Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Forward (+)

59953765 .. 59955834

Gene Structure 2070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00209710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCAATGAACCAAAATGAGCCACAAAATGAGCAAAGCAATTGCAATTCATTCTTGCTGGATGATGCTTTGTTCTGTGGAGAAGAGAAATGGGAGGAGGAAGATGAAGTGAGTGAGGTGTACAATGGTGATGATGATGAAATAAGCAACAATAATGACGACATTATTAATGGAAAAACCCAAAAAAACCCATCTCTGTTTCCTCTGTTTTTGTTGGAGCAAGATCTGTTTTGGGAGGATGAAGAGCTTCTTTCTCTCTTCTCCAAAGAACAGCAGCAGCCGGAAACCCATCTGAACGACGCCGTTTTGGTGGCGCGTCGCCGGGAGGCGGTGGAGTGGATGCTGAAAGTGAATGCCCATTATGGATTCACAGCTCTCACTGCAATCCTAGCCGTGAACTACTTCGACAGGTTCATTTCCAGCGTCCATTTCCAGAGAGACAAGCCCTGGATGGTTCAGCTCGTCTCTGTTGCTTGCATCTCTCTGGCTGCCAAAGTGGAAGAGACCCAAGTCCCTCTTCTTCTAGACCTTCAAGTGGAGGACACCAAGTATGTTTTCGAGGCCAAAACGGTTCAAAGAATGGAGCTTTTGGTGCTCTCAACTCTTCAATGGAGGATGCACCCAGTGACTCCAATCTCTTTCCTTGACCACATCATAAGAAGGCTTGGATTGAAGACTAGTCTTCACTGGGAGTTTCTGAAGCGCTGTGAGAGTCTGCTTCTGTCTTTGGTGTTGGATTCAAGATGCATTTGTTATCTCCCTTCTGTTTTGGCCACTGCTACAATGATGAGGGTCATAGACCTTGTTGAGCCTTGTAAAGCTGTGGAATACCAAACCCAACTTCTGGGGGTCCTCAAAATAAGCAAGGAGATGGTGAATGACTGTTATACCCTCATCCTTGAGATGTCAAACTATGGCTGCAAGAGCAACCCCCTTAAACGCAAGCATGCGCAAATCCCAGGGAGCCCAAGTGGAGTGATTGATGCATACTTCAGTTCTGAAAGCTCAAATGACTCCTGGGCTGCGGGTTCATCGGTTTCTTCTTCGCCGGAGCCACAGTTCAAGAAGATCAAAGCAGAGGCTTCATCACTCAACAGGCTCTTGGGCATTGTTGGTAGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

374

Amino Acids

42.45

Weight (kDa)

4.83

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	102 - 206	1.2e-26	Cyclin, N-terminal domain
Cyclin_C	PF02984	209 - 317	3.6e-16	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	951
AccB7I	CCANNNNNTGG	1 cut(s)	844
AccII	CGCG	1 cut(s)	316
AciI	CCGC	2 cut(s)	329, 1025
AcoI	YGGCCR	1 cut(s)	771
AcuI	CTGAAG	2 cut(s)	719, 976
AcyI	GRCGYC	1 cut(s)	300
AdeI	CACNNNGTG	1 cut(s)	625
AfaI	GTAC	1 cut(s)	122
AfeI	AGCGCT	1 cut(s)	704
AfiI	CCNNNNNNNGG	3 cut(s)	328, 535, 844
AgsI	TTSAA	6 cut(s)	533, 575, 608, 673, 741, 1063
AhlI	ACTAGT	1 cut(s)	677
AjnI	CCWGG	3 cut(s)	446, 958, 1016
AjuI	GAANNNNNNNTTGG	6 cut(s)	501, 533, 539, 571, 825, 857
AloI	GAACNNNNNNTCC	2 cut(s)	1043, 1075
AluBI	AGCT	6 cut(s)	247, 374, 460, 586, 821, 1005
AluI	AGCT	6 cut(s)	247, 374, 460, 586, 821, 1005
