Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Reverse (-)

6878148 .. 6880202

Gene Structure 2055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG067400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCAATGAACCAAAATGAGCCACAAAATGAGCAAAACAGTTCATTCTTGCTGGATGATGCTTTGTTCTGTGGAGAAGAGAAATGGGAGGAGGAAGATGAAGTGAGTGAGGTGTACAATGGTGATGATGATGAAATAAACTACAATAATGACGACATTATTAATGGAAAAACCCAAAAAAACCCATCTCTGTTTCCTCTGTTTTTGTTGGAGCAAGATCTGTTTTGGGAGGATGAAGAGCTTCTTTCTCTCTTCTCCAAAGAACAGCAGCAGCCGGAAGCCCATCTGAACGACGCCGTATTGGTGGCGCGTCGCCGTGAGGCGGTGGAGTGGATGCTGAAAGTGAATGCCCATTATGGATTCACAGCTCTCACTGCAATCCTAGCCGTGAACTACTTCGACAGGTTCATCTCCAGCGTCCATTTCCAGAGAGACAAGCCATGGATGGTTCAGCTCGTCTCTGTTGCTTGCATCTCTCTGGCTGCCAAAGTGGAAGAGACCCAAGTCCCTCTTCTTCTAGACCTTCAAGTAGAGGACACCAAGTATGTTTTCGAGGCCAAAACGGTTCAAAGAATGGAGCTTTTGGTGCTCTCAACTCTTCAATGGAGGATGCACCCAGTGACTCCAATCTCTTTCCTTGACCACATCATAAGAAGGCTTGGATTGAAGACTAGTCTTCACTGGGAGTTTCTGAAGCTCTGTGAGAGTCTGCTTCTGTCTTTGGTGTTGGATTCAAGATGCATTGGTTATCTCCCTTCTGTTTTGGCCACTGCTACAATGATGAGGGTCATAGACCTTGTTGAGCCTTGTAAAGCTGTGGAATACCAAACCCAACTTCTGGGGGTCCTCAAAATAAGCAAGGAGATTGTGAATGACTGTTATACCCTCATCCTTGAGATGTCAAACTATGGCTACAAGAACAACCCCCTTAAACGCAAGCATGAGCAAATCCCAGGGAGCCCTAGTGGAGTGATTGATGCATACTTCAGTTCTGAAAGCTCAAATGACTCCTGGGCTGCGGGTTCATCGGTTTCTTCTTCGCCGGAGCCACAGTTCAAGAAGATCAAAGCAGAGGCTTCATCACTCAACAGGCTCTTGGGCATTGTTGGTAGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

372

Amino Acids

42.32

Weight (kDa)

