTCGATGATGTTTATCTTTCCACGGATCGAAAAGAAGCTGTTGGTTGGATTCTGAGAGTCAACGCTCATTATGGCTTCTCTACTTTAGCAGCTGTTTTAGCCATAACTTATCTCGATAAGTTCATCTGTAGCTACAGCTTACAGAGAGACAAACCATGGATGCTTCAGCTCGTTTCTGTCGCGTGTCTCTCATTAGCTGCTAAAGTCGAAGAAACCCAAGTCCCTCTTCTTCTAGACTTTCAAGTGGAGGAGACAAAGTATGTGTTTGAAGCAAAAACCATACAGAGAATGGAGCTACTGATTCTGTCTACTCTCGAGTGGAAGATGCATCTCATTACTCCAATTTCGTTCGTAGACCACATTATCAGGAGATTGGGACTTAAGAACAATGCTCACTGGGATTTCCTCAACAAATGCCACCGTCTCCTCCTCTCTGTAATCTCCGATTCAAGATTTGTCGGGTACCTCCCATCAGTAGTTGCCGCAGCTACCATGATGCGAATTATAGAGCAAGTTGATCCCTTTGACCCTCTTTCATACCAAACTAATCTCCTCGGTGTCCTTAACTTAACCAAGGAAAAGGTGAAAACTTGCTACGATCTAATCCTCCAACTACCAGTGGACCGCATCGGTTTACAGATCCAAATCCAATCTTCCAAGAAACGCAAGAGTCACGATTCATCATCATCGTTGAACAGTCCAAGCTGCGTGATTGATGCAAACCCTTTCAATAGCGACGAAAGCTCAAACGATTCGTGGTCAGCGAGTTCGTGCAACCCACCAACGTCGTCGTCGTCCCCGCAGCAACAACCTCCATTGAAGAAGATGAGAGGAGCTGAAGAGAATGAGAAGAAGAAGCCGATTTTGCATCTGCCATGGGCAATCGTAGCCACTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

376

Amino Acids

42.7

Weight (kDa)

4.89

Isoelectric Point (pI)

