Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Reverse (-)

7738865 .. 7740999

Gene Structure 2135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1092900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGATCGAAAACATCATCATCAACTAGTAGAATCAAGTGAAGAACAAAACCCAGTTTTCCTTTTGGACGCTCTGTACTGCTCGGAGGAGCATTTGGTGGATGAGCAAGTGAGCCCAGTGGATTATTTCCCAGAAGAGGAATTAGTAGAAGACAGCTTTAACAGCAACGTTTCTTCGTTTAACCCAATAAAAGCTCCAATCTTAGTCGAGCAAGACCTGTTCTGGGATAATGAGGAGCTAATCTCTCTCTTATCCAAAGAATCGGAGCAAAACGAGCTCCAAAAACCCCTCCAAATCAGCCCCTCTCTGGCCGGAGCTCGCAGAGAGGCGGTGGATTGGATGCTGAGAGTCGCTTCCCACTACTCTTTCTCCGCCCTCACGGCGGTGCTCGCGGCGGATTACTTCGACAGGTTCTTGTCCAGCCTCCAACTTCAGGTTGAGAAGCCGTGGATGACCCAGCTCGCTGCCGTGGCTTGTATCTCTCTTGCTGCCAAGGTTGAGGAGACCCAAGTTCCCCTTTTGCTGGATTTCCAAGTGGAGGATAGCAAGTATGTGTTTGAAGCTAGAACAATCAAACGAATGGAGATTTTGGTGCTCTCAACTCTCCAATGGAAGATGAATCCTGTCACTCCGATTTCATTCATCGATTACATCACCCGAAGACTCGGTCTGAAAAACCATCTCTGCTGGGAAGTCCTCAAAAGATGTGAGCTCAACCTTCTGAGTCTAATTTCAGATTCTAGGTTCATGTCTTTTCTTCCATCTGTAGTTGCCACTGCCATAATGCTGCATGTTGTCAACAACATAGAACCGTGTCTACTTATGGAATACCAAAACCAGCTCCTGGGAATTCTCGGAATCGATAAGGACAAAGTGGATGAATGCTCGAAGCTCATCTCCGAATTAACATCTTCCGGAGGCAATGGCAGTGGCAAACAATCCAACAAGCGTAAGTTTGGTTCAGTTCCATGCAGTCCCAGTGGAGTGATGGATGTGTCATTTAGCTCTGATAGCTCGAATGATTCGTGGGCCACTGGATCATCGGTCTCATCCTCGCCGGAGCCTCTGTCGAAGAAGAGGAATTCCAACCACAACCGTAATGCAGATATCCCCGGCTTCATCCCTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

377

Amino Acids

42.26

Weight (kDa)

4.94

Isoelectric Point (pI)