Alw21I	GWGCWC	1 cut(s)	597
Alw26I	GTCTC	3 cut(s)	432, 469, 497
Aor51HI	AGCGCT	1 cut(s)	704
AoxI	GGCC	2 cut(s)	561, 771
ApeKI	GCWGC	5 cut(s)	274, 277, 488, 918, 1022
AseI	ATTAAT	1 cut(s)	168
Asp700I	GAANNNNTTC	2 cut(s)	246, 401
AspLEI	GCGC	3 cut(s)	316, 705, 952
AspS9I	GGNCC	1 cut(s)	850
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	2 cut(s)	140, 886
AvaII	GGWCC	1 cut(s)	850
BalI	TGGCCA	1 cut(s)	773
BanII	GRGCYC	1 cut(s)	968
BbsI	GAAGAC	2 cut(s)	674, 680
Bbv12I	GWGCWC	1 cut(s)	597
BbvI	GCAGC	5 cut(s)	286, 289, 475, 905, 1009
BccI	CCATC	4 cut(s)	199, 297, 445, 865
BceAI	ACGGC	2 cut(s)	287, 377
BciT130I	CCWGG	3 cut(s)	448, 960, 1018
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	3 cut(s)	432, 469, 497
BcuI	ACTAGT	1 cut(s)	677
BfaI	CTAG	3 cut(s)	389, 524, 678
BfoI	RGCGCY	1 cut(s)	706
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	5 cut(s)	275, 278, 489, 919, 1023
BlsI	GCNGC	5 cut(s)	276, 279, 490, 920, 1024
Bme1390I	CCNGG	4 cut(s)	323, 448, 960, 1018
Bme18I	GGWCC	1 cut(s)	850
BmgT120I	GGNCC	1 cut(s)	850
BmiI	GGNNCC	3 cut(s)	851, 965, 1053
BmrFI	CCNGG	4 cut(s)	323, 448, 960, 1018
BmrI	ACTGGG	2 cut(s)	617, 697
BmsI	GCATC	6 cut(s)	55, 330, 486, 606, 734, 973
BmuI	ACTGGG	2 cut(s)	617, 697
BoxI	GACNNNNGTC	1 cut(s)	509
BpiI	GAAGAC	2 cut(s)	674, 680
BpuEI	CTTGAG	1 cut(s)	920
BpuMI	CCSGG	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	4 cut(s)	446, 958, 959, 1017
BsaXI	ACNNNNNCTCC	4 cut(s)	955, 985, 1043, 1073
Bsc4I	CCNNNNNNNGG	3 cut(s)	328, 535, 844
Bse1I	ACTGG	2 cut(s)	623, 692
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	3 cut(s)	448, 960, 1018
BseDI	CCNNGG	4 cut(s)	446, 958, 959, 1017
BseGI	GGATG	6 cut(s)	67, 244, 345, 456, 621, 894
BseLI	CCNNNNNNNGG	3 cut(s)	328, 535, 844
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	2 cut(s)	623, 692
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	5 cut(s)	286, 289, 475, 905, 1009
Bsh1236I	CGCG	1 cut(s)	316
BshFI	GGCC	2 cut(s)	563, 773
BsiHKAI	GWGCWC	1 cut(s)	597
BsiSI	CCGG	3 cut(s)	281, 322, 1049
BslFI	GGGAC	2 cut(s)	497, 1104
BslI	CCNNNNNNNGG	3 cut(s)	328, 535, 844
BsmAI	GTCTC	3 cut(s)	432, 469, 497
BsmBI	CGTCTC	1 cut(s)	469
BsmFI	GGGAC	2 cut(s)	497, 1104
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	563, 773
