Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Forward (+)

25218176 .. 25220954

Gene Structure 2779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g33760.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAAGAAGATGGATCAGCCATTTCTCTTGGACGCTCTCTTCTGCTCCGAGCAACATTTGGATGAGGAGGAGGAAGAGGTGTTGGACTATGAGTTTGTAGAAGATAGTTCTTTATATAGCAACACTACCTCTACATCTTTTATGCAAACACAAATAAAGTCCCCAATCTTGCTAGAGCAAGACTTGTTCTGGGACGATGAGGAACTTGCTTCTTTGTTAGCGAAAGAGAAAGTGAATCAGGATCGGAAAATCAAGAATCCCAGCGAGTCTTTGGCCCGGGCTCGTAAGGAGGCTGTGGATTGGATGCTGAGGGTCAACACCCACTACTCTTTCTCTGCTCTCACTGCAGTTCTGGCTGTTGATTACCTCGATAGGTGTTTCTCCCGCTTCCAGTTTCAGCCCGAGAAGCCATGGATGACACAGCTCGCTGCCGTGGCTTGTCTCTCTGTCGCTGCCAAGGTGGAGGAGACCCAAGTCCCTTTATTACTAGACCTCCAAGTGGAGGACAGTAAGTATGTGTTCGAAGCGAAAAATATCAGCAGGATGGAGATTATGGTTCTCTCGACTCTTGATTGGAGGATGAATCCGGTACCCCATCCTTCTCATCCAAATCTGGTCTCCTTATCCTCCTTGTTGATAAATTTGATGCCTTGCCCCAACAGTAGCACTAGTGAACAAAGAAAATTTCAAGTCTTTATTAAAATTTGGCCTTATTATCCTGCAGATTCTAGGTTCTTGTCTTTCCTTCCATCTGTAGCGGCTACTGCCACAATGCTGCACGTTGTCAATAACATTGAACCTTGTCTTCAAGTTGAGTATGAAAACCAGCTCTTGAGTATTCTCGGAATCGACAAGGGTGCGGTGGATGATTGCTCTAAGCTCATCATGGAATTGTCATCATCATGGTCGAGAAACAAGCGCAAGTTTGGTTCTTCAATTCCGGGGAGCCCAAATGGAGTCATTGACATCTCATTCAGCTCAGACAGCTCAAATGACTCATGGGCGGTGGCCTCATCAGTCTCGTCCTCACCGGAGCCTCTGTCCAAGAAAAGCAGAGCTCTGGAAAAGCAGCTTCTGGAGAAGCTCAACCACACTGCAAATGCAACAGCAGATATTCTCAGCCTTCCACGCCTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

380

Amino Acids

42.77

Weight (kDa)

4.94

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	77 - 195	3e-25	Cyclin, N-terminal domain
Cyclin_C	PF02984	197 - 296	6.6e-14	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	589
AccB1I	GGYRCC	1 cut(s)	589
AciI	CCGC	4 cut(s)	385, 758, 860, 1004
AclWI	GGATC	2 cut(s)	21, 249
AcsI	RAATTY	3 cut(s)	640, 683, 702
AfaI	GTAC	1 cut(s)	591
AfiI	CCNNNNNNNGG	2 cut(s)	499, 502
AgsI	TTSAA	4 cut(s)	689, 797, 809, 936
AhlI	ACTAGT	1 cut(s)	668
AluBI	AGCT	8 cut(s)	424, 829, 880, 978, 987, 1058, 1072, 1084
AluI	AGCT	8 cut(s)	424, 829, 880, 978, 987, 1058, 1072, 1084
Alw21I	GWGCWC	1 cut(s)	1060
Alw26I	GTCTC	4 cut(s)	446, 461, 622, 1024
AlwI	GGATC	2 cut(s)	21, 249
