Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Reverse (-)

36900762 .. 36902991

Gene Structure 2230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G430500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGATCAACATCATCATCAGCAAGAAGTAGAATCAAGTGAAGAACAAAACCCAGTTTTCCTTTTGGATGCTCTGTATTGCTCAGAAGAGCATTTGGAGGAACAAGCGAGTGTAGTGGAGTATTTCCAAGAGGAAGATGAATTTGTAGGAGACAGTTGTTGTTACAGCAATATTTCATCGTATAAGCCAATAAAAGTTCCAATCTTGCTAGAGCAAGACTTGTTTTGGGACAACGAGGAGCTAATCTCACTGTTATCCAAAGAAGCAGAACAAAATGGTGAGCTTCAAAAACCTCTCCAAATCAGCTCATCTGTGTCTGGGGCTCGTAAAGAGGCAGTGGATTGGATGCTGAGAGTGATTACCCACTTCTCTTTCTCTGCTCTCACTGCCGTTCTTGCTGTGGATTACTTTGATAGGTTCTTCTTCAGCCTCCAGTTTCAGATTGAGAAGCCATGGACGACCCAGCTTGCTGCTGTGGCTTGTCTCTCTCTTGCTGCCAAAGTGGAGGAGACCCAAGTTCCCCTTTTACTGGACTTCCAAGTGGAAGACAGTAAGTATTTTTTTGAAGCTAGAACTATTAAGAGAATGGAAATTTTGGTGCTCTCCACACTTCAATGGAAGATGAACCCTGTCACTCCACTTTCATTTGTCGATTACATCACAAGGAGGCTTGGGCTAAAACACCATCTCTGTTGGGAATTTCTCAAGAGATGTGAGCTCATCCTTCTGAATCTCATTTCAGATTCTAGGTTCATGTCTTTCCTTCCATCTGTAGTGGCCACTGCTACAATGCTGCACGTTGTCAACAATATAGAACCCTGTTTACATGTCGAATATCAAAACCAGCTCTTAGGCATTCTCGGAATTGACAAGGACAAAGTGGATGATTGCTATAGGCTTGTCCTGGAATTGTCATCATCAGGAGGCCATGGCAAACCATCCAACAAGCGCAAGTTTGGTTCAATTCCTGGCAGTCCAAATGGAGTTATAGACATGTCATTTAGCTCTGATAGTTCAAATGATTCGTGGGCCGTGGCCGCATCAGTCTCATCTTCACCAGAGCCTCTGTCAAAGAAGCGGAAGCTCAGCCACAACCCAAATGCAGAGATTCTCAGCTTCATCCCTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

377

Amino Acids

42.71

Weight (kDa)

