Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Reverse (-)

6958500 .. 6960685

Gene Structure 2186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG070200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCAATGAACCAAAATGAGCCACAAAATGAGCAAAACAGTTCATTCTTGCTGGATGATGCTTTGTTCTGTGGAGAAGAGAAATGGGAGGAGGAAGATGAAGTGAGTGAGGTGTACAATGGTGATGATGATGAAATAAACTACAATAATGACGACATTATTAATGGAAAAACCCAAAAAAACCCATCTCTGTTTCCTCTGTTTTTGTTGGAGCAAGATCTGTTTTGGGAGGATGAAGAGCTTCTTTCTCTCTTCTCCAAAGAACAGCAGCAGCCGGAAGCCCATCTGAACGACGCCGTATTGGTGGCGCGTCGCCGTGAGGCGGTGGAGTGGATGCTGAAAGTGAATGCCCATTATGGATTCACAGCTCTCACTGCAATCCTAGCCGTGAACTACTTCGACAGGTTCATCTCCAGCGTCCATTTCCAGAGAGACAAGCCATGGATGGTTCAGCTCGTCTCTGTTGCTTGCATCTCTCTGGCTGCCAAAGTGGAAGAGACCCAAGTCCCTCTTCTTCTAGACCTTCAAGTAGAGGACACCAAGTATGTTTTCGAGGCCAAAACGGTTCAAAGAATGGAGCTTTTGGTGCTCTCAACTCTTCAATGGAGGATGCACCCAGTGACTCCAATCTCTTTCCTTGACCACATCATAAGAAGGCTTGGATTGAAGACTAGTCTTCACTGGGAGTTTCTGAAGCTCTGTGAGAGTCTGCTTCTGTCTTTGGTGTTGGGTAAGCAAAACTCCATAACGGTTACTAATCAAACCTTAGAACTTTCGATAAGAACAAAGAAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

265

Amino Acids

30.78

Weight (kDa)

