Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Reverse (-)

56308346 .. 56309237

Gene Structure 892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030143

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGATGACACAACTCAATGTTGTGGCTTATCTCGCTCTCTCGCTGCAAAAGTGGAGGAGACCCAAGTGGAGAACAATAAGTATGTGTTTGAAGCAAAAACGATCGAAACAATGGAGATTTTGGTTCTCTCAACTCTTGACTGGAAGAAGAATCCGGTGGCGTACCCAATTTATTTTCTTGATTACTTGACAAGGAGGTATGGTTTGAAAGATCATCTCTGTTGGGAACTCCTTAAGAGATCTGAGCTCATCCTTGTGAGCTTGTCAATCTCATCTCATATTCTAGGTTCTTATCTCCTCCTTGTCAATAACATTAAGCCACGTCTGCAAGTTGAGTATGAAAACCAGCTCTTGGATATTCTCGGAATCGACAAGCTCATCTTGGAATTGTCATCATCATGGTCAAGAAACAAGCGCAAGTTTGGTCTTCAATTTCTGGGAACCTATATGGAGTCACCAGTCACCGGAATAGTTGGAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

161

Amino Acids

18.35

Weight (kDa)

6.13

Isoelectric Point (pI)

54.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	352
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	352, 464
AflII	CTTAAG	1 cut(s)	233
AgsI	TTSAA	3 cut(s)	92, 208, 431
AjiI	CACGTC	1 cut(s)	323
AluBI	AGCT	4 cut(s)	247, 261, 349, 376
AluI	AGCT	4 cut(s)	247, 261, 349, 376
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	417
AsuHPI	GGTGA	2 cut(s)	447, 454
BanII	GRGCYC	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	284
BfrI	CTTAAG	1 cut(s)	233
BglII	AGATCT	1 cut(s)	239
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
BmgBI	CACGTC	1 cut(s)	323
BmiI	GGNNCC	1 cut(s)	442
BpiI	GAAGAC	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	53
BsaWI	WCCGGW	2 cut(s)	154, 464
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 464
Bse1I	ACTGG	2 cut(s)	146, 458
BseGI	GGATG	2 cut(s)	10, 249
BseLI	CCNNNNNNNGG	2 cut(s)	352, 464
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	2 cut(s)	146, 458
BseRI	GAGGAG	2 cut(s)	71, 287
BseXI	GCAGC	1 cut(s)	31
Bsh1285I	CGRYCG	1 cut(s)	105
BsiEI	CGRYCG	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	2 cut(s)	155, 465
BslI	CCNNNNNNNGG	2 cut(s)	352, 464
BsmAI	GTCTC	1 cut(s)	53
Bso31I	GGTCTC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	102, 211, 239
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	442
BspTI	CTTAAG	1 cut(s)	233
BspTNI	GGTCTC	1 cut(s)	53
BsrI	ACTGG	2 cut(s)	146, 458
BssMI	GATC	3 cut(s)	102, 211, 239
BstAFI	CTTAAG	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	2 cut(s)	10, 249
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	3 cut(s)	105, 214, 242
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	3 cut(s)	102, 211, 239
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 325
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	419
BstX2I	RGATCY	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	239
BtrI	CACGTC	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	10, 249
CfoI	GCGC	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	1 cut(s)	399
CviJI	RGCY	7 cut(s)	27, 247, 261, 319, 349, 376, 480
CviKI_1	RGCY	7 cut(s)	27, 247, 261, 319, 349, 376, 480
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	3 cut(s)	104, 213, 241
DpnII	GATC	3 cut(s)	102, 211, 239
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	1 cut(s)	402
FaiI	YATR	7 cut(s)	84, 201, 279, 339, 400, 447, 449
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FatI	CATG	1 cut(s)	398
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	2 cut(s)	17, 236
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	284
GlaI	GCGC	1 cut(s)	416
GluI	GCNGC	1 cut(s)	45
HapII	CCGG	2 cut(s)	155, 465
HhaI	GCGC	1 cut(s)	417
Hin1II	CATG	1 cut(s)	402
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HinfI	GANTC	3 cut(s)	151, 366, 452
HpaII	CCGG	2 cut(s)	155, 465
HphI	GGTGA	2 cut(s)	447, 454
Hpy188I	TCNGA	2 cut(s)	244, 365
Hpy188III	TCNNGA	3 cut(s)	137, 179, 405
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	2 cut(s)	47, 328
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 325
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	1 cut(s)	402
HspAI	GCGC	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	102, 211, 239
LpnPI	CCDG	6 cut(s)	127, 168, 359, 422, 471, 478
Lsp1109I	GCAGC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	2 cut(s)	453, 460
MalI	GATC	3 cut(s)	104, 213, 241
MboI	GATC	3 cut(s)	102, 211, 239
MboII	GAAGA	3 cut(s)	157, 160, 419
MflI	RGATCY	1 cut(s)	239
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	3 cut(s)	168, 386, 431
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	1 cut(s)	454
MnlI	CCTC	4 cut(s)	49, 189, 308, 470
MseI	TTAA	2 cut(s)	234, 315
MslI	CAYNNNNRTG	2 cut(s)	254, 397
MspCI	CTTAAG	1 cut(s)	233
MspI	CCGG	2 cut(s)	155, 465
MwoI	GCNNNNNNNGC	2 cut(s)	33, 325
NdeII	GATC	3 cut(s)	102, 211, 239
NlaIII	CATG	1 cut(s)	402
NlaIV	GGNNCC	1 cut(s)	442
NmuCI	GTSAC	2 cut(s)	453, 460
PfeI	GAWTC	2 cut(s)	151, 366
PflMI	CCANNNNNTGG	1 cut(s)	352
PkrI	GCNGC	1 cut(s)	46
Ple19I	CGATCG	1 cut(s)	105
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
Psp124BI	GAGCTC	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	239
PvuI	CGATCG	1 cut(s)	105
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	2 cut(s)	254, 397
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	234, 315
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	3 cut(s)	102, 211, 239
SchI	GAGTC	1 cut(s)	461
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	8 cut(s)	200, 249, 263, 289, 325, 351, 378, 446
SmiMI	CAYNNNNRTG	2 cut(s)	254, 397
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	3 cut(s)	168, 386, 431
SspMI	CTAG	1 cut(s)	284
SstI	GAGCTC	1 cut(s)	249
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	2 cut(s)	105, 369
TasI	AATT	3 cut(s)	168, 386, 431
TfiI	GAWTC	2 cut(s)	151, 366
Tru1I	TTAA	2 cut(s)	234, 315
Tru9I	TTAA	2 cut(s)	234, 315
TseFI	GTSAC	2 cut(s)	453, 460
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	2 cut(s)	453, 460
TspDTI	ATGAA	1 cut(s)	354
Van91I	CCANNNNNTGG	1 cut(s)	352
Vha464I	CTTAAG	1 cut(s)	233
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.