59.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	85 - 207	7.5e-26	Cyclin, N-terminal domain
Cyclin_C	PF02984	209 - 321	7e-16	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	844
AccI	GTMKAC	1 cut(s)	817
AccII	CGCG	1 cut(s)	392
AccIII	TCCGGA	1 cut(s)	914
AciI	CCGC	5 cut(s)	329, 372, 383, 392, 395
AclI	AACGTT	1 cut(s)	168
AclWI	GGATC	2 cut(s)	12, 1045
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	2 cut(s)	849, 1081
AcuI	CTGAAG	1 cut(s)	416
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	8 cut(s)	136, 223, 307, 382, 433, 523, 538, 844
AgsI	TTSAA	1 cut(s)	560
AhlI	ACTAGT	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	843
AleI	CACNNNNGTG	1 cut(s)	383
Alw21I	GWGCWC	5 cut(s)	279, 319, 390, 597, 714
Alw26I	GTCTC	2 cut(s)	497, 1051
AlwI	GGATC	2 cut(s)	12, 1045
AlwNI	CAGNNNCTG	1 cut(s)	844
Aor13HI	TCCGGA	1 cut(s)	914
AoxI	GGCC	2 cut(s)	309, 1029
ApeKI	GCWGC	3 cut(s)	464, 488, 787
ApoI	RAATTY	2 cut(s)	849, 1081
ArsI	GACNNNNNNTTYG	2 cut(s)	652, 684
AspS9I	GGNCC	1 cut(s)	1029
AsuC2I	CCSGG	1 cut(s)	1113
AsuHPI	GGTGA	1 cut(s)	646
BanII	GRGCYC	4 cut(s)	116, 279, 319, 714
BbsI	GAAGAC	2 cut(s)	156, 667
Bbv12I	GWGCWC	5 cut(s)	279, 319, 390, 597, 714
BbvI	GCAGC	3 cut(s)	451, 475, 774
BccI	CCATC	3 cut(s)	687, 769, 982
BceAI	ACGGC	3 cut(s)	396, 430, 452
BciT130I	CCWGG	1 cut(s)	845
BcnI	CCSGG	1 cut(s)	1113
BcoDI	GTCTC	2 cut(s)	497, 1051
BcuI	ACTAGT	1 cut(s)	25
BfaI	CTAG	4 cut(s)	26, 564, 741, 1129
BfmI	CTRYAG	1 cut(s)	765
BglI	GCCNNNNNGGC	1 cut(s)	380
BisI	GCNGC	4 cut(s)	393, 465, 489, 788
BlsI	GCNGC	4 cut(s)	394, 466, 490, 789
Bme1390I	CCNGG	2 cut(s)	845, 1113
BmgT120I	GGNCC	1 cut(s)	1029
BmiI	GGNNCC	1 cut(s)	1062
BmrFI	CCNGG	2 cut(s)	845, 1113
BmrI	ACTGGG	3 cut(s)	47, 110, 972
BmsI	GCATC	1 cut(s)	330
BmuI	ACTGGG	3 cut(s)	47, 110, 972
BpiI	GAAGAC	2 cut(s)	156, 667
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
BpuMI	CCSGG	1 cut(s)	1113
Bsa29I	ATCGAT	2 cut(s)	645, 861
BsaI	GGTCTC	2 cut(s)	497, 1051
BsaJI	CCNNGG	5 cut(s)	446, 468, 492, 844, 1111
BsaWI	WCCGGW	1 cut(s)	914
BsaXI	ACNNNNNCTCC	4 cut(s)	353, 383, 1052, 1082
Bsc4I	CCNNNNNNNGG	8 cut(s)	136, 223, 307, 382, 433, 523, 538, 844
Bse1I	ACTGG	4 cut(s)	53, 116, 978, 1039
Bse3DI	GCAATG	1 cut(s)	928
BseAI	TCCGGA	1 cut(s)	914
BseBI	CCWGG	1 cut(s)	845
BseCI	ATCGAT	2 cut(s)	645, 861
BseDI	CCNNGG	5 cut(s)	446, 468, 492, 844, 1111
BseGI	GGATG	7 cut(s)	106, 345, 456, 883, 997, 1049, 1119
BseLI	CCNNNNNNNGG	8 cut(s)	136, 223, 307, 382, 433, 523, 538, 844
BseMI	GCAATG	1 cut(s)	928
BseMII	CTCAG	2 cut(s)	335, 713