4.76

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	101 - 204	1.2e-26	Cyclin, N-terminal domain
Cyclin_C	PF02984	207 - 313	2e-16	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	838
AccII	CGCG	1 cut(s)	310
AciI	CCGC	2 cut(s)	323, 1019
AcoI	YGGCCR	1 cut(s)	765
AcuI	CTGAAG	2 cut(s)	713, 970
AcyI	GRCGYC	1 cut(s)	294
AdeI	CACNNNGTG	1 cut(s)	619
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	322, 838
AgsI	TTSAA	6 cut(s)	527, 569, 602, 667, 735, 1057
AhlI	ACTAGT	1 cut(s)	671
AjnI	CCWGG	2 cut(s)	952, 1010
AjuI	GAANNNNNNNTTGG	6 cut(s)	495, 527, 533, 565, 819, 851
AloI	GAACNNNNNNTCC	2 cut(s)	1037, 1069
AluBI	AGCT	7 cut(s)	241, 368, 454, 580, 697, 815, 999
AluI	AGCT	7 cut(s)	241, 368, 454, 580, 697, 815, 999
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	3 cut(s)	426, 463, 491
AoxI	GGCC	2 cut(s)	555, 765
ApeKI	GCWGC	4 cut(s)	268, 271, 482, 1016
AseI	ATTAAT	1 cut(s)	162
Asp700I	GAANNNNTTC	2 cut(s)	240, 395
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	844
AsuHPI	GGTGA	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	844
BalI	TGGCCA	1 cut(s)	767
BanII	GRGCYC	1 cut(s)	962
BbsI	GAAGAC	2 cut(s)	668, 674
Bbv12I	GWGCWC	1 cut(s)	591
BbvI	GCAGC	4 cut(s)	280, 283, 469, 1003
BccI	CCATC	3 cut(s)	193, 291, 439
BceAI	ACGGC	3 cut(s)	281, 300, 371
BciT130I	CCWGG	2 cut(s)	954, 1012
BcoDI	GTCTC	3 cut(s)	426, 463, 491
BcuI	ACTAGT	1 cut(s)	671
BfaI	CTAG	4 cut(s)	383, 518, 672, 963
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	4 cut(s)	269, 272, 483, 1017
BlsI	GCNGC	4 cut(s)	270, 273, 484, 1018
Bme1390I	CCNGG	2 cut(s)	954, 1012
Bme18I	GGWCC	1 cut(s)	844
BmgT120I	GGNCC	1 cut(s)	844
BmiI	GGNNCC	3 cut(s)	845, 959, 1047
BmrFI	CCNGG	2 cut(s)	954, 1012
BmrI	ACTGGG	2 cut(s)	611, 691
BmsI	GCATC	6 cut(s)	49, 324, 480, 600, 728, 967
BmuI	ACTGGG	2 cut(s)	611, 691
BoxI	GACNNNNGTC	1 cut(s)	503
BpiI	GAAGAC	2 cut(s)	668, 674
BpmI	CTGGAG	1 cut(s)	397
BpuEI	CTTGAG	1 cut(s)	914
BsaHI	GRCGYC	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	4 cut(s)	440, 952, 953, 1011
BsaXI	ACNNNNNCTCC	4 cut(s)	949, 979, 1037, 1067
Bsc4I	CCNNNNNNNGG	2 cut(s)	322, 838
Bse1I	ACTGG	2 cut(s)	617, 686
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	954, 1012
BseDI	CCNNGG	4 cut(s)	440, 952, 953, 1011
BseGI	GGATG	6 cut(s)	61, 238, 339, 450, 615, 888
BseLI	CCNNNNNNNGG	2 cut(s)	322, 838
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	2 cut(s)	617, 686
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	4 cut(s)	280, 283, 469, 1003
Bsh1236I	CGCG	1 cut(s)	310
BshFI	GGCC	2 cut(s)	557, 767
BsiHKAI	GWGCWC	1 cut(s)	591
BsiSI	CCGG	2 cut(s)	275, 1043
BslFI	GGGAC	2 cut(s)	491, 1098
BslI	CCNNNNNNNGG	2 cut(s)	322, 838
BsmAI	GTCTC	3 cut(s)	426, 463, 491
BsmBI	CGTCTC	1 cut(s)	463
BsmFI	GGGAC	2 cut(s)	491, 1098
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	2 cut(s)	557, 767
Bso31I	GGTCTC	1 cut(s)	491
Bsp1286I	GDGCHC	2 cut(s)	591, 962
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	217, 1062
Bsp19I	CCATGG	1 cut(s)	440
BspACI	CCGC	2 cut(s)	323, 1019
BspANI	GGCC	2 cut(s)	557, 767
BspFNI	CGCG	1 cut(s)	310
BspLI	GGNNCC	3 cut(s)	845, 959, 1047
BspQI	GCTCTTC	1 cut(s)	231
