Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Forward (+)

15427662 .. 15429897

Gene Structure 2236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G131900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCAATGAAACAAAATGAACAAAACCACCAAGAACAACAGCAACAACAAAGCCATTCACTTTTGTTGGATGCTTTGTTGTGTGAAGAGGAGAAATGGGAGGAGGATGAAGGAGAAGTAGTGCAAGATTCTTTAGAGGAAGTGACCAGTGAGAACTACAAAAATGACATTAATGGGCACAACCCAGCCTGCCCTTCTCTGTTCTTGTTGGAACAAGATCTGTTCTGGGAAGATGAAGAGCTTGTCTCTCTCTTCTCCAAAGAAGAGCAGCAGCAGACCCATTTCATCAAACACTTGGAGGACATGGGAAACGAAGCAGCAGAGCACTCTTTGATCTCTGTGGCTCGTCGTGAAGCTGTCTTGTGGATGCTCAAAGTCAATGCCCATTATGGGTTCACTGCTCTCACTGCAATCCTAGCCATTAACTACTTTGATAGGTTCATCTCCAGCCTCCATTTTCAGAGGGACAAGCCATGGATGGTGCAGCTTGTGGCTGTCACCTGTCTCTCCTTGGCAGCCAAAGTGGAAGAAACCCAAGTGCCTCTTCTTCTGGACCTTCAAGTGGTGGACACAAAGTATGTGTTTGAGGCCAAAACGATTCAAAGAATGGAGCTTTTGGTGCTCTCAACTCTCCAATGGAAGATGCATCCAGTGACCCCACTTTCATTCCTCGACCACATCATAAGGAGGCTTGGATTGAAAACCCTTCTCCACTGGGAGTTTCTCAAGCGCTGTGAGCGTCTTCTTCTCTCTGTGGTCTTTGATTCAAGATTCATCGGTTATTTGCCTTCTGTGTTGGCCACTGCAACAATGATGCGCGTTATAGACCATGTTGAGCCTTGTAATTCCATGGAATATCAAAACCAGCTTCTGGGTGTTCTCAAAATAAGCAAGGAAAAGGTGAATGATTGTTACAGTCTCATCCTTGAGCTGTCCAAGGCCTATGATTGTGGCTACAACAATCCCCACAAGCGCAAGCATGAACAAATCCCAGGCAGCCCAAGTGGGGTAATTGATGCATATTTCAGCTATGATGAAAGCTCAAATGATTCTTGGGCAGTGGGCTCATCAATTTCTTCATCCCCGGAGCCACTCCTCAAGAGGAGCAGAGCAGCAGAGAAGGACCAACAGATGAAAATGGCTTCACTCAACAGGCTCTTTGTGGGAATTGTGGGTAGCCCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

396

Amino Acids

45.33

Weight (kDa)