63.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	85 - 186	1.5e-25	Cyclin, N-terminal domain
Cyclin_C	PF02984	189 - 285	3e-15	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	228
Acc65I	GGTACC	1 cut(s)	693
AccB1I	GGYRCC	1 cut(s)	693
AccI	GTMKAC	2 cut(s)	539, 585
AccII	CGCG	1 cut(s)	413
AciI	CCGC	3 cut(s)	714, 856, 1031
AclWI	GGATC	3 cut(s)	264, 743, 865
AcuI	CTGAAG	2 cut(s)	380, 1089
AfaI	GTAC	1 cut(s)	695
AflII	CTTAAG	1 cut(s)	611
AgsI	TTSAA	7 cut(s)	110, 473, 500, 681, 925, 961, 1051
AjuI	GAANNNNNNNTTGG	2 cut(s)	441, 473
Alw26I	GTCTC	5 cut(s)	236, 372, 422, 476, 659
AlwI	GGATC	3 cut(s)	264, 743, 865
Ama87I	CYCGRG	1 cut(s)	545
ApeKI	GCWGC	5 cut(s)	320, 428, 716, 936, 1033
Asp718I	GGTACC	1 cut(s)	693
AspS9I	GGNCC	1 cut(s)	853
AsuHPI	GGTGA	1 cut(s)	826
AvaI	CYCGRG	1 cut(s)	545
AvaII	GGWCC	1 cut(s)	853
BanI	GGYRCC	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	120
BbvI	GCAGC	5 cut(s)	332, 415, 728, 923, 1045
BccI	CCATC	1 cut(s)	709
BcoDI	GTCTC	5 cut(s)	236, 372, 422, 476, 659
BfaI	CTAG	1 cut(s)	464
BfmI	CTRYAG	2 cut(s)	358, 364
BfrI	CTTAAG	1 cut(s)	611
BglII	AGATCT	1 cut(s)	184
BisI	GCNGC	6 cut(s)	321, 429, 714, 717, 937, 1034
BlsI	GCNGC	6 cut(s)	322, 430, 715, 718, 938, 1035
Bme18I	GGWCC	1 cut(s)	853
BmeT110I	CYCGRG	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	853
BmiI	GGNNCC	1 cut(s)	695
BmrI	ACTGGG	1 cut(s)	637
BmsI	GCATC	8 cut(s)	49, 381, 546, 568, 717, 867, 937, 1108
BmuI	ACTGGG	1 cut(s)	637
BpiI	GAAGAC	1 cut(s)	120
BsaBI	GATNNNNATC	3 cut(s)	183, 243, 875
BsaJI	CCNNGG	5 cut(s)	252, 386, 784, 804, 1106
BsaXI	ACNNNNNCTCC	4 cut(s)	90, 120, 473, 503
Bse1I	ACTGG	2 cut(s)	632, 848
Bse8I	GATNNNNATC	3 cut(s)	183, 243, 875
BseDI	CCNNGG	5 cut(s)	252, 386, 784, 804, 1106
BseGI	GGATG	1 cut(s)	396
BseJI	GATNNNNATC	3 cut(s)	183, 243, 875
BseMII	CTCAG	2 cut(s)	238, 275
BseNI	ACTGG	2 cut(s)	632, 848
BseRI	GAGGAG	5 cut(s)	494, 647, 650, 773, 1077
BseXI	GCAGC	5 cut(s)	332, 415, 728, 923, 1045
Bsh1236I	CGCG	1 cut(s)	413
BshNI	GGYRCC	1 cut(s)	693
BsiHKCI	CYCGRG	1 cut(s)	545
BslFI	GGGAC	4 cut(s)	101, 437, 621, 1012
BsmAI	GTCTC	5 cut(s)	236, 372, 422, 476, 659
BsmBI	CGTCTC	1 cut(s)	659
BsmFI	GGGAC	4 cut(s)	101, 437, 621, 1012
BsoBI	CYCGRG	1 cut(s)	545
Bsp143I	GATC	5 cut(s)	184, 256, 748, 829, 870
Bsp19I	CCATGG	2 cut(s)	386, 1106
BspACI	CCGC	3 cut(s)	714, 856, 1031
BspCNI	CTCAG	2 cut(s)	237, 276
BspFNI	CGCG	1 cut(s)	413
BspLI	GGNNCC	1 cut(s)	695
BspPI	GGATC	3 cut(s)	264, 743, 865
BspT107I	GGYRCC	1 cut(s)	693
BspTI	CTTAAG	1 cut(s)	611
BsrI	ACTGG	2 cut(s)	632, 848
BssECI	CCNNGG	5 cut(s)	252, 386, 784, 804, 1106
BssMI	GATC	5 cut(s)	184, 256, 748, 829, 870
