Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Forward (+)

2941663 .. 2943694

Gene Structure 2032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00159920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGAAGAAGATGGATCAGCCATTTCTCTTGGACGCTCTGTTCTGCTCGGAACAACATTTGGATGAGGAACAGCAAGAAGCTACGGTGTTGGACTATTCAGAGGAATTTGTTGAAGATAGTTCTTGTTATAGCAACAACTCTTCGTCTTCTAAACGACAACAACAACAACCAATAAAGTCCCCTATCTTGCTAGAGCAAGACCTGTTCTGGGACGATGAGGAACTCACCTCTCTGTTGTCGAAAGAGAAACTGAATCAAGATCGGAAAATCCTGAATCCCTACTCGTCTTTGGCCGGGGCTCGTAAGGAGGCTGTGGATTGGATGCTGAGGGTCAATGCCCACTACTCTTTCTCTGCTCTCACTGCGGTTCTGGCCGTCGATTACCTCGATAGGTTTTTCTTCAGCTTCCAATTTCAGACCGAGAAGCCATGGATGACACAGCTCGCTGCCGTGGCTTGTATCTCCCTTGCTGCAAAAGTGGAGGAGACCCAAGTCCCCTTATTACTAGACTTCCAAGTTGAGGACAGTAAGTATGTGTTCGAAGCTAAAACGATTAACAGAATGGAGATTTTGGTTCTCTCAACTCTTGATTGGAAGATGAATCCGGTGACCCCAATTTCGTTTCTTGATTACATGACAAGGAGGTTTGGTTTGAAAGACCATCTCTGCTGGGAATTCCTCAAGAGATGTGAGCTCATCCTTGTCAATCTCATCTCAGATTCTAGGTTCTTGTCTTTCCTTCCATCCGTAGTGGCTACTGCCACAATGCTGCACGTTGTCAATAACATTGAGCCTTGTCTTCAAGTTGAGTATGAAAACCAGCTCTTGACTATTCTCGGAATCGACAAGGGTTTGGCGGATGATTGCTCTAAGCTCATAATGGAACTGTCATCATCGTGGTCGAGAAACAAGCGCAAGTTTGGTTACTCAATTCCTGGGAGCCCAAATGGAGTCATTGACATATCATTCAGCTCGGACAGCTCCAATGACTCATGGGCCGCGGCCTCATCAGTCTCGTCCTCACCGGAACCTCTGTCCAAGAAAAGCAGGGCTCTGGAAAAGCAGCTTCTGGAGAAGCTCAACCAAACAGCAAATGCAGCAGCAGATATTCTCAGCCTTCCACGCCTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

377

Amino Acids

42.79

Weight (kDa)