BseNI	ACTGG	4 cut(s)	53, 116, 978, 1039
BseRI	GAGGAG	3 cut(s)	101, 248, 515
BseXI	GCAGC	3 cut(s)	451, 475, 774
BseYI	CCCAGC	2 cut(s)	456, 687
Bsh1236I	CGCG	1 cut(s)	392
BshFI	GGCC	2 cut(s)	311, 1031
BshVI	ATCGAT	2 cut(s)	645, 861
BsiHKAI	GWGCWC	5 cut(s)	279, 319, 390, 597, 714
BsiSI	CCGG	4 cut(s)	312, 915, 1058, 1113
BslFI	GGGAC	1 cut(s)	960
BslI	CCNNNNNNNGG	8 cut(s)	136, 223, 307, 382, 433, 523, 538, 844
BsmAI	GTCTC	2 cut(s)	497, 1051
BsmFI	GGGAC	1 cut(s)	960
BsmI	GAATGC	1 cut(s)	887
BsnI	GGCC	2 cut(s)	311, 1031
Bso31I	GGTCTC	2 cut(s)	497, 1051
Bsp1286I	GDGCHC	6 cut(s)	116, 279, 319, 390, 597, 714
Bsp13I	TCCGGA	1 cut(s)	914
Bsp143I	GATC	2 cut(s)	4, 1037
BspACI	CCGC	5 cut(s)	329, 372, 383, 392, 395
BspANI	GGCC	2 cut(s)	311, 1031
BspCNI	CTCAG	2 cut(s)	336, 714
BspDI	ATCGAT	2 cut(s)	645, 861
BspEI	TCCGGA	1 cut(s)	914
BspFNI	CGCG	1 cut(s)	392
BspLI	GGNNCC	1 cut(s)	1062
BspPI	GGATC	2 cut(s)	12, 1045
BspTNI	GGTCTC	2 cut(s)	497, 1051
BsrDI	GCAATG	1 cut(s)	928
BsrI	ACTGG	4 cut(s)	53, 116, 978, 1039
BssECI	CCNNGG	5 cut(s)	446, 468, 492, 844, 1111
BssMI	GATC	2 cut(s)	4, 1037
BssT1I	CCWWGG	1 cut(s)	492
Bst2UI	CCWGG	1 cut(s)	845
Bst4CI	ACNGT	2 cut(s)	813, 1097
Bst6I	CTCTTC	2 cut(s)	129, 1070
BstC8I	GCNNGC	3 cut(s)	319, 390, 462
BstDEI	CTNAG	3 cut(s)	202, 344, 722
BstDSI	CCRYGG	2 cut(s)	446, 468
BstF5I	GGATG	7 cut(s)	106, 345, 456, 883, 997, 1049, 1119
BstFNI	CGCG	1 cut(s)	392
BstKTI	GATC	2 cut(s)	7, 1040
BstMAI	GTCTC	2 cut(s)	497, 1051
BstMBI	GATC	2 cut(s)	4, 1037
BstMWI	GCNNNNNNNGC	6 cut(s)	162, 274, 380, 389, 470, 1011
BstNI	CCWGG	1 cut(s)	845
BstNSI	RCATGY	1 cut(s)	794
BstSCI	CCNGG	2 cut(s)	843, 1111
BstSFI	CTRYAG	1 cut(s)	765
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	3 cut(s)	451, 475, 774
BstV2I	GAAGAC	2 cut(s)	156, 667
Bsu15I	ATCGAT	2 cut(s)	645, 861
BsuRI	GGCC	2 cut(s)	311, 1031
BsuTUI	ATCGAT	2 cut(s)	645, 861
BtgI	CCRYGG	2 cut(s)	446, 468
BtsCI	GGATG	7 cut(s)	106, 345, 456, 883, 997, 1049, 1119
BtsI	GCAGTG	2 cut(s)	774, 934
BtsIMutI	CAGTG	5 cut(s)	123, 774, 934, 985, 1032
Cac8I	GCNNGC	3 cut(s)	319, 390, 462
CaiI	CAGNNNCTG	1 cut(s)	844
Cfr13I	GGNCC	1 cut(s)	1029
ClaI	ATCGAT	2 cut(s)	645, 861
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	76
CspCI	CAANNNNNGTGG	2 cut(s)	910, 945
CviAII	CATG	3 cut(s)	748, 791, 969
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	3 cut(s)	202, 344, 722
DpnI	GATC	2 cut(s)	6, 1039
DpnII	GATC	2 cut(s)	4, 1037
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	2 cut(s)	129, 1070
EarI	CTCTTC	2 cut(s)	129, 1070
