Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Reverse (-)

11154174 .. 11156481

Gene Structure 2308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22936

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCAATGAACCACAATGAGCCACAAAATGAGCAAAGCAGTTCATTCTTGCTGGATGATGCTTTGTTCTGTGGAGAAGAGAAATGGGAGGAGGAAGATGAAGTGAGTGAGGTGTACAATGGTGATGATGATGAAATAAACAACGATAATGACGACATTATTAATGGAAAAACCCAAAAAAACCCTTCTCTGTTTCCTCTGTTTTTGTTGGAGCAAGATCTGTTTTGGGAGGATGAAGAGCTTCTTTCTCTCTTCTCCAAAGAACAGAAGCAGCCGGAAGCCCATCTGAACGACGCCGTTTTGGTGGCTCGTCGCCGGGAGGCGGTGGAGTGGATGCTGAAAGTGAATGCCCATTATGGATTCACAGCTCTCACTGCAATCCTAGCAGTGAACTACTTCGACAGGTTCATCTCCAGCGTCCATTTCCAGAGAGACAAGCCCTGGATGGTTCAGCTCGTCTCTGTTGCTTGCATCTCTCTGGCTGCCAAAGTGGAAGAGACCCAAGTCCCTCTTCTTCTAGACCTTCAAGTGGAGGACACCAAGTATGTTTTCGAGGCCAAAACGGTTCAAAGAATGGAGCTTTTGGTGCTCTCAACTCTTCAATGGAGGATGCACCCAGTGACTCCAATCTCTTTCCTTGACCACATCATAAGAAGGCTTGGATTGAAGACTAGTCTTCATTGGGAGTTTCTGAAGCGCTGTGAGAGTCTGCTTCTGTCTTTGGTGTTGGATTCAAGATGCATTGGTTATCTCCCTTCTGTTTTGGCCACTGCTACAATGATGAGGGTCATAGACCTTGTTGAGCCTTGTAAAGCTGTGGAATACCAAACCCAACTTCTGGGGGTCCTCAAAATAAGCAAGGAGAAGGTGAATGACTGTTATACCCTCATCCTTGAGATGTCAAACTATGGCTGCAAAAGCAACCCCCTTAAACGCAAGCATGCGCAAATCCCAGGGAGCCCAAGTGGAGTGATTGATGCATACTTCAGTTCTGAAAGCTCGAATGACTCCTGGGCTGTGGGTTCATCGGTTTCTTCGTCGCCGGAGCCACAGTTCAAGAAGATCAAAGCAGAGGCTTCATCACTCAACAGGCTCTTGGGCATTGTTGGTAGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

372

Amino Acids

42.2

Weight (kDa)