4.84

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	97 - 201	2.2e-25	Cyclin, N-terminal domain
Cyclin_C	PF02984	203 - 304	4.3e-13	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1001
AciI	CCGC	4 cut(s)	365, 857, 999, 1001
AclWI	GGATC	1 cut(s)	21
AcoI	YGGCCR	2 cut(s)	291, 372
AcsI	RAATTY	2 cut(s)	104, 674
AcuI	CTGAAG	1 cut(s)	385
AfiI	CCNNNNNNNGG	2 cut(s)	208, 520
AgsI	TTSAA	3 cut(s)	113, 655, 803
AjnI	CCWGG	1 cut(s)	934
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
Alw21I	GWGCWC	1 cut(s)	696
Alw26I	GTCTC	2 cut(s)	479, 1018
AlwI	GGATC	1 cut(s)	21
AlwNI	CAGNNNCTG	1 cut(s)	1069
AoxI	GGCC	4 cut(s)	291, 372, 996, 1002
ApeKI	GCWGC	6 cut(s)	446, 470, 769, 1063, 1097, 1100
ApoI	RAATTY	2 cut(s)	104, 674
ArsI	GACNNNNNNTTYG	2 cut(s)	601, 633
AspLEI	GCGC	1 cut(s)	915
AspS9I	GGNCC	1 cut(s)	996
AsuC2I	CCSGG	1 cut(s)	295
AsuHPI	GGTGA	3 cut(s)	217, 619, 1014
AsuII	TTCGAA	1 cut(s)	540
BanII	GRGCYC	4 cut(s)	301, 696, 944, 1054
BbsI	GAAGAC	2 cut(s)	138, 791
Bbv12I	GWGCWC	1 cut(s)	696
BbvCI	CCTCAGC	1 cut(s)	326
BbvI	GCAGC	6 cut(s)	433, 457, 756, 1075, 1109, 1112
BccI	CCATC	3 cut(s)	4, 669, 751
BceAI	ACGGC	2 cut(s)	359, 434
BciT130I	CCWGG	1 cut(s)	936
BcnI	CCSGG	1 cut(s)	295
BcoDI	GTCTC	2 cut(s)	479, 1018
BfaI	CTAG	3 cut(s)	191, 506, 723
BisI	GCNGC	8 cut(s)	447, 471, 770, 999, 1002, 1064, 1098, 1101
BlsI	GCNGC	8 cut(s)	448, 472, 771, 1000, 1003, 1065, 1099, 1102
Bme1390I	CCNGG	2 cut(s)	295, 936
BmgT120I	GGNCC	1 cut(s)	996
BmiI	GGNNCC	2 cut(s)	941, 1029
BmrFI	CCNGG	2 cut(s)	295, 936
BmsI	GCATC	1 cut(s)	312
BoxI	GACNNNNGTC	1 cut(s)	491
BpiI	GAAGAC	2 cut(s)	138, 791
BpmI	CTGGAG	1 cut(s)	1091
Bpu10I	CCTNAGC	1 cut(s)	326
Bpu14I	TTCGAA	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	295
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	5 cut(s)	294, 428, 450, 935, 999
BsaWI	WCCGGW	2 cut(s)	604, 1024
BsaXI	ACNNNNNCTCC	2 cut(s)	634, 664
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 520
BseBI	CCWGG	1 cut(s)	936
BseDI	CCNNGG	5 cut(s)	294, 428, 450, 935, 999
BseGI	GGATG	6 cut(s)	67, 327, 438, 696, 743, 865
BseLI	CCNNNNNNNGG	2 cut(s)	208, 520
BseMII	CTCAG	3 cut(s)	317, 729, 1126
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	6 cut(s)	433, 457, 756, 1075, 1109, 1112
BseYI	CCCAGC	1 cut(s)	669
BsgI	GTGCAG	1 cut(s)	755
Bsh1236I	CGCG	1 cut(s)	1001
BshFI	GGCC	4 cut(s)	293, 374, 998, 1004
BsiHKAI	GWGCWC	1 cut(s)	696
BsiSI	CCGG	3 cut(s)	294, 605, 1025
BslFI	GGGAC	3 cut(s)	163, 224, 479
BslI	CCNNNNNNNGG	2 cut(s)	208, 520
BsmAI	GTCTC	2 cut(s)	479, 1018
BsmFI	GGGAC	3 cut(s)	163, 224, 479
BsnI	GGCC	4 cut(s)	293, 374, 998, 1004
Bso31I	GGTCTC	1 cut(s)	479
Bsp119I	TTCGAA	1 cut(s)	540
Bsp1286I	GDGCHC	4 cut(s)	301, 696, 944, 1054
Bsp143I	GATC	2 cut(s)	13, 259
Bsp19I	CCATGG	1 cut(s)	428
BspACI	CCGC	4 cut(s)	365, 857, 999, 1001
BspANI	GGCC	4 cut(s)	293, 374, 998, 1004
BspCNI	CTCAG	3 cut(s)	318, 728, 1125
BspFNI	CGCG	1 cut(s)	1001
BspLI	GGNNCC	2 cut(s)	941, 1029
BspPI	GGATC	1 cut(s)	21
BspT104I	TTCGAA	1 cut(s)	540