BspTNI	GGTCTC	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	12
BsrGI	TGTACA	1 cut(s)	114
BsrI	ACTGG	2 cut(s)	617, 686
BssECI	CCNNGG	4 cut(s)	440, 952, 953, 1011
BssMI	GATC	2 cut(s)	217, 1062
BssNI	GRCGYC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	440
Bst2UI	CCWGG	2 cut(s)	954, 1012
Bst4CI	ACNGT	4 cut(s)	41, 565, 878, 1053
Bst6I	CTCTTC	6 cut(s)	72, 231, 257, 489, 516, 603
BstACI	GRCGYC	1 cut(s)	294
BstAUI	TGTACA	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	469, 938
BstDSI	CCRYGG	1 cut(s)	440
BstF5I	GGATG	6 cut(s)	61, 238, 339, 450, 615, 888
BstFNI	CGCG	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	2 cut(s)	220, 1065
BstMAI	GTCTC	3 cut(s)	426, 463, 491
BstMBI	GATC	2 cut(s)	217, 1062
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 383, 586
BstNI	CCWGG	2 cut(s)	954, 1012
BstPAI	GACNNNNGTC	1 cut(s)	503
BstSCI	CCNGG	2 cut(s)	952, 1010
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	4 cut(s)	280, 283, 469, 1003
BstV2I	GAAGAC	2 cut(s)	668, 674
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	557, 767
BtgI	CCRYGG	1 cut(s)	440
BtsCI	GGATG	6 cut(s)	61, 238, 339, 450, 615, 888
BtsI	GCAGTG	2 cut(s)	372, 768
BtsIMutI	CAGTG	4 cut(s)	372, 624, 679, 768
Cac8I	GCNNGC	2 cut(s)	469, 938
CfoI	GCGC	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	844
CseI	GACGC	3 cut(s)	299, 302, 406
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	2 cut(s)	441, 941
CviQI	GTAC	1 cut(s)	115
DpnI	GATC	2 cut(s)	219, 1064
DpnII	GATC	2 cut(s)	217, 1062
DraIII	CACNNNGTG	1 cut(s)	619
EaeI	YGGCCR	1 cut(s)	765
Eam1104I	CTCTTC	6 cut(s)	72, 231, 257, 489, 516, 603
EarI	CTCTTC	6 cut(s)	72, 231, 257, 489, 516, 603
Eco130I	CCWWGG	1 cut(s)	440
Eco24I	GRGCYC	1 cut(s)	962
Eco31I	GGTCTC	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	844
Eco57I	CTGAAG	2 cut(s)	713, 970
EcoO109I	RGGNCCY	1 cut(s)	844
EcoRII	CCWGG	2 cut(s)	952, 1010
EcoT14I	CCWWGG	1 cut(s)	440
EcoT22I	ATGCAT	2 cut(s)	743, 982
EcoT38I	GRGCYC	1 cut(s)	962
ErhI	CCWWGG	1 cut(s)	440
Esp3I	CGTCTC	1 cut(s)	463
FaeI	CATG	2 cut(s)	444, 944
FaiI	YATR	9 cut(s)	357, 442, 546, 650, 791, 882, 909, 942, 982
FalI	AAGNNNNNCTT	4 cut(s)	228, 260, 495, 527
FaqI	GGGAC	2 cut(s)	491, 1098
FatI	CATG	2 cut(s)	440, 940
FauI	CCCGC	1 cut(s)	1012
Fnu4HI	GCNGC	4 cut(s)	269, 272, 483, 1017
FokI	GGATG	6 cut(s)	68, 245, 346, 457, 622, 875
FriOI	GRGCYC	1 cut(s)	962
Fsp4HI	GCNGC	4 cut(s)	269, 272, 483, 1017
FspBI	CTAG	4 cut(s)	383, 518, 672, 963
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	4 cut(s)	269, 272, 483, 1017
GsuI	CTGGAG	1 cut(s)	397
HaeIII	GGCC	2 cut(s)	557, 767
HapII	CCGG	2 cut(s)	275, 1043
HgaI	GACGC	3 cut(s)	299, 302, 406
HhaI	GCGC	1 cut(s)	310
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	2 cut(s)	444, 944
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HinfI	GANTC	5 cut(s)	360, 622, 706, 731, 1007
HpaII	CCGG	2 cut(s)	275, 1043
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	2 cut(s)	115, 391
Hpy188I	TCNGA	3 cut(s)	288, 693, 994
Hpy188III	TCNNGA	4 cut(s)	427, 518, 735, 1057
Hpy8I	GTNNAC	2 cut(s)	115, 391
Hpy99I	CGWCG	2 cut(s)	296, 315
HpyAV	CCTTC	3 cut(s)	533, 648, 765
HpyCH4III	ACNGT	4 cut(s)	41, 565, 878, 1053