BssT1I	CCWWGG	3 cut(s)	386, 804, 1106
Bst4CI	ACNGT	2 cut(s)	653, 929
Bst6I	CTCTTC	5 cut(s)	72, 124, 203, 462, 1065
BstAFI	CTTAAG	1 cut(s)	611
BstDEI	CTNAG	2 cut(s)	224, 284
BstDSI	CCRYGG	3 cut(s)	252, 386, 1106
BstF5I	GGATG	1 cut(s)	396
BstFNI	CGCG	1 cut(s)	413
BstKTI	GATC	5 cut(s)	187, 259, 751, 832, 873
BstMAI	GTCTC	5 cut(s)	236, 372, 422, 476, 659
BstMBI	GATC	5 cut(s)	184, 256, 748, 829, 870
BstMWI	GCNNNNNNNGC	4 cut(s)	329, 972, 1096, 1118
BstSFI	CTRYAG	2 cut(s)	358, 364
BstUI	CGCG	1 cut(s)	413
BstV1I	GCAGC	5 cut(s)	332, 415, 728, 923, 1045
BstV2I	GAAGAC	1 cut(s)	120
BstX2I	RGATCY	2 cut(s)	184, 870
BstYI	RGATCY	2 cut(s)	184, 870
BtgI	CCRYGG	3 cut(s)	252, 386, 1106
BtsCI	GGATG	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	625, 855
Cfr13I	GGNCC	1 cut(s)	853
Csp6I	GTAC	1 cut(s)	694
CviAII	CATG	3 cut(s)	387, 724, 1107
CviQI	GTAC	1 cut(s)	694
DdeI	CTNAG	2 cut(s)	224, 284
DpnI	GATC	5 cut(s)	186, 258, 750, 831, 872
DpnII	GATC	5 cut(s)	184, 256, 748, 829, 870
DrdI	GACNNNNNNGTC	1 cut(s)	228
DseDI	GACNNNNNNGTC	1 cut(s)	228
Eam1104I	CTCTTC	5 cut(s)	72, 124, 203, 462, 1065
EarI	CTCTTC	5 cut(s)	72, 124, 203, 462, 1065
Eco130I	CCWWGG	3 cut(s)	386, 804, 1106
Eco47I	GGWCC	1 cut(s)	853
Eco57I	CTGAAG	2 cut(s)	380, 1089
Eco88I	CYCGRG	1 cut(s)	545
EcoT14I	CCWWGG	3 cut(s)	386, 804, 1106
EcoT22I	ATGCAT	1 cut(s)	561
ErhI	CCWWGG	3 cut(s)	386, 804, 1106
Esp3I	CGTCTC	1 cut(s)	659
FaeI	CATG	3 cut(s)	390, 727, 1110
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FaqI	GGGAC	4 cut(s)	101, 437, 621, 1012
FatI	CATG	3 cut(s)	386, 723, 1106
FauI	CCCGC	1 cut(s)	1038
FblI	GTMKAC	2 cut(s)	539, 585
Fnu4HI	GCNGC	6 cut(s)	321, 429, 714, 717, 937, 1034
FokI	GGATG	1 cut(s)	403
Fsp4HI	GCNGC	6 cut(s)	321, 429, 714, 717, 937, 1034
FspBI	CTAG	1 cut(s)	464
GluI	GCNGC	6 cut(s)	321, 429, 714, 717, 937, 1034
Hin1II	CATG	3 cut(s)	390, 727, 1110
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	9 cut(s)	7, 222, 280, 288, 532, 677, 901, 908, 983
HphI	GGTGA	1 cut(s)	826
Hpy166II	GTNNAC	5 cut(s)	292, 540, 586, 853, 866
Hpy188I	TCNGA	3 cut(s)	12, 285, 676
Hpy188III	TCNNGA	8 cut(s)	56, 233, 344, 464, 545, 598, 681, 905
Hpy8I	GTNNAC	5 cut(s)	292, 540, 586, 853, 866
Hpy99I	CGWCG	4 cut(s)	971, 1021, 1024, 1027
HpyAV	CCTTC	2 cut(s)	7, 89
HpyCH4III	ACNGT	2 cut(s)	653, 929
HpyCH4IV	ACGT	1 cut(s)	1016
HpyCH4V	TGCA	5 cut(s)	157, 559, 950, 1005, 1099
HpyF10VI	GCNNNNNNNGC	4 cut(s)	329, 972, 1096, 1118
HpyF3I	CTNAG	2 cut(s)	224, 284
HpySE526I	ACGT	1 cut(s)	1016
Hsp92II	CATG	3 cut(s)	390, 727, 1110
KpnI	GGTACC	1 cut(s)	697
Kzo9I	GATC	5 cut(s)	184, 256, 748, 829, 870