AlwNI	CAGNNNCTG	1 cut(s)	1075
Ama87I	CYCGRG	2 cut(s)	276, 401
AoxI	GGCC	3 cut(s)	273, 707, 1008
ApeKI	GCWGC	4 cut(s)	428, 452, 775, 1069
ApoI	RAATTY	3 cut(s)	640, 683, 702
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
Asp718I	GGTACC	1 cut(s)	589
AspLEI	GCGC	1 cut(s)	921
AspS9I	GGNCC	1 cut(s)	274
AsuC2I	CCSGG	3 cut(s)	277, 278, 942
AsuHPI	GGTGA	1 cut(s)	1020
AsuII	TTCGAA	1 cut(s)	522
AvaI	CYCGRG	2 cut(s)	276, 401
BanI	GGYRCC	1 cut(s)	589
BanII	GRGCYC	3 cut(s)	283, 950, 1060
BbsI	GAAGAC	1 cut(s)	797
Bbv12I	GWGCWC	1 cut(s)	1060
BbvCI	CCTCAGC	1 cut(s)	308
BbvI	GCAGC	4 cut(s)	415, 439, 762, 1081
BccI	CCATC	4 cut(s)	4, 538, 603, 757
BceAI	ACGGC	1 cut(s)	416
BcgI	CGANNNNNNTGC	2 cut(s)	839, 873
BcnI	CCSGG	3 cut(s)	277, 278, 942
BcoDI	GTCTC	4 cut(s)	446, 461, 622, 1024
BcuI	ACTAGT	1 cut(s)	668
BfaI	CTAG	4 cut(s)	173, 488, 669, 729
BfmI	CTRYAG	3 cut(s)	345, 720, 753
BisI	GCNGC	5 cut(s)	429, 453, 759, 776, 1070
BlsI	GCNGC	5 cut(s)	430, 454, 760, 777, 1071
Bme1390I	CCNGG	3 cut(s)	277, 278, 942
BmeT110I	CYCGRG	2 cut(s)	276, 401
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	3 cut(s)	591, 947, 1035
BmrFI	CCNGG	3 cut(s)	277, 278, 942
BmsI	GCATC	2 cut(s)	294, 636
BoxI	GACNNNNGTC	1 cut(s)	473
BpiI	GAAGAC	1 cut(s)	797
BpmI	CTGGAG	1 cut(s)	1097
Bpu10I	CCTNAGC	1 cut(s)	308
Bpu14I	TTCGAA	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	853
BpuMI	CCSGG	3 cut(s)	277, 278, 942
BsaI	GGTCTC	2 cut(s)	461, 622
BsaJI	CCNNGG	5 cut(s)	276, 410, 432, 456, 941
BsaWI	WCCGGW	2 cut(s)	586, 1030
BsaXI	ACNNNNNCTCC	4 cut(s)	477, 507, 1025, 1055
Bsc4I	CCNNNNNNNGG	2 cut(s)	499, 502
Bse1I	ACTGG	1 cut(s)	391
BseDI	CCNNGG	5 cut(s)	276, 410, 432, 456, 941
BseGI	GGATG	8 cut(s)	67, 309, 420, 549, 585, 595, 604, 871
BseLI	CCNNNNNNNGG	2 cut(s)	499, 502
BseMII	CTCAG	3 cut(s)	299, 993, 1132
BseNI	ACTGG	1 cut(s)	391
BseRI	GAGGAG	3 cut(s)	80, 83, 479
BseXI	GCAGC	4 cut(s)	415, 439, 762, 1081
BseYI	CCCAGC	1 cut(s)	260
BsgI	GTGCAG	1 cut(s)	761
BshFI	GGCC	3 cut(s)	275, 709, 1010
BshNI	GGYRCC	1 cut(s)	589
BsiHKAI	GWGCWC	1 cut(s)	1060
BsiHKCI	CYCGRG	2 cut(s)	276, 401
BsiSI	CCGG	4 cut(s)	277, 587, 941, 1031
BslFI	GGGAC	3 cut(s)	145, 206, 461
