Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Reverse (-)

66847848 .. 66850414

Gene Structure 2567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27767

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGATCCGCCATTTCTCTTGGACGCTCTGTTCTGCTCGGAACAACGTTTGGATGAGGAAGAGCAAGAAGCTACGGTGTTGGACTATTCAGAGGAATTTGTTGAAGATAGTTCTTTTTATAGCAACAACTCTTCGTCTTGTAAACAACAACAACAACCAATAAAGTCCCCAATCTTGCTAGAGCAAGACCTGTTCTGGGACGATGAGGAACTCACCTCTCTGTTGTCGAAAGAGAAACTGAATCAAGATCGGAAAATCCTGAATCCCAACTCGTCTTTGGCCGGGGCACGTAAGGAGGCTGTGGATTGGATGCTGAGGGTCAATGCCCACTACTCTTTCTCTGCTCTCACTGCGGTTCTGGCCGTCGATTACCTCGATAGGTTTTTCTTCAGCTTCCAATTTCAGACCGAGAAGCCATGGATGACACAGCTCGCTGCCGTGGCTTGTATCTCCCTTGCTGCAAAAGTGGAGGAGACCCAAGTCCCCTTATTACTAGACTTCCAAGTTGAGGACAGCAAGTATGTGTTCGAAGCTAAAACGATTAACAGAATGGAGATTTTGGTTCTCTCAACTCTTGATTGGAAGATGAATCCGGTGACCCCAATTTCGTTTCTTGATTACATGACAAGGAGGTTTGGTTTGAAAGACCATCTCTGCTGGGAATTCCTCAAGAGATGTGAGCTCATCATTGTCAATCTCATCTCAGATTCTAGGTTCTTGTCTTTCCTTCCATCTGTAGTGGCTACTGCCACAATGCTGCACGTTGTCAATAACATTGAGCCTTGTCTTCAAGTTGAGTATGAAAACCAGCTCTTGACTATTCTCGGAATCGACAAGGGTTTGGCGGATGATTGCTCTAAGCTCATAATGGAACTGTCATCATCGTGGTCGAGAAACAAGCGCAAGTTTGGTTACTCAATTCCTGGGAGCCCAAATGGAGTCATTGACATATCATTCAGCTCGGACAGCTCAAATGACTCATGGGCCGTGGCCTCATCAGTCTCGTCCTCACCGGAACCTCTGTCCAAGAAAAGCAGGGCTCTGGAAAAGCAGCTTCTGGAGAAGCTCAACCAAACAGCAAATGCAGCAGCTGATATTCTCAGCCTTCCACGCCTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

373

Amino Acids

42.28

Weight (kDa)

4.68

Isoelectric Point (pI)