5.0

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	1038, 1078
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	777, 1035
AcsI	RAATTY	3 cut(s)	140, 591, 698
AcuI	CTGAAG	1 cut(s)	409
AfiI	CCNNNNNNNGG	1 cut(s)	529
AflIII	ACRYGT	2 cut(s)	826, 993
AgsI	TTSAA	5 cut(s)	287, 566, 614, 963, 1017
AjnI	CCWGG	2 cut(s)	903, 967
Alw21I	GWGCWC	2 cut(s)	603, 720
Alw26I	GTCTC	4 cut(s)	144, 488, 503, 1051
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	4 cut(s)	777, 925, 1029, 1035
ApeKI	GCWGC	3 cut(s)	470, 494, 793
ApoI	RAATTY	3 cut(s)	140, 591, 698
AspLEI	GCGC	1 cut(s)	951
AspS9I	GGNCC	1 cut(s)	1029
AsuHPI	GGTGA	2 cut(s)	290, 1047
BalI	TGGCCA	1 cut(s)	779
BanII	GRGCYC	2 cut(s)	325, 720
BbsI	GAAGAC	1 cut(s)	552
Bbv12I	GWGCWC	2 cut(s)	603, 720
BbvI	GCAGC	3 cut(s)	457, 481, 780
BccI	CCATC	3 cut(s)	693, 775, 946
BceAI	ACGGC	2 cut(s)	374, 1016
BciT130I	CCWGG	2 cut(s)	905, 969
BcoDI	GTCTC	4 cut(s)	144, 488, 503, 1051
BfaI	CTAG	4 cut(s)	209, 570, 747, 1129
BfmI	CTRYAG	2 cut(s)	771, 892
BisI	GCNGC	4 cut(s)	471, 495, 794, 1038
BlpI	GCTNAGC	1 cut(s)	1085
BlsI	GCNGC	4 cut(s)	472, 496, 795, 1039
Bme1390I	CCNGG	2 cut(s)	905, 969
BmgT120I	GGNCC	1 cut(s)	1029
BmrFI	CCNGG	2 cut(s)	905, 969
BmrI	ACTGGG	1 cut(s)	47
BmsI	GCATC	3 cut(s)	58, 336, 1049
BmuI	ACTGGG	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	552
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
BpmI	CTGGAG	1 cut(s)	416
Bpu1102I	GCTNAGC	1 cut(s)	1085
BpuEI	CTTGAG	1 cut(s)	689
BsaBI	GATNNNNATC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	503
BsaJI	CCNNGG	3 cut(s)	452, 928, 1032
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse1I	ACTGG	3 cut(s)	53, 433, 534
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	2 cut(s)	905, 969
BseDI	CCNNGG	3 cut(s)	452, 928, 1032
BseGI	GGATG	6 cut(s)	73, 351, 720, 889, 938, 1119
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMII	CTCAG	4 cut(s)	96, 341, 1099, 1126
BseNI	ACTGG	3 cut(s)	53, 433, 534
BseRI	GAGGAG	2 cut(s)	251, 521
BseXI	GCAGC	3 cut(s)	457, 481, 780
BseYI	CCCAGC	1 cut(s)	462
BsgI	GTGCAG	1 cut(s)	779
BshFI	GGCC	4 cut(s)	779, 927, 1031, 1037
BsiHKAI	GWGCWC	2 cut(s)	603, 720
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmAI	GTCTC	4 cut(s)	144, 488, 503, 1051
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	855
BsnI	GGCC	4 cut(s)	779, 927, 1031, 1037
Bso31I	GGTCTC	1 cut(s)	503
Bsp1286I	GDGCHC	3 cut(s)	325, 603, 720
Bsp143I	GATC	1 cut(s)	4
Bsp1720I	GCTNAGC	1 cut(s)	1085
Bsp19I	CCATGG	2 cut(s)	452, 928
BspACI	CCGC	2 cut(s)	1038, 1078
BspANI	GGCC	4 cut(s)	779, 927, 1031, 1037
BspCNI	CTCAG	4 cut(s)	95, 342, 1098, 1125
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	503
BsrI	ACTGG	3 cut(s)	53, 433, 534
BssECI	CCNNGG	3 cut(s)	452, 928, 1032