Bso31I	GGTCTC	1 cut(s)	497
Bsp1286I	GDGCHC	2 cut(s)	597, 968
Bsp1407I	TGTACA	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	223, 1068
BspACI	CCGC	2 cut(s)	329, 1025
BspANI	GGCC	2 cut(s)	563, 773
BspFNI	CGCG	1 cut(s)	316
BspLI	GGNNCC	3 cut(s)	851, 965, 1053
BspQI	GCTCTTC	1 cut(s)	237
BspTNI	GGTCTC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	12
BsrGI	TGTACA	1 cut(s)	120
BsrI	ACTGG	2 cut(s)	623, 692
BssECI	CCNNGG	4 cut(s)	446, 958, 959, 1017
BssMI	GATC	2 cut(s)	223, 1068
BssNI	GRCGYC	1 cut(s)	300
Bst2UI	CCWGG	3 cut(s)	448, 960, 1018
Bst4CI	ACNGT	3 cut(s)	571, 884, 1059
Bst6I	CTCTTC	6 cut(s)	78, 237, 263, 495, 522, 609
BstACI	GRCGYC	1 cut(s)	300
BstAUI	TGTACA	1 cut(s)	120
BstC8I	GCNNGC	3 cut(s)	475, 944, 948
BstF5I	GGATG	6 cut(s)	67, 244, 345, 456, 621, 894
BstFNI	CGCG	1 cut(s)	316
BstH2I	RGCGCY	1 cut(s)	706
BstHHI	GCGC	3 cut(s)	316, 705, 952
BstKTI	GATC	2 cut(s)	226, 1071
BstMAI	GTCTC	3 cut(s)	432, 469, 497
BstMBI	GATC	2 cut(s)	223, 1068
BstMWI	GCNNNNNNNGC	4 cut(s)	380, 389, 592, 924
BstNI	CCWGG	3 cut(s)	448, 960, 1018
BstNSI	RCATGY	1 cut(s)	950
BstPAI	GACNNNNGTC	1 cut(s)	509
BstSCI	CCNGG	4 cut(s)	321, 446, 958, 1016
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	5 cut(s)	286, 289, 475, 905, 1009
BstV2I	GAAGAC	2 cut(s)	674, 680
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	2 cut(s)	563, 773
BtsCI	GGATG	6 cut(s)	67, 244, 345, 456, 621, 894
BtsI	GCAGTG	2 cut(s)	378, 774
BtsIMutI	CAGTG	4 cut(s)	378, 630, 685, 774
Cac8I	GCNNGC	3 cut(s)	475, 944, 948
CfoI	GCGC	3 cut(s)	316, 705, 952
Cfr13I	GGNCC	1 cut(s)	850
CseI	GACGC	3 cut(s)	305, 308, 412
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	947
CviQI	GTAC	1 cut(s)	121
DpnI	GATC	2 cut(s)	225, 1070
DpnII	GATC	2 cut(s)	223, 1068
DraIII	CACNNNGTG	1 cut(s)	625
EaeI	YGGCCR	1 cut(s)	771
Eam1104I	CTCTTC	6 cut(s)	78, 237, 263, 495, 522, 609
EarI	CTCTTC	6 cut(s)	78, 237, 263, 495, 522, 609
Eco24I	GRGCYC	1 cut(s)	968
Eco31I	GGTCTC	1 cut(s)	497
Eco47I	GGWCC	1 cut(s)	850
Eco47III	AGCGCT	1 cut(s)	704
Eco57I	CTGAAG	2 cut(s)	719, 976
EcoO109I	RGGNCCY	1 cut(s)	850
EcoRII	CCWGG	3 cut(s)	446, 958, 1016
EcoT22I	ATGCAT	2 cut(s)	749, 988
EcoT38I	GRGCYC	1 cut(s)	968
Esp3I	CGTCTC	1 cut(s)	469
FaeI	CATG	1 cut(s)	950
