Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Reverse (-)

66123004 .. 66126058

Gene Structure 3055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG479500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGATCCGCCATTTCTCTTGGACGCTCTGTTCTGCTCGGAACAACGTTTGGATGAGGAAGAGCAAGAAGCTACGGTGTTGGACTATTCAGAGGAATTTGTTGAAGATAGTTCTTTTTATAGCAACAACTCTTCGTCTTGTAAACAACAACAACAACCAATAAAGTCCCCAATCTTGCTAGAGCAAGACCTGTTCTGGGACGATGAGGAACTCACCTCTCTGTTGTCGAAAGAGAAACTGAATCAAGATCGGAAAATCCTGAATCCCAACTCGTCTTTGGCCGGGGCACGTAAGGAGGCTGTGGATTGGATGCTGAGGGTCAATGCCCACTACTCTTTCTCTGCTCTCACTGCGGTTCTGGCCGTCGATTACCTCGATAGGTTTTTCTTCAGCTTCCAATTTCAGACCGAGAAGCCATGGATGACACAGCTCGCTGCCGTGGCTTGTATCTCCCTTGCTGCAAAAGTGGAGGAGACCCAAGTCCCCTTATTACTAGACTTCCAAGTTGAGGACAGCAAGTATGTGTTCGAAGCTAAAACGATTAACAGAATGGAGATTTTGGTTCTCTCAACTCTTGATTGGAAGATGAATCCGGTGACCCCAATTTCGTTTCTTGATTACATGACAAGGAGGTTTGGTTTGAAAGACCATCTCTGCTGGGAATTCCTCAAGAGATGTGAGCTCATCATTGTCAATCTCATCTCAGATTCTAGGTTCTTGTCTTTCCTTCCATCTGTAGTGGCTACTGCCACAATGCTGCACGTTGTCAATAACATTGAGCCTTGTCTTCAAGTTGAGTATGAAAACCAGCTCTTGACTATTCTCGGAATCGACAAGGTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

281

Amino Acids

32.4

Weight (kDa)