52.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	91 - 197	1.5e-25	Cyclin, N-terminal domain
Cyclin_C	PF02984	199 - 300	4.9e-13	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	8, 353, 845
AclI	AACGTT	1 cut(s)	46
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	279, 360
AcsI	RAATTY	2 cut(s)	95, 662
AcuI	CTGAAG	1 cut(s)	373
AfiI	CCNNNNNNNGG	2 cut(s)	196, 508
AgsI	TTSAA	3 cut(s)	104, 643, 791
AjnI	CCWGG	1 cut(s)	922
AloI	GAACNNNNNNTCC	2 cut(s)	14, 46
Alw21I	GWGCWC	1 cut(s)	684
Alw26I	GTCTC	2 cut(s)	467, 1006
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	2 cut(s)	1057, 1091
AoxI	GGCC	4 cut(s)	279, 360, 984, 990
ApeKI	GCWGC	6 cut(s)	434, 458, 757, 1051, 1085, 1088
ApoI	RAATTY	2 cut(s)	95, 662
ArsI	GACNNNNNNTTYG	2 cut(s)	589, 621
AspLEI	GCGC	1 cut(s)	903
AspS9I	GGNCC	1 cut(s)	984
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	3 cut(s)	205, 607, 1002
AsuII	TTCGAA	1 cut(s)	528
BaeGI	GKGCMC	1 cut(s)	289
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	3 cut(s)	684, 932, 1042
BbsI	GAAGAC	1 cut(s)	779
Bbv12I	GWGCWC	1 cut(s)	684
BbvCI	CCTCAGC	1 cut(s)	314
BbvI	GCAGC	6 cut(s)	421, 445, 744, 1063, 1097, 1100
BccI	CCATC	2 cut(s)	657, 739
BceAI	ACGGC	3 cut(s)	347, 422, 971
BciT130I	CCWGG	1 cut(s)	924
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	2 cut(s)	467, 1006
BfaI	CTAG	3 cut(s)	179, 494, 711
BfmI	CTRYAG	1 cut(s)	735
BisI	GCNGC	6 cut(s)	435, 459, 758, 1052, 1086, 1089
BlsI	GCNGC	6 cut(s)	436, 460, 759, 1053, 1087, 1090
Bme1390I	CCNGG	2 cut(s)	283, 924
BmgT120I	GGNCC	1 cut(s)	984
BmiI	GGNNCC	3 cut(s)	6, 929, 1017
BmrFI	CCNGG	2 cut(s)	283, 924
BmsI	GCATC	1 cut(s)	300
BoxI	GACNNNNGTC	1 cut(s)	479
BpiI	GAAGAC	1 cut(s)	779
BpmI	CTGGAG	1 cut(s)	1079
Bpu10I	CCTNAGC	1 cut(s)	314
Bpu14I	TTCGAA	1 cut(s)	528
BpuEI	CTTGAG	1 cut(s)	653
BpuMI	CCSGG	1 cut(s)	283
BsaAI	YACGTR	1 cut(s)	290
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	5 cut(s)	282, 416, 438, 923, 987
BsaWI	WCCGGW	2 cut(s)	592, 1012
BsaXI	ACNNNNNCTCC	2 cut(s)	622, 652
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 508
BseBI	CCWGG	1 cut(s)	924
BseDI	CCNNGG	5 cut(s)	282, 416, 438, 923, 987
BseGI	GGATG	4 cut(s)	58, 315, 426, 853
BseLI	CCNNNNNNNGG	2 cut(s)	196, 508
BseMII	CTCAG	3 cut(s)	305, 717, 1114
BseRI	GAGGAG	1 cut(s)	485
BseSI	GKGCMC	1 cut(s)	289
BseXI	GCAGC	6 cut(s)	421, 445, 744, 1063, 1097, 1100
BseYI	CCCAGC	1 cut(s)	657
BsgI	GTGCAG	1 cut(s)	743
BshFI	GGCC	4 cut(s)	281, 362, 986, 992
BsiHKAI	GWGCWC	1 cut(s)	684
BsiSI	CCGG	3 cut(s)	282, 593, 1013
BslFI	GGGAC	3 cut(s)	151, 212, 467
BslI	CCNNNNNNNGG	2 cut(s)	196, 508
BsmAI	GTCTC	2 cut(s)	467, 1006
BsmFI	GGGAC	3 cut(s)	151, 212, 467
BsnI	GGCC	4 cut(s)	281, 362, 986, 992
Bso31I	GGTCTC	1 cut(s)	467
Bsp119I	TTCGAA	1 cut(s)	528
Bsp1286I	GDGCHC	4 cut(s)	289, 684, 932, 1042
Bsp143I	GATC	2 cut(s)	4, 247
Bsp19I	CCATGG	1 cut(s)	416
BspACI	CCGC	3 cut(s)	8, 353, 845
BspANI	GGCC	4 cut(s)	281, 362, 986, 992
BspCNI	CTCAG	3 cut(s)	306, 716, 1113
BspLI	GGNNCC	3 cut(s)	6, 929, 1017
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	54
BspT104I	TTCGAA	1 cut(s)	528
BspTNI	GGTCTC	1 cut(s)	467