EciI	GGCGGA	2 cut(s)	361, 410
Ecl136II	GAGCTC	3 cut(s)	277, 317, 712
Eco130I	CCWWGG	1 cut(s)	492
Eco24I	GRGCYC	4 cut(s)	116, 279, 319, 714
Eco31I	GGTCTC	2 cut(s)	497, 1051
Eco32I	GATATC	1 cut(s)	1108
Eco53kI	GAGCTC	3 cut(s)	277, 317, 712
Eco57I	CTGAAG	1 cut(s)	416
EcoICRI	GAGCTC	3 cut(s)	277, 317, 712
EcoRI	GAATTC	2 cut(s)	849, 1081
EcoRII	CCWGG	1 cut(s)	843
EcoRV	GATATC	1 cut(s)	1108
EcoT14I	CCWWGG	1 cut(s)	492
EcoT38I	GRGCYC	4 cut(s)	116, 279, 319, 714
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	3 cut(s)	751, 794, 972
FaiI	YATR	7 cut(s)	552, 749, 782, 792, 806, 824, 970
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FaqI	GGGAC	1 cut(s)	960
FatI	CATG	3 cut(s)	747, 790, 968
FblI	GTMKAC	1 cut(s)	817
Fnu4HI	GCNGC	4 cut(s)	393, 465, 489, 788
FokI	GGATG	7 cut(s)	113, 352, 463, 890, 1004, 1036, 1106
FriOI	GRGCYC	4 cut(s)	116, 279, 319, 714
Fsp4HI	GCNGC	4 cut(s)	393, 465, 489, 788
FspBI	CTAG	4 cut(s)	26, 564, 741, 1129
GluI	GCNGC	4 cut(s)	393, 465, 489, 788
GsaI	CCCAGC	2 cut(s)	460, 691
HaeIII	GGCC	2 cut(s)	311, 1031
HapII	CCGG	4 cut(s)	312, 915, 1058, 1113
HgaI	GACGC	1 cut(s)	77
Hin1II	CATG	3 cut(s)	751, 794, 972
HincII	GTYRAC	1 cut(s)	799
HindII	GTYRAC	1 cut(s)	799
HinfI	GANTC	9 cut(s)	32, 260, 348, 619, 663, 724, 737, 858, 1022
HpaII	CCGG	4 cut(s)	312, 915, 1058, 1113
HphI	GGTGA	1 cut(s)	646
Hpy166II	GTNNAC	2 cut(s)	799, 818
Hpy188I	TCNGA	9 cut(s)	85, 265, 633, 672, 723, 736, 857, 901, 1009
Hpy188III	TCNNGA	1 cut(s)	915
Hpy8I	GTNNAC	2 cut(s)	799, 818
HpyAV	CCTTC	1 cut(s)	728
HpyCH4III	ACNGT	2 cut(s)	813, 1097
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	3 cut(s)	790, 972, 1103
HpyF10VI	GCNNNNNNNGC	6 cut(s)	162, 274, 380, 389, 470, 1011
HpyF3I	CTNAG	3 cut(s)	202, 344, 722
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	3 cut(s)	751, 794, 972
Kpn2I	TCCGGA	1 cut(s)	914
Kzo9I	GATC	2 cut(s)	4, 1037
LmnI	GCTCC	8 cut(s)	88, 199, 235, 265, 282, 314, 846, 1060
Lsp1109I	GCAGC	3 cut(s)	451, 475, 774
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	4 cut(s)	26, 564, 741, 1129
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	625
MalI	GATC	2 cut(s)	6, 1039
MboI	GATC	2 cut(s)	4, 1037
MhlI	GDGCHC	6 cut(s)	116, 279, 319, 390, 597, 714
MluCI	AATT	5 cut(s)	140, 729, 849, 902, 1081
MlyI	GAGTC	3 cut(s)	357, 657, 733
MmeI	TCCRAC	3 cut(s)	451, 966, 1110
MroI	TCCGGA	1 cut(s)	914
MseI	TTAA	3 cut(s)	159, 180, 905
MslI	CAYNNNNRTG	1 cut(s)	383
MspI	CCGG	4 cut(s)	312, 915, 1058, 1113
MspR9I	CCNGG	2 cut(s)	845, 1113
Mva1269I	GAATGC	1 cut(s)	887
