Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Reverse (-)

10897543 .. 10899275

Gene Structure 1733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG072100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAGCTTTTGGTGCTCTCAACTCTTCAATGGAGGATGCACCCAGTGACTCCAATCTCTTTCCTTGACCACATCATAAGAAGGCTTGGATTGAAGACTAGTCTTCATTGGGAGTTTCTGAAGCGCTGTGAGAGTCTGCTTCTGTCTTTGGTGTTGGATTCAAGATGCATTGGTTATCTCCCTTCTGTTTTGGCCACTGCTACAATGATGAGGGTCATAGACCTTGTTGAGCCTTGTAAGGCTGTGGAATACCAAACCCAACTTCTGGGGGTCCTCAAAATAAGCAAGGAGAAGGTGAATGACTGTTATACCCTCATCCTTGAGATGTCAAACTATGGCTGCAAGAGCAACCCCTTTAAACGCAAGCATGCGCAAATCCCAGGGAGCCCAAGTGGAGTGATTGATGCATTCTTCAGTTCTGAAAGCTCAAATGACTCCTGGGCTGTGGTTTCATCGGTTACTTCGTCGCCGGAGCCACAGTTCAAGAAGATCAAAGCAGAGGCTTCATCACTCAACAGGCTCTTGGGCATTGTTGGTAGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

181

Amino Acids

20.17

Weight (kDa)