BslI	CCNNNNNNNGG	2 cut(s)	499, 502
BsmAI	GTCTC	4 cut(s)	446, 461, 622, 1024
BsmFI	GGGAC	3 cut(s)	145, 206, 461
BsnI	GGCC	3 cut(s)	275, 709, 1010
Bso31I	GGTCTC	2 cut(s)	461, 622
BsoBI	CYCGRG	2 cut(s)	276, 401
Bsp119I	TTCGAA	1 cut(s)	522
Bsp1286I	GDGCHC	3 cut(s)	283, 950, 1060
Bsp143I	GATC	2 cut(s)	13, 241
Bsp19I	CCATGG	1 cut(s)	410
BspACI	CCGC	4 cut(s)	385, 758, 860, 1004
BspANI	GGCC	3 cut(s)	275, 709, 1010
BspCNI	CTCAG	3 cut(s)	300, 992, 1131
BspLI	GGNNCC	3 cut(s)	591, 947, 1035
BspMAI	CTGCAG	2 cut(s)	349, 724
BspPI	GGATC	2 cut(s)	21, 249
BspT104I	TTCGAA	1 cut(s)	522
BspT107I	GGYRCC	1 cut(s)	589
BspTNI	GGTCTC	2 cut(s)	461, 622
BsrI	ACTGG	1 cut(s)	391
BssECI	CCNNGG	5 cut(s)	276, 410, 432, 456, 941
BssMI	GATC	2 cut(s)	13, 241
BssT1I	CCWWGG	2 cut(s)	410, 456
Bst4CI	ACNGT	2 cut(s)	509, 662
Bst6I	CTCTTC	2 cut(s)	44, 69
BstBI	TTCGAA	1 cut(s)	522
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	4 cut(s)	308, 876, 979, 1118
BstDSI	CCRYGG	2 cut(s)	410, 432
BstF5I	GGATG	8 cut(s)	67, 309, 420, 549, 585, 595, 604, 871
BstHHI	GCGC	1 cut(s)	921
BstKTI	GATC	2 cut(s)	16, 244
BstMAI	GTCTC	4 cut(s)	446, 461, 622, 1024
BstMBI	GATC	2 cut(s)	13, 241
BstMWI	GCNNNNNNNGC	7 cut(s)	344, 353, 406, 434, 764, 984, 1128
BstPAI	GACNNNNGTC	1 cut(s)	473
BstSCI	CCNGG	3 cut(s)	275, 276, 940
BstSFI	CTRYAG	3 cut(s)	345, 720, 753
BstV1I	GCAGC	4 cut(s)	415, 439, 762, 1081
BstV2I	GAAGAC	1 cut(s)	797
BsuRI	GGCC	3 cut(s)	275, 709, 1010
BtgI	CCRYGG	2 cut(s)	410, 432
BtsCI	GGATG	8 cut(s)	67, 309, 420, 549, 585, 595, 604, 871
BtsI	GCAGTG	2 cut(s)	342, 1092
BtsIMutI	CAGTG	2 cut(s)	342, 1092
Cac8I	GCNNGC	1 cut(s)	426
CaiI	CAGNNNCTG	1 cut(s)	1075
CfoI	GCGC	1 cut(s)	921
Cfr13I	GGNCC	1 cut(s)	274
Cfr9I	CCCGGG	1 cut(s)	276
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	590
CviAII	CATG	4 cut(s)	411, 886, 903, 999
CviQI	GTAC	1 cut(s)	590
DdeI	CTNAG	4 cut(s)	308, 876, 979, 1118
DpnI	GATC	2 cut(s)	15, 243
DpnII	GATC	2 cut(s)	13, 241
Eam1104I	CTCTTC	2 cut(s)	44, 69
EarI	CTCTTC	2 cut(s)	44, 69
Ecl136II	GAGCTC	1 cut(s)	1058
Eco130I	CCWWGG	2 cut(s)	410, 456
Eco24I	GRGCYC	3 cut(s)	283, 950, 1060
Eco31I	GGTCTC	2 cut(s)	461, 622
