Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004046.1

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Reverse (-)

26447 .. 27191

Gene Structure 745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004046.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgcctgttgattacatgacaaggaggtttggtttgaaagaccatctctgctgggaattcctcaagagatgtgagctcatccttgtcaacctcatctcagattctaggttcttgtctttccttccatctgtagtggctactgccacaatgctgcacgttgtcaataacattgagccttgtcttcaagttgagtatgaaaaccagctcttgactattctcggaatcgacaagggtttggcggatgattgctctaagctcataatggaactgtcatcatcgtggtcaagaaacaagcgcaagtttggttactcaattcctgggagcccaaatggagtcattgacatatcattcagctcggacagctcaaatgactcatgggccgtggcctcatcagtctcgtcctcaccggaacctctgtccaagaaaagcagggctctggaaaagctcaaccaaacagcaaatgcagcagctgatattctcagccttccacgccttccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

166

Amino Acids

18.38

Weight (kDa)

6.11

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	56
AgsI	TTSAA	2 cut(s)	37, 185
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	7 cut(s)	76, 205, 256, 354, 363, 445, 470
AluI	AGCT	7 cut(s)	76, 205, 256, 354, 363, 445, 470
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	400
AlwNI	CAGNNNCTG	1 cut(s)	470
AoxI	GGCC	2 cut(s)	378, 384
ApeKI	GCWGC	3 cut(s)	151, 464, 467
ApoI	RAATTY	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	378
AsuHPI	GGTGA	1 cut(s)	396
BanII	GRGCYC	3 cut(s)	78, 326, 436
BbsI	GAAGAC	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	3 cut(s)	138, 476, 479
BccI	CCATC	2 cut(s)	51, 133
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	400
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	1 cut(s)	129
BisI	GCNGC	3 cut(s)	152, 465, 468
BlsI	GCNGC	3 cut(s)	153, 466, 469
Bme1390I	CCNGG	1 cut(s)	318
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	2 cut(s)	323, 411
BmrFI	CCNGG	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	317, 381
BsaWI	WCCGGW	1 cut(s)	406
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	317, 381
BseGI	GGATG	2 cut(s)	78, 247
BseMII	CTCAG	2 cut(s)	111, 493
BseXI	GCAGC	3 cut(s)	138, 476, 479
BseYI	CCCAGC	1 cut(s)	51
BsgI	GTGCAG	1 cut(s)	137
BshFI	GGCC	2 cut(s)	380, 386
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	407
BsmAI	GTCTC	1 cut(s)	400
BsnI	GGCC	2 cut(s)	380, 386
Bsp1286I	GDGCHC	3 cut(s)	78, 326, 436
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	2 cut(s)	380, 386
BspCNI	CTCAG	2 cut(s)	110, 492
BspLI	GGNNCC	2 cut(s)	323, 411
BssECI	CCNNGG	2 cut(s)	317, 381
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	270
BstDEI	CTNAG	3 cut(s)	97, 252, 479
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	78, 247
BstHHI	GCGC	1 cut(s)	297
BstMAI	GTCTC	1 cut(s)	400
BstMWI	GCNNNNNNNGC	3 cut(s)	360, 464, 489
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	316
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	3 cut(s)	138, 476, 479
BstV2I	GAAGAC	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	380, 386
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	78, 247
CaiI	CAGNNNCTG	1 cut(s)	470
CfoI	GCGC	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	378
CviAII	CATG	2 cut(s)	16, 375
DdeI	CTNAG	3 cut(s)	97, 252, 479
EciI	GGCGGA	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	76
Eco24I	GRGCYC	3 cut(s)	78, 326, 436
Eco53kI	GAGCTC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	316
EcoT38I	GRGCYC	3 cut(s)	78, 326, 436
FaeI	CATG	2 cut(s)	19, 378
FaiI	YATR	5 cut(s)	17, 195, 260, 344, 376
FatI	CATG	2 cut(s)	15, 374
Fnu4HI	GCNGC	3 cut(s)	152, 465, 468
FokI	GGATG	2 cut(s)	65, 254
FriOI	GRGCYC	3 cut(s)	78, 326, 436
Fsp4HI	GCNGC	3 cut(s)	152, 465, 468
FspBI	CTAG	1 cut(s)	105
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	3 cut(s)	152, 465, 468
GsaI	CCCAGC	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	380, 386
HapII	CCGG	1 cut(s)	407
HhaI	GCGC	1 cut(s)	297
Hin1II	CATG	2 cut(s)	19, 378
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	4 cut(s)	101, 222, 333, 371
HpaII	CCGG	1 cut(s)	407
HphI	GGTGA	1 cut(s)	396
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	3 cut(s)	100, 221, 358
Hpy188III	TCNNGA	4 cut(s)	64, 208, 285, 437
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	2 cut(s)	131, 494
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	2 cut(s)	154, 464
HpyF10VI	GCNNNNNNNGC	3 cut(s)	360, 464, 489
HpyF3I	CTNAG	3 cut(s)	97, 252, 479
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	19, 378
HspAI	GCGC	1 cut(s)	295
LmnI	GCTCC	1 cut(s)	321
LpnPI	CCDG	8 cut(s)	18, 37, 215, 303, 330, 415, 420, 422
Lsp1109I	GCAGC	3 cut(s)	138, 476, 479
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	305
MboII	GAAGA	1 cut(s)	173
MhlI	GDGCHC	3 cut(s)	78, 326, 436
MluCI	AATT	2 cut(s)	56, 312
MlyI	GAGTC	2 cut(s)	342, 365
MnlI	CCTC	6 cut(s)	18, 71, 101, 397, 412, 423
MslI	CAYNNNNRTG	1 cut(s)	277
MspA1I	CMGCKG	1 cut(s)	470
MspI	CCGG	1 cut(s)	407
MspR9I	CCNGG	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	3 cut(s)	360, 464, 489
NlaIII	CATG	2 cut(s)	19, 378
NlaIV	GGNNCC	2 cut(s)	323, 411
PfeI	GAWTC	2 cut(s)	101, 222
PkrI	GCNGC	3 cut(s)	153, 466, 469
PleI	GAGTC	2 cut(s)	341, 365
PpsI	GAGTC	2 cut(s)	341, 365
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	316
PspFI	CCCAGC	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	323, 411
PspPI	GGNCC	1 cut(s)	378
PstNI	CAGNNNCTG	1 cut(s)	470
PvuII	CAGCTG	1 cut(s)	470
RseI	CAYNNNNRTG	1 cut(s)	277
SacI	GAGCTC	1 cut(s)	78
SatI	GCNGC	3 cut(s)	152, 465, 468
Sau96I	GGNCC	1 cut(s)	378
SchI	GAGTC	2 cut(s)	342, 365
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	3 cut(s)	78, 326, 436
SfcI	CTRYAG	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	2 cut(s)	56, 312
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	1 cut(s)	105
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	270
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	225
TasI	AATT	2 cut(s)	56, 312
TfiI	GAWTC	2 cut(s)	101, 222
TseI	GCWGC	3 cut(s)	151, 464, 467
TspDTI	ATGAA	1 cut(s)	210
XapI	RAATTY	1 cut(s)	56
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.