LmnI	GCTCC	2 cut(s)	523, 1064
LpnPI	CCDG	5 cut(s)	157, 173, 583, 613, 861
Lsp1109I	GCAGC	5 cut(s)	332, 415, 728, 923, 1045
LweI	GCATC	8 cut(s)	49, 381, 546, 568, 717, 867, 937, 1108
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	1 cut(s)	1016
MaeIII	GTNAC	2 cut(s)	190, 902
MalI	GATC	5 cut(s)	186, 258, 750, 831, 872
MboI	GATC	5 cut(s)	184, 256, 748, 829, 870
MflI	RGATCY	2 cut(s)	184, 870
MluCI	AATT	3 cut(s)	43, 573, 732
MlyI	GAGTC	3 cut(s)	216, 297, 910
MmeI	TCCRAC	2 cut(s)	257, 865
Mph1103I	ATGCAT	1 cut(s)	561
MseI	TTAA	3 cut(s)	612, 795, 800
MspA1I	CMGCKG	2 cut(s)	228, 323
MspCI	CTTAAG	1 cut(s)	611
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	4 cut(s)	329, 972, 1096, 1118
NcoI	CCATGG	2 cut(s)	386, 1106
NdeII	GATC	5 cut(s)	184, 256, 748, 829, 870
NlaIII	CATG	3 cut(s)	390, 727, 1110
NlaIV	GGNNCC	1 cut(s)	695
NmuCI	GTSAC	1 cut(s)	902
NsiI	ATGCAT	1 cut(s)	561
PaeR7I	CTCGAG	1 cut(s)	545
PcsI	WCGNNNNNNNCGW	2 cut(s)	992, 1022
PfeI	GAWTC	6 cut(s)	7, 280, 532, 677, 908, 983
PkrI	GCNGC	6 cut(s)	322, 430, 715, 718, 938, 1035
PleI	GAGTC	3 cut(s)	216, 296, 909
PpsI	GAGTC	3 cut(s)	216, 296, 909
PspN4I	GGNNCC	1 cut(s)	695
PspPI	GGNCC	1 cut(s)	853
PsuI	RGATCY	2 cut(s)	184, 870
PvuII	CAGCTG	2 cut(s)	228, 323
RsaI	GTAC	1 cut(s)	695
RsaNI	GTAC	1 cut(s)	694
SaqAI	TTAA	3 cut(s)	612, 795, 800
SatI	GCNGC	6 cut(s)	321, 429, 714, 717, 937, 1034
Sau3AI	GATC	5 cut(s)	184, 256, 748, 829, 870
Sau96I	GGNCC	1 cut(s)	853
SchI	GAGTC	3 cut(s)	216, 297, 910
SfaNI	GCATC	8 cut(s)	49, 381, 546, 568, 717, 867, 937, 1108
SfcI	CTRYAG	2 cut(s)	358, 364
Sfr274I	CTCGAG	1 cut(s)	545
SinI	GGWCC	1 cut(s)	853
SlaI	CTCGAG	1 cut(s)	545
SmlI	CTYRAG	2 cut(s)	545, 611
SmoI	CTYRAG	2 cut(s)	545, 611
Sse9I	AATT	3 cut(s)	43, 573, 732
SsiI	CCGC	3 cut(s)	714, 856, 1031
SspMI	CTAG	1 cut(s)	464
StyI	CCWWGG	3 cut(s)	386, 804, 1106
TaaI	ACNGT	2 cut(s)	653, 929
TaiI	ACGT	1 cut(s)	1019
TaqI	TCGA	5 cut(s)	234, 259, 345, 438, 546
TasI	AATT	3 cut(s)	43, 573, 732
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	6 cut(s)	7, 280, 532, 677, 908, 983
Tru1I	TTAA	3 cut(s)	612, 795, 800
Tru9I	TTAA	3 cut(s)	612, 795, 800
TscAI	CASTG	2 cut(s)	632, 855
TseFI	GTSAC	1 cut(s)	902
TseI	GCWGC	5 cut(s)	320, 428, 716, 936, 1033
Tsp45I	GTSAC	1 cut(s)	902
TspDTI	ATGAA	5 cut(s)	108, 195, 343, 756, 900
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	2 cut(s)	632, 855
Vha464I	CTTAAG	1 cut(s)	611
VpaK11BI	GGWCC	1 cut(s)	853
XbaI	TCTAGA	1 cut(s)	463
XcmI	CCANNNNNNNNNTGG	1 cut(s)	517
XhoI	CTCGAG	1 cut(s)	545
XmiI	GTMKAC	2 cut(s)	539, 585
XspI	CTAG	1 cut(s)	464
Zsp2I	ATGCAT	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.