BssMI	GATC	1 cut(s)	4
BssT1I	CCWWGG	2 cut(s)	452, 928
Bst2UI	CCWGG	2 cut(s)	905, 969
Bst4CI	ACNGT	3 cut(s)	155, 252, 551
Bst6I	CTCTTC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	5 cut(s)	82, 350, 850, 1085, 1112
BstDSI	CCRYGG	3 cut(s)	452, 928, 1032
BstF5I	GGATG	6 cut(s)	73, 351, 720, 889, 938, 1119
BstHHI	GCGC	1 cut(s)	951
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	4 cut(s)	144, 488, 503, 1051
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	4 cut(s)	386, 395, 476, 1037
BstNI	CCWGG	2 cut(s)	905, 969
BstNSI	RCATGY	2 cut(s)	830, 997
BstSCI	CCNGG	2 cut(s)	903, 967
BstSFI	CTRYAG	2 cut(s)	771, 892
BstV1I	GCAGC	3 cut(s)	457, 481, 780
BstV2I	GAAGAC	1 cut(s)	552
BsuRI	GGCC	4 cut(s)	779, 927, 1031, 1037
BtgI	CCRYGG	3 cut(s)	452, 928, 1032
BtsCI	GGATG	6 cut(s)	73, 351, 720, 889, 938, 1119
BtsI	GCAGTG	3 cut(s)	342, 384, 780
BtsIMutI	CAGTG	4 cut(s)	248, 342, 384, 780
Cac8I	GCNNGC	1 cut(s)	468
CfoI	GCGC	1 cut(s)	951
Cfr13I	GGNCC	1 cut(s)	1029
CviAII	CATG	5 cut(s)	453, 754, 827, 929, 994
DdeI	CTNAG	5 cut(s)	82, 350, 850, 1085, 1112
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
EaeI	YGGCCR	2 cut(s)	777, 1035
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	718
Eco130I	CCWWGG	2 cut(s)	452, 928
Eco24I	GRGCYC	2 cut(s)	325, 720
Eco31I	GGTCTC	1 cut(s)	503
Eco53kI	GAGCTC	1 cut(s)	718
Eco57I	CTGAAG	1 cut(s)	409
EcoICRI	GAGCTC	1 cut(s)	718
EcoRII	CCWGG	2 cut(s)	903, 967
EcoT14I	CCWWGG	2 cut(s)	452, 928
EcoT38I	GRGCYC	2 cut(s)	325, 720
ErhI	CCWWGG	2 cut(s)	452, 928
FaeI	CATG	5 cut(s)	456, 757, 830, 932, 997
FaiI	YATR	9 cut(s)	183, 454, 755, 812, 828, 894, 930, 989, 995
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	5 cut(s)	452, 753, 826, 928, 993
Fnu4HI	GCNGC	4 cut(s)	471, 495, 794, 1038
FokI	GGATG	6 cut(s)	80, 358, 707, 896, 925, 1106
FriOI	GRGCYC	2 cut(s)	325, 720
Fsp4HI	GCNGC	4 cut(s)	471, 495, 794, 1038
FspBI	CTAG	4 cut(s)	209, 570, 747, 1129
GlaI	GCGC	1 cut(s)	950
GluI	GCNGC	4 cut(s)	471, 495, 794, 1038
GsaI	CCCAGC	1 cut(s)	466
GsuI	CTGGAG	1 cut(s)	416
HaeIII	GGCC	4 cut(s)	779, 927, 1031, 1037
HhaI	GCGC	1 cut(s)	951
Hin1II	CATG	5 cut(s)	456, 757, 830, 932, 997
Hin6I	GCGC	1 cut(s)	949
HinP1I	GCGC	1 cut(s)	949
HincII	GTYRAC	1 cut(s)	805
HindII	GTYRAC	1 cut(s)	805
HinfI	GANTC	5 cut(s)	32, 730, 743, 1022, 1108
HphI	GGTGA	2 cut(s)	290, 1047
Hpy166II	GTNNAC	2 cut(s)	805, 824
Hpy188I	TCNGA	6 cut(s)	85, 441, 729, 742, 863, 1009
Hpy188III	TCNNGA	2 cut(s)	706, 921
Hpy8I	GTNNAC	2 cut(s)	805, 824
HpyAV	CCTTC	2 cut(s)	734, 773
HpyCH4III	ACNGT	3 cut(s)	155, 252, 551
HpyCH4IV	ACGT	1 cut(s)	798
HpyCH4V	TGCA	2 cut(s)	796, 1103
HpyF10VI	GCNNNNNNNGC	4 cut(s)	386, 395, 476, 1037
HpyF3I	CTNAG	5 cut(s)	82, 350, 850, 1085, 1112