4.7

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	100 - 204	5.9e-27	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	310
AciI	CCGC	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	713
AcyI	GRCGYC	1 cut(s)	294
AdeI	CACNNNGTG	1 cut(s)	619
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	4 cut(s)	527, 569, 602, 667
AhlI	ACTAGT	1 cut(s)	671
AjuI	GAANNNNNNNTTGG	4 cut(s)	495, 527, 533, 565
AluBI	AGCT	5 cut(s)	241, 368, 454, 580, 697
AluI	AGCT	5 cut(s)	241, 368, 454, 580, 697
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	3 cut(s)	426, 463, 491
AoxI	GGCC	1 cut(s)	555
ApeKI	GCWGC	3 cut(s)	268, 271, 482
AseI	ATTAAT	1 cut(s)	162
Asp700I	GAANNNNTTC	2 cut(s)	240, 395
AspLEI	GCGC	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	134
BbsI	GAAGAC	2 cut(s)	668, 674
Bbv12I	GWGCWC	1 cut(s)	591
BbvI	GCAGC	3 cut(s)	280, 283, 469
BccI	CCATC	3 cut(s)	193, 291, 439
BceAI	ACGGC	3 cut(s)	281, 300, 371
BcoDI	GTCTC	3 cut(s)	426, 463, 491
BcuI	ACTAGT	1 cut(s)	671
BfaI	CTAG	3 cut(s)	383, 518, 672
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	3 cut(s)	269, 272, 483
BlsI	GCNGC	3 cut(s)	270, 273, 484
BmrI	ACTGGG	2 cut(s)	611, 691
BmsI	GCATC	4 cut(s)	49, 324, 480, 600
BmuI	ACTGGG	2 cut(s)	611, 691
BoxI	GACNNNNGTC	1 cut(s)	503
BpiI	GAAGAC	2 cut(s)	668, 674
BpmI	CTGGAG	1 cut(s)	397
BsaHI	GRCGYC	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse1I	ACTGG	2 cut(s)	617, 686
Bse3DI	GCAATG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	440
BseGI	GGATG	5 cut(s)	61, 238, 339, 450, 615
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	2 cut(s)	617, 686
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	3 cut(s)	280, 283, 469
Bsh1236I	CGCG	1 cut(s)	310
BshFI	GGCC	1 cut(s)	557
BsiHKAI	GWGCWC	1 cut(s)	591
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	3 cut(s)	426, 463, 491
BsmBI	CGTCTC	1 cut(s)	463
BsmFI	GGGAC	1 cut(s)	491
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	557
Bso31I	GGTCTC	1 cut(s)	491
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	217
Bsp19I	CCATGG	1 cut(s)	440
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	557
BspFNI	CGCG	1 cut(s)	310
BspQI	GCTCTTC	1 cut(s)	231
BspTNI	GGTCTC	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	12
BsrGI	TGTACA	1 cut(s)	114
BsrI	ACTGG	2 cut(s)	617, 686
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	1 cut(s)	217
BssNI	GRCGYC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	440
Bst4CI	ACNGT	3 cut(s)	41, 565, 751
Bst6I	CTCTTC	6 cut(s)	72, 231, 257, 489, 516, 603
BstACI	GRCGYC	1 cut(s)	294
BstAUI	TGTACA	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	469
BstDEI	CTNAG	1 cut(s)	766
BstDSI	CCRYGG	1 cut(s)	440
BstF5I	GGATG	5 cut(s)	61, 238, 339, 450, 615
BstFNI	CGCG	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	3 cut(s)	426, 463, 491
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 383, 586
BstPAI	GACNNNNGTC	1 cut(s)	503
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	3 cut(s)	280, 283, 469
BstV2I	GAAGAC	2 cut(s)	668, 674
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	557
BtgI	CCRYGG	1 cut(s)	440
BtsCI	GGATG	5 cut(s)	61, 238, 339, 450, 615
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	3 cut(s)	372, 624, 679
Cac8I	GCNNGC	1 cut(s)	469
CfoI	GCGC	1 cut(s)	310
CseI	GACGC	3 cut(s)	299, 302, 406
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	1 cut(s)	441
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	1 cut(s)	766
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
DraIII	CACNNNGTG	1 cut(s)	619
Eam1104I	CTCTTC	6 cut(s)	72, 231, 257, 489, 516, 603
EarI	CTCTTC	6 cut(s)	72, 231, 257, 489, 516, 603
Eco130I	CCWWGG	1 cut(s)	440
Eco31I	GGTCTC	1 cut(s)	491
Eco57I	CTGAAG	1 cut(s)	713
EcoT14I	CCWWGG	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	440
Esp3I	CGTCTC	1 cut(s)	463
FaeI	CATG	1 cut(s)	444
FaiI	YATR	5 cut(s)	357, 442, 546, 650, 746
FalI	AAGNNNNNCTT	4 cut(s)	228, 260, 495, 527
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	1 cut(s)	440
Fnu4HI	GCNGC	3 cut(s)	269, 272, 483
FokI	GGATG	5 cut(s)	68, 245, 346, 457, 622
Fsp4HI	GCNGC	3 cut(s)	269, 272, 483
FspBI	CTAG	3 cut(s)	383, 518, 672
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	3 cut(s)	269, 272, 483
GsuI	CTGGAG	1 cut(s)	397
HaeIII	GGCC	1 cut(s)	557
HapII	CCGG	1 cut(s)	275
HgaI	GACGC	3 cut(s)	299, 302, 406
HhaI	GCGC	1 cut(s)	310
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	1 cut(s)	444
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HinfI	GANTC	3 cut(s)	360, 622, 706
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	2 cut(s)	115, 391
Hpy188I	TCNGA	2 cut(s)	288, 693
Hpy188III	TCNNGA	2 cut(s)	427, 518
Hpy8I	GTNNAC	2 cut(s)	115, 391
Hpy99I	CGWCG	2 cut(s)	296, 315
HpyAV	CCTTC	2 cut(s)	533, 648
HpyCH4III	ACNGT	3 cut(s)	41, 565, 751
HpyCH4V	TGCA	3 cut(s)	377, 471, 613
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 383, 586
HpyF3I	CTNAG	1 cut(s)	766
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	444
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	1 cut(s)	217
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	2 cut(s)	211, 577
LpnPI	CCDG	8 cut(s)	38, 288, 388, 427, 440, 464, 630, 667
Lsp1109I	GCAGC	3 cut(s)	280, 283, 469
LweI	GCATC	4 cut(s)	49, 324, 480, 600
MaeI	CTAG	3 cut(s)	383, 518, 672
MaeIII	GTNAC	2 cut(s)	619, 751
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	591
MlyI	GAGTC	2 cut(s)	616, 715
MmeI	TCCRAC	1 cut(s)	189
MroXI	GAANNNNTTC	2 cut(s)	240, 395
MseI	TTAA	1 cut(s)	162
MspI	CCGG	1 cut(s)	275
Mva1269I	GAATGC	1 cut(s)	352
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	3 cut(s)	374, 383, 586
NcoI	CCATGG	1 cut(s)	440
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	1 cut(s)	444
NmuCI	GTSAC	1 cut(s)	619
PciSI	GCTCTTC	1 cut(s)	231
PctI	GAATGC	1 cut(s)	352
PdmI	GAANNNNTTC	2 cut(s)	240, 395
PfeI	GAWTC	1 cut(s)	360
PkrI	GCNGC	3 cut(s)	270, 273, 484
PleI	GAGTC	2 cut(s)	616, 714
PpsI	GAGTC	2 cut(s)	616, 714
PshAI	GACNNNNGTC	1 cut(s)	503
PshBI	ATTAAT	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	3 cut(s)	269, 272, 483
Sau3AI	GATC	1 cut(s)	217
SchI	GAGTC	2 cut(s)	616, 715
SduI	GDGCHC	1 cut(s)	591
SetI	ASST	9 cut(s)	114, 243, 370, 407, 456, 525, 582, 699, 767
SfaNI	GCATC	4 cut(s)	49, 324, 480, 600
SpeI	ACTAGT	1 cut(s)	671
SsiI	CCGC	1 cut(s)	323
SspMI	CTAG	3 cut(s)	383, 518, 672
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	3 cut(s)	41, 565, 751
TaqI	TCGA	3 cut(s)	399, 552, 776
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	360
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	3 cut(s)	379, 624, 686
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	3 cut(s)	268, 271, 482
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	6 cut(s)	23, 33, 114, 147, 249, 397
TspRI	CASTG	3 cut(s)	379, 624, 686
VspI	ATTAAT	1 cut(s)	162
XbaI	TCTAGA	1 cut(s)	517
XmnI	GAANNNNTTC	2 cut(s)	240, 395
XspI	CTAG	3 cut(s)	383, 518, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.