BspTNI	GGTCTC	1 cut(s)	479
BssECI	CCNNGG	5 cut(s)	294, 428, 450, 935, 999
BssMI	GATC	2 cut(s)	13, 259
BssT1I	CCWWGG	1 cut(s)	428
Bst2UI	CCWGG	1 cut(s)	936
Bst4CI	ACNGT	3 cut(s)	85, 527, 888
Bst6I	CTCTTC	1 cut(s)	145
BstBI	TTCGAA	1 cut(s)	540
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	4 cut(s)	326, 715, 870, 1112
BstDSI	CCRYGG	3 cut(s)	428, 450, 999
BstEII	GGTNACC	1 cut(s)	607
BstF5I	GGATG	6 cut(s)	67, 327, 438, 696, 743, 865
BstFNI	CGCG	1 cut(s)	1001
BstHHI	GCGC	1 cut(s)	915
BstKTI	GATC	2 cut(s)	16, 262
BstMAI	GTCTC	2 cut(s)	479, 1018
BstMBI	GATC	2 cut(s)	13, 259
BstMWI	GCNNNNNNNGC	6 cut(s)	362, 371, 452, 978, 1097, 1122
BstNI	CCWGG	1 cut(s)	936
BstPAI	GACNNNNGTC	1 cut(s)	491
BstPI	GGTNACC	1 cut(s)	607
BstSCI	CCNGG	2 cut(s)	293, 934
BstUI	CGCG	1 cut(s)	1001
BstV1I	GCAGC	6 cut(s)	433, 457, 756, 1075, 1109, 1112
BstV2I	GAAGAC	2 cut(s)	138, 791
BsuRI	GGCC	4 cut(s)	293, 374, 998, 1004
BtgI	CCRYGG	3 cut(s)	428, 450, 999
BtsCI	GGATG	6 cut(s)	67, 327, 438, 696, 743, 865
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	444
CaiI	CAGNNNCTG	1 cut(s)	1069
CfoI	GCGC	1 cut(s)	915
Cfr13I	GGNCC	1 cut(s)	996
Cfr42I	CCGCGG	1 cut(s)	1002
CseI	GACGC	1 cut(s)	41
CviAII	CATG	3 cut(s)	429, 634, 993
DdeI	CTNAG	4 cut(s)	326, 715, 870, 1112
DpnI	GATC	2 cut(s)	15, 261
DpnII	GATC	2 cut(s)	13, 259
EaeI	YGGCCR	2 cut(s)	291, 372
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
EciI	GGCGGA	1 cut(s)	872
Ecl136II	GAGCTC	1 cut(s)	694
Eco130I	CCWWGG	1 cut(s)	428
Eco24I	GRGCYC	4 cut(s)	301, 696, 944, 1054
Eco31I	GGTCTC	1 cut(s)	479
Eco53kI	GAGCTC	1 cut(s)	694
Eco57I	CTGAAG	1 cut(s)	385
Eco91I	GGTNACC	1 cut(s)	607
EcoICRI	GAGCTC	1 cut(s)	694
EcoO65I	GGTNACC	1 cut(s)	607
EcoRI	GAATTC	1 cut(s)	674
EcoRII	CCWGG	1 cut(s)	934
EcoT14I	CCWWGG	1 cut(s)	428
EcoT38I	GRGCYC	4 cut(s)	301, 696, 944, 1054
ErhI	CCWWGG	1 cut(s)	428
FaeI	CATG	3 cut(s)	432, 637, 996
FaiI	YATR	8 cut(s)	129, 430, 534, 635, 813, 878, 962, 994
FaqI	GGGAC	3 cut(s)	163, 224, 479
FatI	CATG	3 cut(s)	428, 633, 992
Fnu4HI	GCNGC	8 cut(s)	447, 471, 770, 999, 1002, 1064, 1098, 1101
FokI	GGATG	6 cut(s)	74, 334, 445, 683, 730, 872
FriOI	GRGCYC	4 cut(s)	301, 696, 944, 1054
Fsp4HI	GCNGC	8 cut(s)	447, 471, 770, 999, 1002, 1064, 1098, 1101
FspBI	CTAG	3 cut(s)	191, 506, 723
GlaI	GCGC	1 cut(s)	914
GluI	GCNGC	8 cut(s)	447, 471, 770, 999, 1002, 1064, 1098, 1101
GsaI	CCCAGC	1 cut(s)	673
GsuI	CTGGAG	1 cut(s)	1091
HaeIII	GGCC	4 cut(s)	293, 374, 998, 1004
HapII	CCGG	3 cut(s)	294, 605, 1025
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	915
Hin1II	CATG	3 cut(s)	432, 637, 996
Hin6I	GCGC	1 cut(s)	913
HinP1I	GCGC	1 cut(s)	913
HinfI	GANTC	7 cut(s)	253, 274, 601, 719, 840, 951, 989
HpaII	CCGG	3 cut(s)	294, 605, 1025
HphI	GGTGA	3 cut(s)	217, 619, 1014
Hpy188I	TCNGA	7 cut(s)	49, 100, 264, 417, 718, 839, 976
Hpy188III	TCNNGA	9 cut(s)	257, 271, 587, 626, 682, 826, 903, 1055, 1070
Hpy99I	CGWCG	1 cut(s)	380
HpyAV	CCTTC	2 cut(s)	749, 1127
HpyCH4III	ACNGT	3 cut(s)	85, 527, 888
HpyCH4IV	ACGT	1 cut(s)	774