4.93

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	102 - 204	1.4e-26	Cyclin, N-terminal domain
Cyclin_C	PF02984	207 - 315	8.1e-17	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	945
AccB7I	CCANNNNNTGG	1 cut(s)	838
AciI	CCGC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	765
AcuI	CTGAAG	2 cut(s)	713, 970
AcyI	GRCGYC	1 cut(s)	294
AdeI	CACNNNGTG	1 cut(s)	619
AfaI	GTAC	1 cut(s)	116
AfeI	AGCGCT	1 cut(s)	698
AfiI	CCNNNNNNNGG	3 cut(s)	322, 529, 838
AgsI	TTSAA	6 cut(s)	527, 569, 602, 667, 735, 1057
AhlI	ACTAGT	1 cut(s)	671
AjnI	CCWGG	3 cut(s)	440, 952, 1010
AjuI	GAANNNNNNNTTGG	6 cut(s)	495, 527, 533, 565, 819, 851
AloI	GAACNNNNNNTCC	2 cut(s)	1037, 1069
AluBI	AGCT	6 cut(s)	241, 368, 454, 580, 815, 999
AluI	AGCT	6 cut(s)	241, 368, 454, 580, 815, 999
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	3 cut(s)	426, 463, 491
Aor51HI	AGCGCT	1 cut(s)	698
AoxI	GGCC	2 cut(s)	555, 765
ApeKI	GCWGC	3 cut(s)	271, 482, 912
AseI	ATTAAT	1 cut(s)	162
Asp700I	GAANNNNTTC	2 cut(s)	240, 395
AspLEI	GCGC	2 cut(s)	699, 946
AspS9I	GGNCC	1 cut(s)	844
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	2 cut(s)	134, 880
AvaII	GGWCC	1 cut(s)	844
BalI	TGGCCA	1 cut(s)	767
BanII	GRGCYC	1 cut(s)	962
BbsI	GAAGAC	2 cut(s)	668, 674
Bbv12I	GWGCWC	1 cut(s)	591
BbvI	GCAGC	3 cut(s)	283, 469, 899
BccI	CCATC	2 cut(s)	291, 439
BceAI	ACGGC	1 cut(s)	281
BciT130I	CCWGG	3 cut(s)	442, 954, 1012
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	3 cut(s)	426, 463, 491
BcuI	ACTAGT	1 cut(s)	671
BfaI	CTAG	3 cut(s)	383, 518, 672
BfoI	RGCGCY	1 cut(s)	700
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	3 cut(s)	272, 483, 913
BlsI	GCNGC	3 cut(s)	273, 484, 914
Bme1390I	CCNGG	4 cut(s)	317, 442, 954, 1012
Bme18I	GGWCC	1 cut(s)	844
BmgT120I	GGNCC	1 cut(s)	844
BmiI	GGNNCC	3 cut(s)	845, 959, 1047
BmrFI	CCNGG	4 cut(s)	317, 442, 954, 1012
BmrI	ACTGGG	1 cut(s)	611
BmsI	GCATC	6 cut(s)	49, 324, 480, 600, 728, 967
BmuI	ACTGGG	1 cut(s)	611
BoxI	GACNNNNGTC	1 cut(s)	503
BpiI	GAAGAC	2 cut(s)	668, 674
BpmI	CTGGAG	1 cut(s)	397
BpuEI	CTTGAG	1 cut(s)	914
BpuMI	CCSGG	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	4 cut(s)	440, 952, 953, 1011
BsaXI	ACNNNNNCTCC	4 cut(s)	949, 979, 1037, 1067
Bsc4I	CCNNNNNNNGG	3 cut(s)	322, 529, 838
Bse1I	ACTGG	1 cut(s)	617
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	3 cut(s)	442, 954, 1012
BseDI	CCNNGG	4 cut(s)	440, 952, 953, 1011
BseGI	GGATG	6 cut(s)	61, 238, 339, 450, 615, 888
BseLI	CCNNNNNNNGG	3 cut(s)	322, 529, 838
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	617
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	3 cut(s)	283, 469, 899
BshFI	GGCC	2 cut(s)	557, 767
BsiHKAI	GWGCWC	1 cut(s)	591
BsiSI	CCGG	3 cut(s)	275, 316, 1043
BslFI	GGGAC	2 cut(s)	491, 1098
BslI	CCNNNNNNNGG	3 cut(s)	322, 529, 838
BsmAI	GTCTC	3 cut(s)	426, 463, 491
BsmBI	CGTCTC	1 cut(s)	463
BsmFI	GGGAC	2 cut(s)	491, 1098
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	2 cut(s)	557, 767
Bso31I	GGTCTC	1 cut(s)	491
Bsp1286I	GDGCHC	2 cut(s)	591, 962
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	217, 1062
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	2 cut(s)	557, 767