MvaI	CCWGG	1 cut(s)	845
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	6 cut(s)	162, 274, 380, 389, 470, 1011
NciI	CCSGG	1 cut(s)	1113
NdeII	GATC	2 cut(s)	4, 1037
NlaIII	CATG	3 cut(s)	751, 794, 972
NlaIV	GGNNCC	1 cut(s)	1062
NmuCI	GTSAC	1 cut(s)	625
NspI	RCATGY	1 cut(s)	794
OliI	CACNNNNGTG	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	1 cut(s)	1022
PctI	GAATGC	1 cut(s)	887
PfeI	GAWTC	6 cut(s)	32, 260, 619, 737, 858, 1022
PflFI	GACNNNGTC	1 cut(s)	666
PflMI	CCANNNNNTGG	1 cut(s)	844
PkrI	GCNGC	4 cut(s)	394, 466, 490, 789
PleI	GAGTC	3 cut(s)	356, 657, 732
PpsI	GAGTC	3 cut(s)	356, 657, 732
Psp124BI	GAGCTC	3 cut(s)	279, 319, 714
Psp1406I	AACGTT	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	843
PspFI	CCCAGC	2 cut(s)	456, 687
PspGI	CCWGG	1 cut(s)	843
PspN4I	GGNNCC	1 cut(s)	1062
PspPI	GGNCC	1 cut(s)	1029
PsrI	GAACNNNNNNTAC	4 cut(s)	801, 833, 943, 975
PstNI	CAGNNNCTG	1 cut(s)	844
PsyI	GACNNNGTC	1 cut(s)	666
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	383
SacI	GAGCTC	3 cut(s)	279, 319, 714
SaqAI	TTAA	3 cut(s)	159, 180, 905
SatI	GCNGC	4 cut(s)	393, 465, 489, 788
Sau3AI	GATC	2 cut(s)	4, 1037
Sau96I	GGNCC	1 cut(s)	1029
SchI	GAGTC	3 cut(s)	357, 657, 733
ScrFI	CCNGG	2 cut(s)	845, 1113
SduI	GDGCHC	6 cut(s)	116, 279, 319, 390, 597, 714
SfaNI	GCATC	1 cut(s)	330
SfcI	CTRYAG	1 cut(s)	765
SmiMI	CAYNNNNRTG	1 cut(s)	383
SpeI	ACTAGT	1 cut(s)	25
Sse9I	AATT	5 cut(s)	140, 729, 849, 902, 1081
SsiI	CCGC	5 cut(s)	329, 372, 383, 392, 395
SspMI	CTAG	4 cut(s)	26, 564, 741, 1129
SstI	GAGCTC	3 cut(s)	279, 319, 714
StyD4I	CCNGG	2 cut(s)	843, 1111
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	2 cut(s)	813, 1097
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	8 cut(s)	7, 207, 405, 645, 861, 887, 1016, 1070
TaqII	GACCGA	2 cut(s)	656, 1033
TasI	AATT	5 cut(s)	140, 729, 849, 902, 1081
TatI	WGTACW	1 cut(s)	75
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	6 cut(s)	32, 260, 619, 737, 858, 1022
Tru1I	TTAA	3 cut(s)	159, 180, 905
Tru9I	TTAA	3 cut(s)	159, 180, 905
TscAI	CASTG	5 cut(s)	123, 781, 934, 985, 1039
TseFI	GTSAC	1 cut(s)	625
TseI	GCWGC	3 cut(s)	464, 488, 787
Tsp45I	GTSAC	1 cut(s)	625
TspDTI	ATGAA	6 cut(s)	627, 631, 632, 736, 894, 1108
TspRI	CASTG	5 cut(s)	123, 781, 934, 985, 1039
Tth111I	GACNNNGTC	1 cut(s)	666
Van91I	CCANNNNNTGG	1 cut(s)	844
XapI	RAATTY	2 cut(s)	849, 1081
XceI	RCATGY	1 cut(s)	794
XcmI	CCANNNNNNNNNTGG	1 cut(s)	985
XmiI	GTMKAC	1 cut(s)	817
XspI	CTAG	4 cut(s)	26, 564, 741, 1129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.