4.51

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	91 - 197	7.5e-26	Cyclin, N-terminal domain
Cyclin_C	PF02984	199 - 279	1e-09	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	8, 353
AclI	AACGTT	1 cut(s)	46
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	279, 360
AcsI	RAATTY	2 cut(s)	95, 662
AcuI	CTGAAG	1 cut(s)	373
AfiI	CCNNNNNNNGG	2 cut(s)	196, 508
AgsI	TTSAA	3 cut(s)	104, 643, 791
AloI	GAACNNNNNNTCC	2 cut(s)	14, 46
AluBI	AGCT	6 cut(s)	71, 393, 430, 533, 682, 811
AluI	AGCT	6 cut(s)	71, 393, 430, 533, 682, 811
Alw21I	GWGCWC	1 cut(s)	684
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	279, 360
ApeKI	GCWGC	3 cut(s)	434, 458, 757
ApoI	RAATTY	2 cut(s)	95, 662
ArsI	GACNNNNNNTTYG	2 cut(s)	589, 621
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	2 cut(s)	205, 607
AsuII	TTCGAA	1 cut(s)	528
BaeGI	GKGCMC	1 cut(s)	289
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	684
BbsI	GAAGAC	1 cut(s)	779
Bbv12I	GWGCWC	1 cut(s)	684
BbvCI	CCTCAGC	1 cut(s)	314
BbvI	GCAGC	3 cut(s)	421, 445, 744
BccI	CCATC	2 cut(s)	657, 739
BceAI	ACGGC	2 cut(s)	347, 422
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	467
BfaI	CTAG	3 cut(s)	179, 494, 711
BfmI	CTRYAG	1 cut(s)	735
BisI	GCNGC	3 cut(s)	435, 459, 758
BlsI	GCNGC	3 cut(s)	436, 460, 759
Bme1390I	CCNGG	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	283
BmsI	GCATC	1 cut(s)	300
BoxI	GACNNNNGTC	1 cut(s)	479
BpiI	GAAGAC	1 cut(s)	779
Bpu10I	CCTNAGC	1 cut(s)	314
Bpu14I	TTCGAA	1 cut(s)	528
BpuEI	CTTGAG	1 cut(s)	653
BpuMI	CCSGG	1 cut(s)	283
BsaAI	YACGTR	1 cut(s)	290
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	3 cut(s)	282, 416, 438
BsaWI	WCCGGW	1 cut(s)	592
BsaXI	ACNNNNNCTCC	2 cut(s)	622, 652
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 508
BseDI	CCNNGG	3 cut(s)	282, 416, 438
BseGI	GGATG	3 cut(s)	58, 315, 426
BseLI	CCNNNNNNNGG	2 cut(s)	196, 508
BseMII	CTCAG	2 cut(s)	305, 717
BseRI	GAGGAG	1 cut(s)	485
BseSI	GKGCMC	1 cut(s)	289
BseXI	GCAGC	3 cut(s)	421, 445, 744
BseYI	CCCAGC	1 cut(s)	657
BsgI	GTGCAG	1 cut(s)	743
BshFI	GGCC	2 cut(s)	281, 362
BsiHKAI	GWGCWC	1 cut(s)	684
BsiSI	CCGG	2 cut(s)	282, 593
BslFI	GGGAC	3 cut(s)	151, 212, 467
BslI	CCNNNNNNNGG	2 cut(s)	196, 508
BsmAI	GTCTC	1 cut(s)	467
BsmFI	GGGAC	3 cut(s)	151, 212, 467
BsnI	GGCC	2 cut(s)	281, 362
Bso31I	GGTCTC	1 cut(s)	467
Bsp119I	TTCGAA	1 cut(s)	528
Bsp1286I	GDGCHC	2 cut(s)	289, 684
Bsp143I	GATC	2 cut(s)	4, 247
Bsp19I	CCATGG	1 cut(s)	416
BspACI	CCGC	2 cut(s)	8, 353
BspANI	GGCC	2 cut(s)	281, 362
BspCNI	CTCAG	2 cut(s)	306, 716
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	54
BspT104I	TTCGAA	1 cut(s)	528
BspTNI	GGTCTC	1 cut(s)	467
BssECI	CCNNGG	3 cut(s)	282, 416, 438
BssMI	GATC	2 cut(s)	4, 247
BssT1I	CCWWGG	1 cut(s)	416
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	2 cut(s)	54, 136
BstBAI	YACGTR	1 cut(s)	290
BstBI	TTCGAA	1 cut(s)	528
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	2 cut(s)	314, 703
BstDSI	CCRYGG	2 cut(s)	416, 438
BstEII	GGTNACC	1 cut(s)	595
BstF5I	GGATG	3 cut(s)	58, 315, 426
BstKTI	GATC	2 cut(s)	7, 250
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	2 cut(s)	4, 247
BstMWI	GCNNNNNNNGC	3 cut(s)	350, 359, 440
BstPAI	GACNNNNGTC	1 cut(s)	479
BstPI	GGTNACC	1 cut(s)	595
BstSCI	CCNGG	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	735
BstSLI	GKGCMC	1 cut(s)	289
BstV1I	GCAGC	3 cut(s)	421, 445, 744
BstV2I	GAAGAC	1 cut(s)	779
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	281, 362
BtgI	CCRYGG	2 cut(s)	416, 438
BtsCI	GGATG	3 cut(s)	58, 315, 426
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	432
CseI	GACGC	1 cut(s)	32
CviAII	CATG	2 cut(s)	417, 622
DdeI	CTNAG	2 cut(s)	314, 703
DpnI	GATC	2 cut(s)	6, 249
DpnII	GATC	2 cut(s)	4, 247
EaeI	YGGCCR	2 cut(s)	279, 360
Eam1104I	CTCTTC	2 cut(s)	54, 136
EarI	CTCTTC	2 cut(s)	54, 136
Ecl136II	GAGCTC	1 cut(s)	682