FaiI	YATR	8 cut(s)	363, 552, 656, 797, 888, 915, 948, 988
FalI	AAGNNNNNCTT	4 cut(s)	234, 266, 501, 533
FaqI	GGGAC	2 cut(s)	497, 1104
FatI	CATG	1 cut(s)	946
FauI	CCCGC	1 cut(s)	1018
Fnu4HI	GCNGC	5 cut(s)	275, 278, 489, 919, 1023
FokI	GGATG	6 cut(s)	74, 251, 352, 463, 628, 881
FriOI	GRGCYC	1 cut(s)	968
Fsp4HI	GCNGC	5 cut(s)	275, 278, 489, 919, 1023
FspBI	CTAG	3 cut(s)	389, 524, 678
FspI	TGCGCA	1 cut(s)	951
GlaI	GCGC	3 cut(s)	315, 704, 951
GluI	GCNGC	5 cut(s)	275, 278, 489, 919, 1023
HaeII	RGCGCY	1 cut(s)	706
HaeIII	GGCC	2 cut(s)	563, 773
HapII	CCGG	3 cut(s)	281, 322, 1049
HgaI	GACGC	3 cut(s)	305, 308, 412
HhaI	GCGC	3 cut(s)	316, 705, 952
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	1 cut(s)	950
Hin6I	GCGC	3 cut(s)	314, 703, 950
HinP1I	GCGC	3 cut(s)	314, 703, 950
HinfI	GANTC	5 cut(s)	366, 628, 712, 737, 1013
HpaII	CCGG	3 cut(s)	281, 322, 1049
HphI	GGTGA	2 cut(s)	140, 886
Hpy166II	GTNNAC	2 cut(s)	121, 397
Hpy188I	TCNGA	3 cut(s)	294, 699, 1000
Hpy188III	TCNNGA	4 cut(s)	433, 524, 741, 1063
Hpy8I	GTNNAC	2 cut(s)	121, 397
Hpy99I	CGWCG	2 cut(s)	302, 321
HpyAV	CCTTC	3 cut(s)	539, 654, 771
HpyCH4III	ACNGT	3 cut(s)	571, 884, 1059
HpyCH4V	TGCA	7 cut(s)	45, 383, 477, 619, 747, 921, 986
HpyF10VI	GCNNNNNNNGC	4 cut(s)	380, 389, 592, 924
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	950
HspAI	GCGC	3 cut(s)	314, 703, 950
Kzo9I	GATC	2 cut(s)	223, 1068
LguI	GCTCTTC	1 cut(s)	237
LmnI	GCTCC	4 cut(s)	217, 583, 963, 1051
Lsp1109I	GCAGC	5 cut(s)	286, 289, 475, 905, 1009
LweI	GCATC	6 cut(s)	55, 330, 486, 606, 734, 973
MaeI	CTAG	3 cut(s)	389, 524, 678
MaeIII	GTNAC	1 cut(s)	625
MalI	GATC	2 cut(s)	225, 1070
MboI	GATC	2 cut(s)	223, 1068
MfeI	CAATTG	1 cut(s)	40
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	2 cut(s)	597, 968
MlsI	TGGCCA	1 cut(s)	773
MluCI	AATT	2 cut(s)	40, 46
MluNI	TGGCCA	1 cut(s)	773
MlyI	GAGTC	3 cut(s)	622, 721, 1007
MmeI	TCCRAC	2 cut(s)	195, 714
Mox20I	TGGCCA	1 cut(s)	773
Mph1103I	ATGCAT	2 cut(s)	749, 988
MroXI	GAANNNNTTC	2 cut(s)	246, 401
MscI	TGGCCA	1 cut(s)	773
MseI	TTAA	2 cut(s)	168, 936
Msp20I	TGGCCA	1 cut(s)	773
MspI	CCGG	3 cut(s)	281, 322, 1049
MspR9I	CCNGG	4 cut(s)	323, 448, 960, 1018
MunI	CAATTG	1 cut(s)	40
Mva1269I	GAATGC	1 cut(s)	358
MvaI	CCWGG	3 cut(s)	448, 960, 1018