8.83

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_C	PF02984	16 - 124	1.3e-17	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	372
AccB7I	CCANNNNNTGG	1 cut(s)	265
AcoI	YGGCCR	1 cut(s)	192
AcuI	CTGAAG	2 cut(s)	140, 397
AdeI	CACNNNGTG	1 cut(s)	46
AfeI	AGCGCT	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	4 cut(s)	29, 94, 162, 484
AhlI	ACTAGT	1 cut(s)	98
AjnI	CCWGG	2 cut(s)	379, 437
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AloI	GAACNNNNNNTCC	2 cut(s)	464, 496
AluBI	AGCT	2 cut(s)	7, 426
AluI	AGCT	2 cut(s)	7, 426
Alw21I	GWGCWC	1 cut(s)	18
Aor51HI	AGCGCT	1 cut(s)	125
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	339
AspLEI	GCGC	2 cut(s)	126, 373
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	271
BalI	TGGCCA	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	389
BbsI	GAAGAC	2 cut(s)	95, 101
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	326
BciT130I	CCWGG	2 cut(s)	381, 439
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	127
BisI	GCNGC	1 cut(s)	340
BlsI	GCNGC	1 cut(s)	341
Bme1390I	CCNGG	2 cut(s)	381, 439
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	3 cut(s)	272, 386, 474
BmrFI	CCNGG	2 cut(s)	381, 439
BmrI	ACTGGG	1 cut(s)	38
BmsI	GCATC	3 cut(s)	27, 155, 394
BmuI	ACTGGG	1 cut(s)	38
BpiI	GAAGAC	2 cut(s)	95, 101
BpuEI	CTTGAG	1 cut(s)	341
BsaJI	CCNNGG	3 cut(s)	379, 380, 438
BsaXI	ACNNNNNCTCC	4 cut(s)	376, 406, 464, 494
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	44
BseBI	CCWGG	2 cut(s)	381, 439
BseDI	CCNNGG	3 cut(s)	379, 380, 438
BseGI	GGATG	2 cut(s)	42, 315
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseNI	ACTGG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	326
BshFI	GGCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	1 cut(s)	470
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	525
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	194
Bsp1286I	GDGCHC	2 cut(s)	18, 389
Bsp143I	GATC	1 cut(s)	489
BspANI	GGCC	1 cut(s)	194
BspLI	GGNNCC	3 cut(s)	272, 386, 474
BsrI	ACTGG	1 cut(s)	44
BssECI	CCNNGG	3 cut(s)	379, 380, 438
BssMI	GATC	1 cut(s)	489
Bst2UI	CCWGG	2 cut(s)	381, 439
Bst4CI	ACNGT	2 cut(s)	305, 480
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	365, 369
BstF5I	GGATG	2 cut(s)	42, 315
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	2 cut(s)	126, 373
BstKTI	GATC	1 cut(s)	492
BstMBI	GATC	1 cut(s)	489
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 345
BstNI	CCWGG	2 cut(s)	381, 439
BstNSI	RCATGY	1 cut(s)	371
BstSCI	CCNGG	2 cut(s)	379, 437
BstV1I	GCAGC	1 cut(s)	326
BstV2I	GAAGAC	2 cut(s)	95, 101
BsuRI	GGCC	1 cut(s)	194
BtsCI	GGATG	2 cut(s)	42, 315
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	2 cut(s)	51, 195
Cac8I	GCNNGC	2 cut(s)	365, 369
CfoI	GCGC	2 cut(s)	126, 373
Cfr13I	GGNCC	1 cut(s)	271
CviAII	CATG	1 cut(s)	368
DpnI	GATC	1 cut(s)	491
DpnII	GATC	1 cut(s)	489
DraI	TTTAAA	1 cut(s)	358
DraIII	CACNNNGTG	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	271
Eco47III	AGCGCT	1 cut(s)	125
Eco57I	CTGAAG	2 cut(s)	140, 397
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	379, 437
EcoT22I	ATGCAT	2 cut(s)	170, 409
EcoT38I	GRGCYC	1 cut(s)	389
FaeI	CATG	1 cut(s)	371
FaiI	YATR	5 cut(s)	77, 218, 309, 336, 369
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	1 cut(s)	367
Fnu4HI	GCNGC	1 cut(s)	340
FokI	GGATG	2 cut(s)	49, 302
FriOI	GRGCYC	1 cut(s)	389
Fsp4HI	GCNGC	1 cut(s)	340
FspBI	CTAG	1 cut(s)	99
FspI	TGCGCA	1 cut(s)	372
GlaI	GCGC	2 cut(s)	125, 372
GluI	GCNGC	1 cut(s)	340
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	1 cut(s)	470
HhaI	GCGC	2 cut(s)	126, 373
Hin1II	CATG	1 cut(s)	371
Hin6I	GCGC	2 cut(s)	124, 371
HinP1I	GCGC	2 cut(s)	124, 371
HinfI	GANTC	4 cut(s)	49, 133, 158, 434
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	120, 421
Hpy188III	TCNNGA	2 cut(s)	162, 484
Hpy99I	CGWCG	1 cut(s)	469
HpyAV	CCTTC	3 cut(s)	75, 192, 286
HpyCH4III	ACNGT	2 cut(s)	305, 480
HpyCH4V	TGCA	4 cut(s)	40, 168, 342, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 345
Hsp92II	CATG	1 cut(s)	371
HspAI	GCGC	2 cut(s)	124, 371
Kzo9I	GATC	1 cut(s)	489
LmnI	GCTCC	3 cut(s)	4, 384, 472
LpnPI	CCDG	8 cut(s)	57, 251, 366, 393, 424, 451, 483, 502
Lsp1109I	GCAGC	1 cut(s)	326
LweI	GCATC	3 cut(s)	27, 155, 394
MaeI	CTAG	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	46, 457
MalI	GATC	1 cut(s)	491
MboI	GATC	1 cut(s)	489
MboII	GAAGA	5 cut(s)	17, 95, 106, 403, 499
MhlI	GDGCHC	2 cut(s)	18, 389
MlsI	TGGCCA	1 cut(s)	194
MluNI	TGGCCA	1 cut(s)	194
MlyI	GAGTC	3 cut(s)	43, 142, 428
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	5 cut(s)	27, 204, 284, 323, 493
Mox20I	TGGCCA	1 cut(s)	194
Mph1103I	ATGCAT	2 cut(s)	170, 409
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	1 cut(s)	357
Msp20I	TGGCCA	1 cut(s)	194
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	2 cut(s)	381, 439
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	2 cut(s)	381, 439
MwoI	GCNNNNNNNGC	2 cut(s)	13, 345
NdeII	GATC	1 cut(s)	489
NlaIII	CATG	1 cut(s)	371
NlaIV	GGNNCC	3 cut(s)	272, 386, 474
NmuCI	GTSAC	1 cut(s)	46
NsbI	TGCGCA	1 cut(s)	372
NsiI	ATGCAT	2 cut(s)	170, 409
NspI	RCATGY	1 cut(s)	371
PaeI	GCATGC	1 cut(s)	371
PasI	CCCWGGG	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	1 cut(s)	461
PctI	GAATGC	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	341
PleI	GAGTC	3 cut(s)	43, 141, 428
PpsI	GAGTC	3 cut(s)	43, 141, 428
PpuMI	RGGWCCY	1 cut(s)	271
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	2 cut(s)	379, 437
PspGI	CCWGG	2 cut(s)	379, 437
PspN4I	GGNNCC	3 cut(s)	272, 386, 474
PspPI	GGNCC	1 cut(s)	271
PspPPI	RGGWCCY	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	1 cut(s)	340
Sau3AI	GATC	1 cut(s)	489
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	3 cut(s)	43, 142, 428
ScrFI	CCNGG	2 cut(s)	381, 439
SduI	GDGCHC	2 cut(s)	18, 389
SetI	ASST	4 cut(s)	9, 225, 297, 428
SfaNI	GCATC	3 cut(s)	27, 155, 394
SinI	GGWCC	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SpeI	ACTAGT	1 cut(s)	98
SphI	GCATGC	1 cut(s)	371
SspMI	CTAG	1 cut(s)	99
StyD4I	CCNGG	2 cut(s)	379, 437
TaaI	ACNGT	2 cut(s)	305, 480
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	2 cut(s)	51, 202
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	339
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	95, 441, 495
TspRI	CASTG	2 cut(s)	51, 202
Van91I	CCANNNNNTGG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	271
XceI	RCATGY	1 cut(s)	371
XspI	CTAG	1 cut(s)	99
Zsp2I	ATGCAT	2 cut(s)	170, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.