BssECI	CCNNGG	5 cut(s)	282, 416, 438, 923, 987
BssMI	GATC	2 cut(s)	4, 247
BssT1I	CCWWGG	1 cut(s)	416
Bst2UI	CCWGG	1 cut(s)	924
Bst4CI	ACNGT	2 cut(s)	76, 876
Bst6I	CTCTTC	2 cut(s)	54, 136
BstBAI	YACGTR	1 cut(s)	290
BstBI	TTCGAA	1 cut(s)	528
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	4 cut(s)	314, 703, 858, 1100
BstDSI	CCRYGG	3 cut(s)	416, 438, 987
BstEII	GGTNACC	1 cut(s)	595
BstF5I	GGATG	4 cut(s)	58, 315, 426, 853
BstHHI	GCGC	1 cut(s)	903
BstKTI	GATC	2 cut(s)	7, 250
BstMAI	GTCTC	2 cut(s)	467, 1006
BstMBI	GATC	2 cut(s)	4, 247
BstMWI	GCNNNNNNNGC	6 cut(s)	350, 359, 440, 966, 1085, 1110
BstNI	CCWGG	1 cut(s)	924
BstPAI	GACNNNNGTC	1 cut(s)	479
BstPI	GGTNACC	1 cut(s)	595
BstSCI	CCNGG	2 cut(s)	281, 922
BstSFI	CTRYAG	1 cut(s)	735
BstSLI	GKGCMC	1 cut(s)	289
BstV1I	GCAGC	6 cut(s)	421, 445, 744, 1063, 1097, 1100
BstV2I	GAAGAC	1 cut(s)	779
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	4 cut(s)	281, 362, 986, 992
BtgI	CCRYGG	3 cut(s)	416, 438, 987
BtsCI	GGATG	4 cut(s)	58, 315, 426, 853
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	432
CaiI	CAGNNNCTG	2 cut(s)	1057, 1091
CfoI	GCGC	1 cut(s)	903
Cfr13I	GGNCC	1 cut(s)	984
CseI	GACGC	1 cut(s)	32
CviAII	CATG	3 cut(s)	417, 622, 981
DdeI	CTNAG	4 cut(s)	314, 703, 858, 1100
DpnI	GATC	2 cut(s)	6, 249
DpnII	GATC	2 cut(s)	4, 247
EaeI	YGGCCR	2 cut(s)	279, 360
Eam1104I	CTCTTC	2 cut(s)	54, 136
EarI	CTCTTC	2 cut(s)	54, 136
EciI	GGCGGA	1 cut(s)	860
Ecl136II	GAGCTC	1 cut(s)	682
Eco130I	CCWWGG	1 cut(s)	416
Eco24I	GRGCYC	3 cut(s)	684, 932, 1042
Eco31I	GGTCTC	1 cut(s)	467
Eco53kI	GAGCTC	1 cut(s)	682
Eco57I	CTGAAG	1 cut(s)	373
Eco91I	GGTNACC	1 cut(s)	595
EcoICRI	GAGCTC	1 cut(s)	682
EcoO65I	GGTNACC	1 cut(s)	595
EcoRI	GAATTC	1 cut(s)	662
EcoRII	CCWGG	1 cut(s)	922
EcoT14I	CCWWGG	1 cut(s)	416
EcoT38I	GRGCYC	3 cut(s)	684, 932, 1042
ErhI	CCWWGG	1 cut(s)	416
FaeI	CATG	3 cut(s)	420, 625, 984
FaiI	YATR	8 cut(s)	120, 418, 522, 623, 801, 866, 950, 982
FaqI	GGGAC	3 cut(s)	151, 212, 467
FatI	CATG	3 cut(s)	416, 621, 980
Fnu4HI	GCNGC	6 cut(s)	435, 459, 758, 1052, 1086, 1089
FokI	GGATG	4 cut(s)	65, 322, 433, 860
FriOI	GRGCYC	3 cut(s)	684, 932, 1042
Fsp4HI	GCNGC	6 cut(s)	435, 459, 758, 1052, 1086, 1089
FspBI	CTAG	3 cut(s)	179, 494, 711
GlaI	GCGC	1 cut(s)	902
GluI	GCNGC	6 cut(s)	435, 459, 758, 1052, 1086, 1089
GsaI	CCCAGC	1 cut(s)	661
GsuI	CTGGAG	1 cut(s)	1079
HaeIII	GGCC	4 cut(s)	281, 362, 986, 992
HapII	CCGG	3 cut(s)	282, 593, 1013
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	903
Hin1II	CATG	3 cut(s)	420, 625, 984
Hin6I	GCGC	1 cut(s)	901
HinP1I	GCGC	1 cut(s)	901
HinfI	GANTC	7 cut(s)	241, 262, 589, 707, 828, 939, 977
HpaII	CCGG	3 cut(s)	282, 593, 1013
HphI	GGTGA	3 cut(s)	205, 607, 1002
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	7 cut(s)	40, 91, 252, 405, 706, 827, 964
Hpy188III	TCNNGA	9 cut(s)	245, 259, 575, 614, 670, 814, 891, 1043, 1058
Hpy8I	GTNNAC	1 cut(s)	143
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	2 cut(s)	737, 1115
HpyCH4III	ACNGT	2 cut(s)	76, 876
HpyCH4IV	ACGT	3 cut(s)	46, 289, 762
HpyCH4V	TGCA	3 cut(s)	461, 760, 1085
