Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8197358.1

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 613

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8197358.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atggttcagctcgtctctgttgcttgcatctctctggctgccaaagtggaagagacccaagtccctcttcttctagaccttcaagtggaggacaccaagtatgttttcgaggccaaaacggttcaaagaatggagcttttggtgctctcaactcttcaatggaggatgcacccagtgactccaatctctttccttgaccacatcataagaaggcttggattgaagactagtcttcattgggagtttctgaagcgctgtgagagtctgcttctgtctttggtgttggattcaagatgcattggttatctcccttctgttttggccactgctacaatgatgagggtcatagaccttgttgagcct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

121

Amino Acids

13.81

Weight (kDa)

6.27

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	321
AcuI	CTGAAG	1 cut(s)	269
AdeI	CACNNNGTG	1 cut(s)	175
AfeI	AGCGCT	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	5 cut(s)	83, 125, 158, 223, 291
AhlI	ACTAGT	1 cut(s)	227
AjuI	GAANNNNNNNTTGG	4 cut(s)	51, 83, 89, 121
AluBI	AGCT	2 cut(s)	10, 136
AluI	AGCT	2 cut(s)	10, 136
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	2 cut(s)	19, 47
Aor51HI	AGCGCT	1 cut(s)	254
AoxI	GGCC	2 cut(s)	111, 321
ApeKI	GCWGC	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	255
BalI	TGGCCA	1 cut(s)	323
BbsI	GAAGAC	2 cut(s)	224, 230
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	25
BcoDI	GTCTC	2 cut(s)	19, 47
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	2 cut(s)	74, 228
BfoI	RGCGCY	1 cut(s)	256
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
BmrI	ACTGGG	1 cut(s)	167
BmsI	GCATC	3 cut(s)	36, 156, 284
BmuI	ACTGGG	1 cut(s)	167
BoxI	GACNNNNGTC	1 cut(s)	59
BpiI	GAAGAC	2 cut(s)	224, 230
BsaI	GGTCTC	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	173
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	25
BshFI	GGCC	2 cut(s)	113, 323
BsiHKAI	GWGCWC	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	2 cut(s)	19, 47
BsmBI	CGTCTC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	113, 323
Bso31I	GGTCTC	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	147
BspANI	GGCC	2 cut(s)	113, 323
BspTNI	GGTCTC	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	3 cut(s)	45, 72, 159
BstC8I	GCNNGC	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	255
BstMAI	GTCTC	2 cut(s)	19, 47
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstPAI	GACNNNNGTC	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	25
BstV2I	GAAGAC	2 cut(s)	224, 230
BsuRI	GGCC	2 cut(s)	113, 323
BtsCI	GGATG	1 cut(s)	171
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	2 cut(s)	180, 324
Cac8I	GCNNGC	1 cut(s)	25
CfoI	GCGC	1 cut(s)	255
CviJI	RGCY	7 cut(s)	10, 38, 113, 136, 214, 323, 361
CviKI_1	RGCY	7 cut(s)	10, 38, 113, 136, 214, 323, 361
DraIII	CACNNNGTG	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	321
Eam1104I	CTCTTC	3 cut(s)	45, 72, 159
EarI	CTCTTC	3 cut(s)	45, 72, 159
Eco31I	GGTCTC	1 cut(s)	47
Eco47III	AGCGCT	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	269
EcoT22I	ATGCAT	1 cut(s)	299
Esp3I	CGTCTC	1 cut(s)	19
FaiI	YATR	3 cut(s)	102, 206, 347
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	1 cut(s)	47
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	1 cut(s)	178
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	2 cut(s)	74, 228
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	256
HaeIII	GGCC	2 cut(s)	113, 323
HhaI	GCGC	1 cut(s)	255
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HinfI	GANTC	3 cut(s)	178, 262, 287
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	2 cut(s)	74, 291
HpyAV	CCTTC	3 cut(s)	89, 204, 321
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	3 cut(s)	27, 169, 297
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HspAI	GCGC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	2 cut(s)	20, 186
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	3 cut(s)	36, 156, 284
MaeI	CTAG	2 cut(s)	74, 228
MaeIII	GTNAC	1 cut(s)	175
MboII	GAAGA	6 cut(s)	59, 62, 62, 146, 224, 235
MhlI	GDGCHC	1 cut(s)	147
MlsI	TGGCCA	1 cut(s)	323
MluNI	TGGCCA	1 cut(s)	323
MlyI	GAGTC	2 cut(s)	172, 271
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	5 cut(s)	75, 82, 103, 156, 333
Mox20I	TGGCCA	1 cut(s)	323
Mph1103I	ATGCAT	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	323
Msp20I	TGGCCA	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	1 cut(s)	40
PleI	GAGTC	2 cut(s)	172, 270
PpsI	GAGTC	2 cut(s)	172, 270
PshAI	GACNNNNGTC	1 cut(s)	59
SatI	GCNGC	1 cut(s)	39
SchI	GAGTC	2 cut(s)	172, 271
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	4 cut(s)	12, 81, 138, 354
SfaNI	GCATC	3 cut(s)	36, 156, 284
SpeI	ACTAGT	1 cut(s)	227
SspMI	CTAG	2 cut(s)	74, 228
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	287
TscAI	CASTG	2 cut(s)	180, 331
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	224
TspRI	CASTG	2 cut(s)	180, 331
XbaI	TCTAGA	1 cut(s)	73
XspI	CTAG	2 cut(s)	74, 228
Zsp2I	ATGCAT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.