BspLI	GGNNCC	3 cut(s)	845, 959, 1047
BspQI	GCTCTTC	1 cut(s)	231
BspTNI	GGTCTC	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	12
BsrGI	TGTACA	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	617
BssECI	CCNNGG	4 cut(s)	440, 952, 953, 1011
BssMI	GATC	2 cut(s)	217, 1062
BssNI	GRCGYC	1 cut(s)	294
Bst2UI	CCWGG	3 cut(s)	442, 954, 1012
Bst4CI	ACNGT	3 cut(s)	565, 878, 1053
Bst6I	CTCTTC	6 cut(s)	72, 231, 257, 489, 516, 603
BstACI	GRCGYC	1 cut(s)	294
BstAUI	TGTACA	1 cut(s)	114
BstC8I	GCNNGC	3 cut(s)	469, 938, 942
BstF5I	GGATG	6 cut(s)	61, 238, 339, 450, 615, 888
BstH2I	RGCGCY	1 cut(s)	700
BstHHI	GCGC	2 cut(s)	699, 946
BstKTI	GATC	2 cut(s)	220, 1065
BstMAI	GTCTC	3 cut(s)	426, 463, 491
BstMBI	GATC	2 cut(s)	217, 1062
BstMWI	GCNNNNNNNGC	4 cut(s)	374, 383, 586, 918
BstNI	CCWGG	3 cut(s)	442, 954, 1012
BstNSI	RCATGY	1 cut(s)	944
BstPAI	GACNNNNGTC	1 cut(s)	503
BstSCI	CCNGG	4 cut(s)	315, 440, 952, 1010
BstV1I	GCAGC	3 cut(s)	283, 469, 899
BstV2I	GAAGAC	2 cut(s)	668, 674
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	557, 767
BtsCI	GGATG	6 cut(s)	61, 238, 339, 450, 615, 888
BtsI	GCAGTG	3 cut(s)	372, 393, 768
BtsIMutI	CAGTG	4 cut(s)	372, 393, 624, 768
Cac8I	GCNNGC	3 cut(s)	469, 938, 942
CfoI	GCGC	2 cut(s)	699, 946
Cfr13I	GGNCC	1 cut(s)	844
CseI	GACGC	2 cut(s)	302, 406
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	1 cut(s)	941
CviQI	GTAC	1 cut(s)	115
DpnI	GATC	2 cut(s)	219, 1064
DpnII	GATC	2 cut(s)	217, 1062
DraIII	CACNNNGTG	1 cut(s)	619
EaeI	YGGCCR	1 cut(s)	765
Eam1104I	CTCTTC	6 cut(s)	72, 231, 257, 489, 516, 603
EarI	CTCTTC	6 cut(s)	72, 231, 257, 489, 516, 603
Eco24I	GRGCYC	1 cut(s)	962
Eco31I	GGTCTC	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	844
Eco47III	AGCGCT	1 cut(s)	698
Eco57I	CTGAAG	2 cut(s)	713, 970
EcoO109I	RGGNCCY	1 cut(s)	844
EcoRII	CCWGG	3 cut(s)	440, 952, 1010
EcoT22I	ATGCAT	2 cut(s)	743, 982
EcoT38I	GRGCYC	1 cut(s)	962
Esp3I	CGTCTC	1 cut(s)	463
FaeI	CATG	1 cut(s)	944
FaiI	YATR	8 cut(s)	357, 546, 650, 791, 882, 909, 942, 982
FalI	AAGNNNNNCTT	4 cut(s)	228, 260, 495, 527
FaqI	GGGAC	2 cut(s)	491, 1098
FatI	CATG	1 cut(s)	940
Fnu4HI	GCNGC	3 cut(s)	272, 483, 913
FokI	GGATG	6 cut(s)	68, 245, 346, 457, 622, 875
FriOI	GRGCYC	1 cut(s)	962
Fsp4HI	GCNGC	3 cut(s)	272, 483, 913
FspBI	CTAG	3 cut(s)	383, 518, 672
FspI	TGCGCA	1 cut(s)	945
GlaI	GCGC	2 cut(s)	698, 945
GluI	GCNGC	3 cut(s)	272, 483, 913
GsuI	CTGGAG	1 cut(s)	397
HaeII	RGCGCY	1 cut(s)	700
HaeIII	GGCC	2 cut(s)	557, 767
HapII	CCGG	3 cut(s)	275, 316, 1043
HgaI	GACGC	2 cut(s)	302, 406
HhaI	GCGC	2 cut(s)	699, 946
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	1 cut(s)	944
Hin6I	GCGC	2 cut(s)	697, 944
HinP1I	GCGC	2 cut(s)	697, 944
HinfI	GANTC	5 cut(s)	360, 622, 706, 731, 1007
HpaII	CCGG	3 cut(s)	275, 316, 1043
HphI	GGTGA	2 cut(s)	134, 880
Hpy166II	GTNNAC	2 cut(s)	115, 391
Hpy188I	TCNGA	3 cut(s)	288, 693, 994
Hpy188III	TCNNGA	4 cut(s)	427, 518, 735, 1057
Hpy8I	GTNNAC	2 cut(s)	115, 391
Hpy99I	CGWCG	3 cut(s)	296, 315, 1042
HpyAV	CCTTC	5 cut(s)	195, 533, 648, 765, 859
HpyCH4III	ACNGT	3 cut(s)	565, 878, 1053
HpyCH4V	TGCA	6 cut(s)	377, 471, 613, 741, 915, 980
HpyF10VI	GCNNNNNNNGC	4 cut(s)	374, 383, 586, 918