HpySE526I	ACGT	1 cut(s)	798
Hsp92II	CATG	5 cut(s)	456, 757, 830, 932, 997
HspAI	GCGC	1 cut(s)	949
Kzo9I	GATC	1 cut(s)	4
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	238
Lsp1109I	GCAGC	3 cut(s)	457, 481, 780
LweI	GCATC	3 cut(s)	58, 336, 1049
MaeI	CTAG	4 cut(s)	209, 570, 747, 1129
MaeII	ACGT	1 cut(s)	798
MaeIII	GTNAC	2 cut(s)	161, 631
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	8 cut(s)	53, 98, 146, 412, 415, 557, 631, 1044
MhlI	GDGCHC	3 cut(s)	325, 603, 720
MlsI	TGGCCA	1 cut(s)	779
MluCI	AATT	6 cut(s)	140, 591, 698, 864, 908, 963
MluNI	TGGCCA	1 cut(s)	779
MmeI	TCCRAC	1 cut(s)	966
Mox20I	TGGCCA	1 cut(s)	779
MscI	TGGCCA	1 cut(s)	779
MseI	TTAA	1 cut(s)	579
MslI	CAYNNNNRTG	1 cut(s)	613
Msp20I	TGGCCA	1 cut(s)	779
MspR9I	CCNGG	2 cut(s)	905, 969
Mva1269I	GAATGC	1 cut(s)	855
MvaI	CCWGG	2 cut(s)	905, 969
MwoI	GCNNNNNNNGC	4 cut(s)	386, 395, 476, 1037
NcoI	CCATGG	2 cut(s)	452, 928
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	5 cut(s)	456, 757, 830, 932, 997
NmuCI	GTSAC	1 cut(s)	631
NspI	RCATGY	2 cut(s)	830, 997
PciI	ACATGT	2 cut(s)	826, 993
PciSI	GCTCTTC	1 cut(s)	81
PctI	GAATGC	1 cut(s)	855
PfeI	GAWTC	5 cut(s)	32, 730, 743, 1022, 1108
PfoI	TCCNGGA	1 cut(s)	903
PkrI	GCNGC	4 cut(s)	472, 496, 795, 1039
PscI	ACATGT	2 cut(s)	826, 993
Psp124BI	GAGCTC	1 cut(s)	720
Psp6I	CCWGG	2 cut(s)	903, 967
PspFI	CCCAGC	1 cut(s)	462
PspGI	CCWGG	2 cut(s)	903, 967
PspPI	GGNCC	1 cut(s)	1029
PsrI	GAACNNNNNNTAC	2 cut(s)	807, 839
RseI	CAYNNNNRTG	1 cut(s)	613
SacI	GAGCTC	1 cut(s)	720
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	4 cut(s)	471, 495, 794, 1038
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	1 cut(s)	1029
ScrFI	CCNGG	2 cut(s)	905, 969
SduI	GDGCHC	3 cut(s)	325, 603, 720
SfaNI	GCATC	3 cut(s)	58, 336, 1049
SfcI	CTRYAG	2 cut(s)	771, 892
SmiMI	CAYNNNNRTG	1 cut(s)	613
SmlI	CTYRAG	1 cut(s)	704
SmoI	CTYRAG	1 cut(s)	704
Sse9I	AATT	6 cut(s)	140, 591, 698, 864, 908, 963
SsiI	CCGC	2 cut(s)	1038, 1078
SspI	AATATT	1 cut(s)	172
SspMI	CTAG	4 cut(s)	209, 570, 747, 1129
SstI	GAGCTC	1 cut(s)	720
StyD4I	CCNGG	2 cut(s)	903, 967
StyI	CCWWGG	2 cut(s)	452, 928
TaaI	ACNGT	3 cut(s)	155, 252, 551
TaiI	ACGT	1 cut(s)	801
TaqI	TCGA	2 cut(s)	651, 831
TasI	AATT	6 cut(s)	140, 591, 698, 864, 908, 963
TauI	GCSGC	1 cut(s)	1040
TfiI	GAWTC	5 cut(s)	32, 730, 743, 1022, 1108
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	4 cut(s)	255, 342, 391, 787
TseFI	GTSAC	1 cut(s)	631
TseI	GCWGC	3 cut(s)	470, 494, 793
Tsp45I	GTSAC	1 cut(s)	631
TspDTI	ATGAA	6 cut(s)	153, 165, 633, 638, 742, 1108
TspRI	CASTG	4 cut(s)	255, 342, 391, 787
XapI	RAATTY	3 cut(s)	140, 591, 698
XceI	RCATGY	2 cut(s)	830, 997
XspI	CTAG	4 cut(s)	209, 570, 747, 1129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.