MvnI	CGCG	1 cut(s)	316
MwoI	GCNNNNNNNGC	4 cut(s)	380, 389, 592, 924
NciI	CCSGG	1 cut(s)	323
NdeII	GATC	2 cut(s)	223, 1068
NlaIII	CATG	1 cut(s)	950
NlaIV	GGNNCC	3 cut(s)	851, 965, 1053
NmuCI	GTSAC	1 cut(s)	625
NsbI	TGCGCA	1 cut(s)	951
NsiI	ATGCAT	2 cut(s)	749, 988
NspI	RCATGY	1 cut(s)	950
PaeI	GCATGC	1 cut(s)	950
PasI	CCCWGGG	1 cut(s)	959
PciSI	GCTCTTC	1 cut(s)	237
PctI	GAATGC	1 cut(s)	358
PdmI	GAANNNNTTC	2 cut(s)	246, 401
PfeI	GAWTC	2 cut(s)	366, 737
PflMI	CCANNNNNTGG	1 cut(s)	844
PkrI	GCNGC	5 cut(s)	276, 279, 490, 920, 1024
PleI	GAGTC	3 cut(s)	622, 720, 1007
PpsI	GAGTC	3 cut(s)	622, 720, 1007
PpuMI	RGGWCCY	1 cut(s)	850
PshAI	GACNNNNGTC	1 cut(s)	509
PshBI	ATTAAT	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	850
Psp6I	CCWGG	3 cut(s)	446, 958, 1016
PspGI	CCWGG	3 cut(s)	446, 958, 1016
PspN4I	GGNNCC	3 cut(s)	851, 965, 1053
PspPI	GGNCC	1 cut(s)	850
PspPPI	RGGWCCY	1 cut(s)	850
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	168, 936
SatI	GCNGC	5 cut(s)	275, 278, 489, 919, 1023
Sau3AI	GATC	2 cut(s)	223, 1068
Sau96I	GGNCC	1 cut(s)	850
SchI	GAGTC	3 cut(s)	622, 721, 1007
ScrFI	CCNGG	4 cut(s)	323, 448, 960, 1018
SduI	GDGCHC	2 cut(s)	597, 968
SfaNI	GCATC	6 cut(s)	55, 330, 486, 606, 734, 973
SinI	GGWCC	1 cut(s)	850
SmlI	CTYRAG	1 cut(s)	899
SmoI	CTYRAG	1 cut(s)	899
SpeI	ACTAGT	1 cut(s)	677
SphI	GCATGC	1 cut(s)	950
Sse9I	AATT	2 cut(s)	40, 46
SsiI	CCGC	2 cut(s)	329, 1025
SspMI	CTAG	3 cut(s)	389, 524, 678
StyD4I	CCNGG	4 cut(s)	321, 446, 958, 1016
TaaI	ACNGT	3 cut(s)	571, 884, 1059
TaqI	TCGA	2 cut(s)	405, 558
TasI	AATT	2 cut(s)	40, 46
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	2 cut(s)	366, 737
Tru1I	TTAA	2 cut(s)	168, 936
Tru9I	TTAA	2 cut(s)	168, 936
TscAI	CASTG	4 cut(s)	385, 630, 692, 781
TseFI	GTSAC	1 cut(s)	625
TseI	GCWGC	5 cut(s)	274, 277, 488, 918, 1022
Tsp45I	GTSAC	1 cut(s)	625
TspDTI	ATGAA	8 cut(s)	23, 39, 120, 153, 255, 403, 1020, 1074
TspRI	CASTG	4 cut(s)	385, 630, 692, 781
Van91I	CCANNNNNTGG	1 cut(s)	844
VpaK11BI	GGWCC	1 cut(s)	850
VspI	ATTAAT	1 cut(s)	168
XbaI	TCTAGA	1 cut(s)	523
XceI	RCATGY	1 cut(s)	950
XmnI	GAANNNNTTC	2 cut(s)	246, 401
XspI	CTAG	3 cut(s)	389, 524, 678
Zsp2I	ATGCAT	2 cut(s)	749, 988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.