HpyF10VI	GCNNNNNNNGC	6 cut(s)	350, 359, 440, 966, 1085, 1110
HpyF3I	CTNAG	4 cut(s)	314, 703, 858, 1100
HpySE526I	ACGT	3 cut(s)	46, 289, 762
Hsp92II	CATG	3 cut(s)	420, 625, 984
HspAI	GCGC	1 cut(s)	901
Kzo9I	GATC	2 cut(s)	4, 247
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	927
Lsp1109I	GCAGC	6 cut(s)	421, 445, 744, 1063, 1097, 1100
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	3 cut(s)	179, 494, 711
MaeII	ACGT	3 cut(s)	46, 289, 762
MaeIII	GTNAC	2 cut(s)	595, 911
MalI	GATC	2 cut(s)	6, 249
MboI	GATC	2 cut(s)	4, 247
MboII	GAAGA	6 cut(s)	71, 116, 123, 379, 595, 779
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	4 cut(s)	289, 684, 932, 1042
MluCI	AATT	5 cut(s)	95, 398, 603, 662, 918
MlyI	GAGTC	2 cut(s)	948, 971
MmeI	TCCRAC	1 cut(s)	60
MseI	TTAA	1 cut(s)	543
MslI	CAYNNNNRTG	1 cut(s)	883
MspA1I	CMGCKG	1 cut(s)	1091
MspI	CCGG	3 cut(s)	282, 593, 1013
MspR9I	CCNGG	2 cut(s)	283, 924
MvaI	CCWGG	1 cut(s)	924
MwoI	GCNNNNNNNGC	6 cut(s)	350, 359, 440, 966, 1085, 1110
NciI	CCSGG	1 cut(s)	283
NcoI	CCATGG	1 cut(s)	416
NdeII	GATC	2 cut(s)	4, 247
NlaIII	CATG	3 cut(s)	420, 625, 984
NlaIV	GGNNCC	3 cut(s)	6, 929, 1017
NmuCI	GTSAC	1 cut(s)	595
NspV	TTCGAA	1 cut(s)	528
PciSI	GCTCTTC	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PfeI	GAWTC	5 cut(s)	241, 262, 589, 707, 828
PkrI	GCNGC	6 cut(s)	436, 460, 759, 1053, 1087, 1090
PleI	GAGTC	2 cut(s)	947, 971
PpsI	GAGTC	2 cut(s)	947, 971
Ppu21I	YACGTR	1 cut(s)	290
PshAI	GACNNNNGTC	1 cut(s)	479
Psp124BI	GAGCTC	1 cut(s)	684
Psp1406I	AACGTT	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	922
PspEI	GGTNACC	1 cut(s)	595
PspFI	CCCAGC	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	922
PspN4I	GGNNCC	3 cut(s)	6, 929, 1017
PspPI	GGNCC	1 cut(s)	984
PstNI	CAGNNNCTG	2 cut(s)	1057, 1091
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	1091
RseI	CAYNNNNRTG	1 cut(s)	883
SacI	GAGCTC	1 cut(s)	684
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	6 cut(s)	435, 459, 758, 1052, 1086, 1089
Sau3AI	GATC	2 cut(s)	4, 247
Sau96I	GGNCC	1 cut(s)	984
SchI	GAGTC	2 cut(s)	948, 971
ScrFI	CCNGG	2 cut(s)	283, 924
SduI	GDGCHC	4 cut(s)	289, 684, 932, 1042
SfaNI	GCATC	1 cut(s)	300
SfcI	CTRYAG	1 cut(s)	735
SfuI	TTCGAA	1 cut(s)	528
SmiMI	CAYNNNNRTG	1 cut(s)	883
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	5 cut(s)	95, 398, 603, 662, 918
SsiI	CCGC	3 cut(s)	8, 353, 845
SspMI	CTAG	3 cut(s)	179, 494, 711
SstI	GAGCTC	1 cut(s)	684
StyD4I	CCNGG	2 cut(s)	281, 922
StyI	CCWWGG	1 cut(s)	416
TaaI	ACNGT	2 cut(s)	76, 876
TaiI	ACGT	3 cut(s)	49, 292, 765
TaqI	TCGA	6 cut(s)	227, 366, 375, 528, 831, 890
TaqII	GACCGA	1 cut(s)	422
TasI	AATT	5 cut(s)	95, 398, 603, 662, 918
TfiI	GAWTC	5 cut(s)	241, 262, 589, 707, 828
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	1 cut(s)	355
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	6 cut(s)	434, 458, 757, 1051, 1085, 1088
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	2 cut(s)	602, 816
TspRI	CASTG	1 cut(s)	355
XapI	RAATTY	2 cut(s)	95, 662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XspI	CTAG	3 cut(s)	179, 494, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.