Eco130I	CCWWGG	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	684
Eco31I	GGTCTC	1 cut(s)	467
Eco53kI	GAGCTC	1 cut(s)	682
Eco57I	CTGAAG	1 cut(s)	373
Eco91I	GGTNACC	1 cut(s)	595
EcoICRI	GAGCTC	1 cut(s)	682
EcoO65I	GGTNACC	1 cut(s)	595
EcoRI	GAATTC	1 cut(s)	662
EcoT14I	CCWWGG	1 cut(s)	416
EcoT38I	GRGCYC	1 cut(s)	684
ErhI	CCWWGG	1 cut(s)	416
FaeI	CATG	2 cut(s)	420, 625
FaiI	YATR	5 cut(s)	120, 418, 522, 623, 801
FaqI	GGGAC	3 cut(s)	151, 212, 467
FatI	CATG	2 cut(s)	416, 621
Fnu4HI	GCNGC	3 cut(s)	435, 459, 758
FokI	GGATG	3 cut(s)	65, 322, 433
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	3 cut(s)	435, 459, 758
FspBI	CTAG	3 cut(s)	179, 494, 711
GluI	GCNGC	3 cut(s)	435, 459, 758
GsaI	CCCAGC	1 cut(s)	661
HaeIII	GGCC	2 cut(s)	281, 362
HapII	CCGG	2 cut(s)	282, 593
HgaI	GACGC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	420, 625
HinfI	GANTC	5 cut(s)	241, 262, 589, 707, 828
HpaII	CCGG	2 cut(s)	282, 593
HphI	GGTGA	2 cut(s)	205, 607
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	6 cut(s)	40, 91, 252, 405, 706, 827
Hpy188III	TCNNGA	6 cut(s)	245, 259, 575, 614, 670, 814
Hpy8I	GTNNAC	1 cut(s)	143
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	1 cut(s)	737
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	3 cut(s)	46, 289, 762
HpyCH4V	TGCA	2 cut(s)	461, 760
HpyF10VI	GCNNNNNNNGC	3 cut(s)	350, 359, 440
HpyF3I	CTNAG	2 cut(s)	314, 703
HpySE526I	ACGT	3 cut(s)	46, 289, 762
Hsp92II	CATG	2 cut(s)	420, 625
Kzo9I	GATC	2 cut(s)	4, 247
LguI	GCTCTTC	1 cut(s)	54
LpnPI	CCDG	8 cut(s)	181, 203, 272, 295, 344, 606, 643, 821
Lsp1109I	GCAGC	3 cut(s)	421, 445, 744
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	3 cut(s)	179, 494, 711
MaeII	ACGT	3 cut(s)	46, 289, 762
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	2 cut(s)	6, 249
MboI	GATC	2 cut(s)	4, 247
MboII	GAAGA	6 cut(s)	71, 116, 123, 379, 595, 779
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	289, 684
MluCI	AATT	4 cut(s)	95, 398, 603, 662
MmeI	TCCRAC	1 cut(s)	60
MseI	TTAA	2 cut(s)	543, 844
MspI	CCGG	2 cut(s)	282, 593
MspR9I	CCNGG	1 cut(s)	283
MwoI	GCNNNNNNNGC	3 cut(s)	350, 359, 440
NciI	CCSGG	1 cut(s)	283
NcoI	CCATGG	1 cut(s)	416
NdeII	GATC	2 cut(s)	4, 247
NlaIII	CATG	2 cut(s)	420, 625
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	595
NspV	TTCGAA	1 cut(s)	528
PciSI	GCTCTTC	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PfeI	GAWTC	5 cut(s)	241, 262, 589, 707, 828
PkrI	GCNGC	3 cut(s)	436, 460, 759
Ppu21I	YACGTR	1 cut(s)	290
PshAI	GACNNNNGTC	1 cut(s)	479
Psp124BI	GAGCTC	1 cut(s)	684
Psp1406I	AACGTT	1 cut(s)	46
PspEI	GGTNACC	1 cut(s)	595
PspFI	CCCAGC	1 cut(s)	657
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	4
SacI	GAGCTC	1 cut(s)	684
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	543, 844
SatI	GCNGC	3 cut(s)	435, 459, 758
Sau3AI	GATC	2 cut(s)	4, 247
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	2 cut(s)	289, 684
SfaNI	GCATC	1 cut(s)	300
SfcI	CTRYAG	1 cut(s)	735
SfuI	TTCGAA	1 cut(s)	528
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	4 cut(s)	95, 398, 603, 662
SsiI	CCGC	2 cut(s)	8, 353
SspMI	CTAG	3 cut(s)	179, 494, 711
SstI	GAGCTC	1 cut(s)	684
StyD4I	CCNGG	1 cut(s)	281
StyI	CCWWGG	1 cut(s)	416
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	3 cut(s)	49, 292, 765
TaqI	TCGA	5 cut(s)	227, 366, 375, 528, 831
TaqII	GACCGA	1 cut(s)	422
TasI	AATT	4 cut(s)	95, 398, 603, 662
TfiI	GAWTC	5 cut(s)	241, 262, 589, 707, 828
Tru1I	TTAA	2 cut(s)	543, 844
Tru9I	TTAA	2 cut(s)	543, 844
TscAI	CASTG	1 cut(s)	355
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	3 cut(s)	434, 458, 757
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	2 cut(s)	602, 816
TspRI	CASTG	1 cut(s)	355
XapI	RAATTY	2 cut(s)	95, 662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XspI	CTAG	3 cut(s)	179, 494, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.