HpyCH4V	TGCA	3 cut(s)	473, 772, 1097
HpyF10VI	GCNNNNNNNGC	6 cut(s)	362, 371, 452, 978, 1097, 1122
HpyF3I	CTNAG	4 cut(s)	326, 715, 870, 1112
HpySE526I	ACGT	1 cut(s)	774
Hsp92II	CATG	3 cut(s)	432, 637, 996
HspAI	GCGC	1 cut(s)	913
KspI	CCGCGG	1 cut(s)	1002
Kzo9I	GATC	2 cut(s)	13, 259
LmnI	GCTCC	2 cut(s)	939, 986
Lsp1109I	GCAGC	6 cut(s)	433, 457, 756, 1075, 1109, 1112
LweI	GCATC	1 cut(s)	312
MaeI	CTAG	3 cut(s)	191, 506, 723
MaeII	ACGT	1 cut(s)	774
MaeIII	GTNAC	2 cut(s)	607, 923
MalI	GATC	2 cut(s)	15, 261
MboI	GATC	2 cut(s)	13, 259
MboII	GAAGA	8 cut(s)	16, 19, 125, 132, 138, 391, 607, 791
MhlI	GDGCHC	4 cut(s)	301, 696, 944, 1054
MluCI	AATT	5 cut(s)	104, 410, 615, 674, 930
MlyI	GAGTC	2 cut(s)	960, 983
MmeI	TCCRAC	1 cut(s)	69
MseI	TTAA	1 cut(s)	555
MslI	CAYNNNNRTG	2 cut(s)	60, 895
MspA1I	CMGCKG	1 cut(s)	1001
MspI	CCGG	3 cut(s)	294, 605, 1025
MspR9I	CCNGG	2 cut(s)	295, 936
MvaI	CCWGG	1 cut(s)	936
MvnI	CGCG	1 cut(s)	1001
MwoI	GCNNNNNNNGC	6 cut(s)	362, 371, 452, 978, 1097, 1122
NciI	CCSGG	1 cut(s)	295
NcoI	CCATGG	1 cut(s)	428
NdeII	GATC	2 cut(s)	13, 259
NlaIII	CATG	3 cut(s)	432, 637, 996
NlaIV	GGNNCC	2 cut(s)	941, 1029
NmuCI	GTSAC	1 cut(s)	607
NspV	TTCGAA	1 cut(s)	540
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PfeI	GAWTC	5 cut(s)	253, 274, 601, 719, 840
PkrI	GCNGC	8 cut(s)	448, 472, 771, 1000, 1003, 1065, 1099, 1102
PleI	GAGTC	2 cut(s)	959, 983
PpsI	GAGTC	2 cut(s)	959, 983
PshAI	GACNNNNGTC	1 cut(s)	491
Psp124BI	GAGCTC	1 cut(s)	696
Psp6I	CCWGG	1 cut(s)	934
PspEI	GGTNACC	1 cut(s)	607
PspFI	CCCAGC	1 cut(s)	669
PspGI	CCWGG	1 cut(s)	934
PspN4I	GGNNCC	2 cut(s)	941, 1029
PspPI	GGNCC	1 cut(s)	996
PstNI	CAGNNNCTG	1 cut(s)	1069
RseI	CAYNNNNRTG	2 cut(s)	60, 895
SacI	GAGCTC	1 cut(s)	696
SacII	CCGCGG	1 cut(s)	1002
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	8 cut(s)	447, 471, 770, 999, 1002, 1064, 1098, 1101
Sau3AI	GATC	2 cut(s)	13, 259
Sau96I	GGNCC	1 cut(s)	996
SchI	GAGTC	2 cut(s)	960, 983
ScrFI	CCNGG	2 cut(s)	295, 936
SduI	GDGCHC	4 cut(s)	301, 696, 944, 1054
SfaNI	GCATC	1 cut(s)	312
Sfr303I	CCGCGG	1 cut(s)	1002
SfuI	TTCGAA	1 cut(s)	540
SgrBI	CCGCGG	1 cut(s)	1002
SmiMI	CAYNNNNRTG	2 cut(s)	60, 895
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	5 cut(s)	104, 410, 615, 674, 930
SsiI	CCGC	4 cut(s)	365, 857, 999, 1001
SspMI	CTAG	3 cut(s)	191, 506, 723
SstI	GAGCTC	1 cut(s)	696
StyD4I	CCNGG	2 cut(s)	293, 934
StyI	CCWWGG	1 cut(s)	428
TaaI	ACNGT	3 cut(s)	85, 527, 888
TaiI	ACGT	1 cut(s)	777
TaqI	TCGA	6 cut(s)	239, 378, 387, 540, 843, 902
TaqII	GACCGA	1 cut(s)	434
TasI	AATT	5 cut(s)	104, 410, 615, 674, 930
TauI	GCSGC	2 cut(s)	1001, 1004
TfiI	GAWTC	5 cut(s)	253, 274, 601, 719, 840
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	607
TseI	GCWGC	6 cut(s)	446, 470, 769, 1063, 1097, 1100
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	3 cut(s)	17, 614, 828
TspGWI	ACGGA	1 cut(s)	736
TspRI	CASTG	1 cut(s)	367
XapI	RAATTY	2 cut(s)	104, 674
XspI	CTAG	3 cut(s)	191, 506, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.