HpyCH4V	TGCA	5 cut(s)	377, 471, 613, 741, 980
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 383, 586
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	444, 944
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	2 cut(s)	217, 1062
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	4 cut(s)	211, 577, 957, 1045
Lsp1109I	GCAGC	4 cut(s)	280, 283, 469, 1003
LweI	GCATC	6 cut(s)	49, 324, 480, 600, 728, 967
MaeI	CTAG	4 cut(s)	383, 518, 672, 963
MaeIII	GTNAC	1 cut(s)	619
MalI	GATC	2 cut(s)	219, 1064
MboI	GATC	2 cut(s)	217, 1062
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	2 cut(s)	591, 962
MlsI	TGGCCA	1 cut(s)	767
MluNI	TGGCCA	1 cut(s)	767
MlyI	GAGTC	3 cut(s)	616, 715, 1001
MmeI	TCCRAC	2 cut(s)	189, 708
Mox20I	TGGCCA	1 cut(s)	767
Mph1103I	ATGCAT	2 cut(s)	743, 982
MroXI	GAANNNNTTC	2 cut(s)	240, 395
MscI	TGGCCA	1 cut(s)	767
MseI	TTAA	2 cut(s)	162, 930
Msp20I	TGGCCA	1 cut(s)	767
MspI	CCGG	2 cut(s)	275, 1043
MspR9I	CCNGG	2 cut(s)	954, 1012
Mva1269I	GAATGC	1 cut(s)	352
MvaI	CCWGG	2 cut(s)	954, 1012
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	3 cut(s)	374, 383, 586
NcoI	CCATGG	1 cut(s)	440
NdeII	GATC	2 cut(s)	217, 1062
NlaIII	CATG	2 cut(s)	444, 944
NlaIV	GGNNCC	3 cut(s)	845, 959, 1047
NmuCI	GTSAC	1 cut(s)	619
NsiI	ATGCAT	2 cut(s)	743, 982
PasI	CCCWGGG	1 cut(s)	953
PciSI	GCTCTTC	1 cut(s)	231
PctI	GAATGC	1 cut(s)	352
PdmI	GAANNNNTTC	2 cut(s)	240, 395
PfeI	GAWTC	2 cut(s)	360, 731
PflMI	CCANNNNNTGG	1 cut(s)	838
PkrI	GCNGC	4 cut(s)	270, 273, 484, 1018
PleI	GAGTC	3 cut(s)	616, 714, 1001
PpsI	GAGTC	3 cut(s)	616, 714, 1001
PpuMI	RGGWCCY	1 cut(s)	844
PshAI	GACNNNNGTC	1 cut(s)	503
PshBI	ATTAAT	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	844
Psp6I	CCWGG	2 cut(s)	952, 1010
PspGI	CCWGG	2 cut(s)	952, 1010
PspN4I	GGNNCC	3 cut(s)	845, 959, 1047
PspPI	GGNCC	1 cut(s)	844
PspPPI	RGGWCCY	1 cut(s)	844
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	162, 930
SatI	GCNGC	4 cut(s)	269, 272, 483, 1017
Sau3AI	GATC	2 cut(s)	217, 1062
Sau96I	GGNCC	1 cut(s)	844
SchI	GAGTC	3 cut(s)	616, 715, 1001
ScrFI	CCNGG	2 cut(s)	954, 1012
SduI	GDGCHC	2 cut(s)	591, 962
SfaNI	GCATC	6 cut(s)	49, 324, 480, 600, 728, 967
SinI	GGWCC	1 cut(s)	844
SmlI	CTYRAG	1 cut(s)	893
SmoI	CTYRAG	1 cut(s)	893
SpeI	ACTAGT	1 cut(s)	671
SsiI	CCGC	2 cut(s)	323, 1019
SspMI	CTAG	4 cut(s)	383, 518, 672, 963
StyD4I	CCNGG	2 cut(s)	952, 1010
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	4 cut(s)	41, 565, 878, 1053
TaqI	TCGA	2 cut(s)	399, 552
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	2 cut(s)	360, 731
Tru1I	TTAA	2 cut(s)	162, 930
Tru9I	TTAA	2 cut(s)	162, 930
TscAI	CASTG	4 cut(s)	379, 624, 686, 775
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	4 cut(s)	268, 271, 482, 1016
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	8 cut(s)	23, 33, 114, 147, 249, 397, 1014, 1068
TspRI	CASTG	4 cut(s)	379, 624, 686, 775
Van91I	CCANNNNNTGG	1 cut(s)	838
VpaK11BI	GGWCC	1 cut(s)	844
VspI	ATTAAT	1 cut(s)	162
XbaI	TCTAGA	1 cut(s)	517
XmnI	GAANNNNTTC	2 cut(s)	240, 395
XspI	CTAG	4 cut(s)	383, 518, 672, 963
Zsp2I	ATGCAT	2 cut(s)	743, 982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.