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	944
HspAI	GCGC	2 cut(s)	697, 944
Kzo9I	GATC	2 cut(s)	217, 1062
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	4 cut(s)	211, 577, 957, 1045
Lsp1109I	GCAGC	3 cut(s)	283, 469, 899
LweI	GCATC	6 cut(s)	49, 324, 480, 600, 728, 967
MaeI	CTAG	3 cut(s)	383, 518, 672
MaeIII	GTNAC	1 cut(s)	619
MalI	GATC	2 cut(s)	219, 1064
MboI	GATC	2 cut(s)	217, 1062
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	2 cut(s)	591, 962
MlsI	TGGCCA	1 cut(s)	767
MluNI	TGGCCA	1 cut(s)	767
MlyI	GAGTC	3 cut(s)	616, 715, 1001
MmeI	TCCRAC	2 cut(s)	189, 708
Mox20I	TGGCCA	1 cut(s)	767
Mph1103I	ATGCAT	2 cut(s)	743, 982
MroXI	GAANNNNTTC	2 cut(s)	240, 395
MscI	TGGCCA	1 cut(s)	767
MseI	TTAA	2 cut(s)	162, 930
Msp20I	TGGCCA	1 cut(s)	767
MspI	CCGG	3 cut(s)	275, 316, 1043
MspR9I	CCNGG	4 cut(s)	317, 442, 954, 1012
Mva1269I	GAATGC	1 cut(s)	352
MvaI	CCWGG	3 cut(s)	442, 954, 1012
MwoI	GCNNNNNNNGC	4 cut(s)	374, 383, 586, 918
NciI	CCSGG	1 cut(s)	317
NdeII	GATC	2 cut(s)	217, 1062
NlaIII	CATG	1 cut(s)	944
NlaIV	GGNNCC	3 cut(s)	845, 959, 1047
NmuCI	GTSAC	1 cut(s)	619
NsbI	TGCGCA	1 cut(s)	945
NsiI	ATGCAT	2 cut(s)	743, 982
NspI	RCATGY	1 cut(s)	944
PaeI	GCATGC	1 cut(s)	944
PasI	CCCWGGG	1 cut(s)	953
PciSI	GCTCTTC	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	2 cut(s)	150, 1034
PctI	GAATGC	1 cut(s)	352
PdmI	GAANNNNTTC	2 cut(s)	240, 395
PfeI	GAWTC	2 cut(s)	360, 731
PflMI	CCANNNNNTGG	1 cut(s)	838
PkrI	GCNGC	3 cut(s)	273, 484, 914
PleI	GAGTC	3 cut(s)	616, 714, 1001
PpsI	GAGTC	3 cut(s)	616, 714, 1001
PpuMI	RGGWCCY	1 cut(s)	844
PshAI	GACNNNNGTC	1 cut(s)	503
PshBI	ATTAAT	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	844
Psp6I	CCWGG	3 cut(s)	440, 952, 1010
PspGI	CCWGG	3 cut(s)	440, 952, 1010
PspN4I	GGNNCC	3 cut(s)	845, 959, 1047
PspPI	GGNCC	1 cut(s)	844
PspPPI	RGGWCCY	1 cut(s)	844
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	162, 930
SatI	GCNGC	3 cut(s)	272, 483, 913
Sau3AI	GATC	2 cut(s)	217, 1062
Sau96I	GGNCC	1 cut(s)	844
SchI	GAGTC	3 cut(s)	616, 715, 1001
ScrFI	CCNGG	4 cut(s)	317, 442, 954, 1012
SduI	GDGCHC	2 cut(s)	591, 962
SfaNI	GCATC	6 cut(s)	49, 324, 480, 600, 728, 967
SinI	GGWCC	1 cut(s)	844
SmlI	CTYRAG	1 cut(s)	893
SmoI	CTYRAG	1 cut(s)	893
SpeI	ACTAGT	1 cut(s)	671
SphI	GCATGC	1 cut(s)	944
SsiI	CCGC	1 cut(s)	323
SspMI	CTAG	3 cut(s)	383, 518, 672
StyD4I	CCNGG	4 cut(s)	315, 440, 952, 1010
TaaI	ACNGT	3 cut(s)	565, 878, 1053
TaqI	TCGA	3 cut(s)	399, 552, 1001
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	2 cut(s)	360, 731
Tru1I	TTAA	2 cut(s)	162, 930
Tru9I	TTAA	2 cut(s)	162, 930
TscAI	CASTG	4 cut(s)	379, 393, 624, 775
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	3 cut(s)	271, 482, 912
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	9 cut(s)	23, 33, 114, 147, 249, 397, 668, 1014, 1068
TspRI	CASTG	4 cut(s)	379, 393, 624, 775
Van91I	CCANNNNNTGG	1 cut(s)	838
VpaK11BI	GGWCC	1 cut(s)	844
VspI	ATTAAT	1 cut(s)	162
XbaI	TCTAGA	1 cut(s)	517
XceI	RCATGY	1 cut(s)	944
XmnI	GAANNNNTTC	2 cut(s)	240, 395
XspI	CTAG	3 cut(s)	383, 518, 672
Zsp2I	ATGCAT	2 cut(s)	743, 982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.