Eco53kI	GAGCTC	1 cut(s)	1058
Eco88I	CYCGRG	2 cut(s)	276, 401
EcoICRI	GAGCTC	1 cut(s)	1058
EcoT14I	CCWWGG	2 cut(s)	410, 456
EcoT38I	GRGCYC	3 cut(s)	283, 950, 1060
ErhI	CCWWGG	2 cut(s)	410, 456
FaeI	CATG	4 cut(s)	414, 889, 906, 1002
FaqI	GGGAC	3 cut(s)	145, 206, 461
FatI	CATG	4 cut(s)	410, 885, 902, 998
FauI	CCCGC	1 cut(s)	392
Fnu4HI	GCNGC	5 cut(s)	429, 453, 759, 776, 1070
FokI	GGATG	8 cut(s)	74, 316, 427, 556, 582, 591, 592, 878
FriOI	GRGCYC	3 cut(s)	283, 950, 1060
Fsp4HI	GCNGC	5 cut(s)	429, 453, 759, 776, 1070
FspBI	CTAG	4 cut(s)	173, 488, 669, 729
GlaI	GCGC	1 cut(s)	920
GluI	GCNGC	5 cut(s)	429, 453, 759, 776, 1070
GsaI	CCCAGC	1 cut(s)	264
GsuI	CTGGAG	1 cut(s)	1097
HaeIII	GGCC	3 cut(s)	275, 709, 1010
HapII	CCGG	4 cut(s)	277, 587, 941, 1031
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	921
Hin1II	CATG	4 cut(s)	414, 889, 906, 1002
Hin6I	GCGC	1 cut(s)	919
HinP1I	GCGC	1 cut(s)	919
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	9 cut(s)	235, 256, 266, 565, 583, 725, 846, 957, 995
HpaII	CCGG	4 cut(s)	277, 587, 941, 1031
HphI	GGTGA	1 cut(s)	1020
Hpy166II	GTNNAC	2 cut(s)	316, 674
Hpy188I	TCNGA	4 cut(s)	49, 246, 845, 982
Hpy188III	TCNNGA	8 cut(s)	239, 253, 562, 569, 832, 909, 1061, 1076
Hpy8I	GTNNAC	2 cut(s)	316, 674
HpyAV	CCTTC	3 cut(s)	609, 755, 1133
HpyCH4III	ACNGT	2 cut(s)	509, 662
HpyCH4IV	ACGT	1 cut(s)	780
HpyCH4V	TGCA	6 cut(s)	145, 347, 722, 778, 1097, 1103
HpyF10VI	GCNNNNNNNGC	7 cut(s)	344, 353, 406, 434, 764, 984, 1128
HpyF3I	CTNAG	4 cut(s)	308, 876, 979, 1118
HpySE526I	ACGT	1 cut(s)	780
Hsp92II	CATG	4 cut(s)	414, 889, 906, 1002
HspAI	GCGC	1 cut(s)	919
KpnI	GGTACC	1 cut(s)	593
Kzo9I	GATC	2 cut(s)	13, 241
LmnI	GCTCC	3 cut(s)	50, 945, 1033
Lsp1109I	GCAGC	4 cut(s)	415, 439, 762, 1081
LweI	GCATC	2 cut(s)	294, 636
MaeI	CTAG	4 cut(s)	173, 488, 669, 729
MaeII	ACGT	1 cut(s)	780
MalI	GATC	2 cut(s)	15, 243
MboI	GATC	2 cut(s)	13, 241
MboII	GAAGA	7 cut(s)	16, 19, 31, 86, 113, 797, 924
MhlI	GDGCHC	3 cut(s)	283, 950, 1060
MluCI	AATT	5 cut(s)	640, 683, 702, 890, 936
MlyI	GAGTC	4 cut(s)	275, 559, 966, 989
MmeI	TCCRAC	1 cut(s)	63
MseI	TTAA	1 cut(s)	699
MslI	CAYNNNNRTG	2 cut(s)	60, 901
MspI	CCGG	4 cut(s)	277, 587, 941, 1031
MspR9I	CCNGG	3 cut(s)	277, 278, 942
MwoI	GCNNNNNNNGC	7 cut(s)	344, 353, 406, 434, 764, 984, 1128
NciI	CCSGG	3 cut(s)	277, 278, 942
NcoI	CCATGG	1 cut(s)	410
NdeII	GATC	2 cut(s)	13, 241
NlaIII	CATG	4 cut(s)	414, 889, 906, 1002
NlaIV	GGNNCC	3 cut(s)	591, 947, 1035
NspV	TTCGAA	1 cut(s)	522
PfeI	GAWTC	5 cut(s)	235, 256, 583, 725, 846
PkrI	GCNGC	5 cut(s)	430, 454, 760, 777, 1071
PleI	GAGTC	4 cut(s)	274, 559, 965, 989
PpsI	GAGTC	4 cut(s)	274, 559, 965, 989
PshAI	GACNNNNGTC	1 cut(s)	473
Psp124BI	GAGCTC	1 cut(s)	1060
PspFI	CCCAGC	1 cut(s)	260
PspN4I	GGNNCC	3 cut(s)	591, 947, 1035
PspPI	GGNCC	1 cut(s)	274
PstI	CTGCAG	2 cut(s)	349, 724
PstNI	CAGNNNCTG	1 cut(s)	1075
RsaI	GTAC	1 cut(s)	591
RsaNI	GTAC	1 cut(s)	590
RseI	CAYNNNNRTG	2 cut(s)	60, 901
SacI	GAGCTC	1 cut(s)	1060
SaqAI	TTAA	1 cut(s)	699
SatI	GCNGC	5 cut(s)	429, 453, 759, 776, 1070
Sau3AI	GATC	2 cut(s)	13, 241
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	4 cut(s)	275, 559, 966, 989
ScrFI	CCNGG	3 cut(s)	277, 278, 942
SduI	GDGCHC	3 cut(s)	283, 950, 1060
SfaNI	GCATC	2 cut(s)	294, 636
SfcI	CTRYAG	3 cut(s)	345, 720, 753
SfuI	TTCGAA	1 cut(s)	522
SmaI	CCCGGG	1 cut(s)	278
SmiMI	CAYNNNNRTG	2 cut(s)	60, 901
SmlI	CTYRAG	1 cut(s)	832
SmoI	CTYRAG	1 cut(s)	832
SpeI	ACTAGT	1 cut(s)	668
SrfI	GCCCGGGC	1 cut(s)	278
Sse9I	AATT	5 cut(s)	640, 683, 702, 890, 936
SsiI	CCGC	4 cut(s)	385, 758, 860, 1004
SspMI	CTAG	4 cut(s)	173, 488, 669, 729
SstI	GAGCTC	1 cut(s)	1060
StyD4I	CCNGG	3 cut(s)	275, 276, 940
StyI	CCWWGG	2 cut(s)	410, 456
TaaI	ACNGT	2 cut(s)	509, 662
TaiI	ACGT	1 cut(s)	783
TaqI	TCGA	5 cut(s)	369, 522, 563, 849, 908
TasI	AATT	5 cut(s)	640, 683, 702, 890, 936
TauI	GCSGC	1 cut(s)	761
TfiI	GAWTC	5 cut(s)	235, 256, 583, 725, 846
Tru1I	TTAA	1 cut(s)	699
Tru9I	TTAA	1 cut(s)	699
TscAI	CASTG	2 cut(s)	349, 1099
TseI	GCWGC	4 cut(s)	428, 452, 775, 1069
TspDTI	ATGAA	3 cut(s)	17, 596, 834
TspMI	CCCGGG	1 cut(s)	276
TspRI	CASTG	2 cut(s)	349, 1099
XapI	RAATTY	3 cut(s)	640, 683, 702
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XmaI	CCCGGG	1 cut(s)	276
XspI	CTAG	4 cut(s)	173, 488, 669, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.