5.19

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	871
AccII	CGCG	1 cut(s)	819
AcoI	YGGCCR	1 cut(s)	798
AfeI	AGCGCT	1 cut(s)	731
AfiI	CCNNNNNNNGG	4 cut(s)	390, 562, 871, 1006
AgsI	TTSAA	4 cut(s)	560, 602, 700, 768
AjnI	CCWGG	1 cut(s)	991
AjuI	GAANNNNNNNTTGG	2 cut(s)	528, 560
AluBI	AGCT	8 cut(s)	241, 356, 487, 613, 868, 931, 1029, 1041
AluI	AGCT	8 cut(s)	241, 356, 487, 613, 868, 931, 1029, 1041
Alw21I	GWGCWC	2 cut(s)	327, 624
Alw26I	GTCTC	3 cut(s)	250, 509, 923
AlwNI	CAGNNNCTG	1 cut(s)	871
Aor51HI	AGCGCT	1 cut(s)	731
AoxI	GGCC	3 cut(s)	588, 798, 939
ApeKI	GCWGC	7 cut(s)	268, 271, 317, 484, 515, 996, 1112
AseI	ATTAAT	1 cut(s)	171
AspLEI	GCGC	3 cut(s)	732, 819, 975
AspS9I	GGNCC	2 cut(s)	553, 1123
AsuC2I	CCSGG	1 cut(s)	1085
AsuHPI	GGTGA	2 cut(s)	490, 913
AvaII	GGWCC	2 cut(s)	553, 1123
BaeGI	GKGCMC	1 cut(s)	180
BalI	TGGCCA	1 cut(s)	800
BanII	GRGCYC	1 cut(s)	1067
BbsI	GAAGAC	1 cut(s)	734
Bbv12I	GWGCWC	2 cut(s)	327, 624
BbvI	GCAGC	7 cut(s)	280, 283, 329, 496, 527, 1008, 1124
BccI	CCATC	1 cut(s)	472
BciT130I	CCWGG	1 cut(s)	993
BcnI	CCSGG	1 cut(s)	1085
BcoDI	GTCTC	3 cut(s)	250, 509, 923
BfaI	CTAG	1 cut(s)	416
BfoI	RGCGCY	1 cut(s)	733
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	7 cut(s)	269, 272, 318, 485, 516, 997, 1113
BlsI	GCNGC	7 cut(s)	270, 273, 319, 486, 517, 998, 1114
Bme1390I	CCNGG	2 cut(s)	993, 1085
Bme18I	GGWCC	2 cut(s)	553, 1123
BmgT120I	GGNCC	2 cut(s)	553, 1123
BmiI	GGNNCC	1 cut(s)	1089
BmrFI	CCNGG	2 cut(s)	993, 1085
BmrI	ACTGGG	1 cut(s)	724
BmsI	GCATC	6 cut(s)	61, 357, 633, 655, 804, 1006
BmuI	ACTGGG	1 cut(s)	724
BpiI	GAAGAC	1 cut(s)	734
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
BpmI	CTGGAG	1 cut(s)	430
BpuEI	CTTGAG	3 cut(s)	710, 947, 1082
BpuMI	CCSGG	1 cut(s)	1085
BsaJI	CCNNGG	6 cut(s)	473, 510, 849, 936, 991, 1083
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	4 cut(s)	390, 562, 871, 1006
Bse1I	ACTGG	3 cut(s)	147, 650, 719
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	993
BseDI	CCNNGG	6 cut(s)	473, 510, 849, 936, 991, 1083
BseGI	GGATG	7 cut(s)	76, 112, 372, 483, 646, 921, 1079
BseLI	CCNNNNNNNGG	4 cut(s)	390, 562, 871, 1006
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	3 cut(s)	147, 650, 719
BseRI	GAGGAG	4 cut(s)	104, 116, 1085, 1117
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	7 cut(s)	280, 283, 329, 496, 527, 1008, 1124
BseYI	CCCAGC	1 cut(s)	184
BsgI	GTGCAG	1 cut(s)	503
Bsh1236I	CGCG	1 cut(s)	819
BshFI	GGCC	3 cut(s)	590, 800, 941
BsiHKAI	GWGCWC	2 cut(s)	327, 624
BsiSI	CCGG	1 cut(s)	1085
BslFI	GGGAC	1 cut(s)	479
BslI	CCNNNNNNNGG	4 cut(s)	390, 562, 871, 1006
BsmAI	GTCTC	3 cut(s)	250, 509, 923
BsmFI	GGGAC	1 cut(s)	479
BsnI	GGCC	3 cut(s)	590, 800, 941
Bsp1286I	GDGCHC	4 cut(s)	180, 327, 624, 1067
Bsp143I	GATC	2 cut(s)	217, 333
Bsp19I	CCATGG	2 cut(s)	473, 849
BspANI	GGCC	3 cut(s)	590, 800, 941
BspFNI	CGCG	1 cut(s)	819
BspLI	GGNNCC	1 cut(s)	1089
BspQI	GCTCTTC	2 cut(s)	231, 258
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	3 cut(s)	147, 650, 719
BssECI	CCNNGG	6 cut(s)	473, 510, 849, 936, 991, 1083
BssMI	GATC	2 cut(s)	217, 333
BssT1I	CCWWGG	4 cut(s)	473, 510, 849, 936
Bst2UI	CCWGG	1 cut(s)	993
Bst4CI	ACNGT	1 cut(s)	917
Bst6I	CTCTTC	5 cut(s)	81, 231, 257, 258, 549
BstC8I	GCNNGC	2 cut(s)	190, 977
BstDSI	CCRYGG	2 cut(s)	473, 849
BstF5I	GGATG	7 cut(s)	76, 112, 372, 483, 646, 921, 1079
BstFNI	CGCG	1 cut(s)	819
BstH2I	RGCGCY	1 cut(s)	733
BstHHI	GCGC	3 cut(s)	732, 819, 975
BstKTI	GATC	2 cut(s)	220, 336
BstMAI	GTCTC	3 cut(s)	250, 509, 923
BstMBI	GATC	2 cut(s)	217, 333
BstMWI	GCNNNNNNNGC	4 cut(s)	407, 416, 619, 736
BstNI	CCWGG	1 cut(s)	993
BstSCI	CCNGG	2 cut(s)	991, 1083
BstSLI	GKGCMC	1 cut(s)	180
BstUI	CGCG	1 cut(s)	819
BstV1I	GCAGC	7 cut(s)	280, 283, 329, 496, 527, 1008, 1124
BstV2I	GAAGAC	1 cut(s)	734
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	3 cut(s)	590, 800, 941
BtgI	CCRYGG	2 cut(s)	473, 849
BtsCI	GGATG	7 cut(s)	76, 112, 372, 483, 646, 921, 1079
BtsI	GCAGTG	4 cut(s)	396, 405, 801, 1065
BtsIMutI	CAGTG	7 cut(s)	154, 396, 405, 657, 712, 801, 1065
Cac8I	GCNNGC	2 cut(s)	190, 977
CaiI	CAGNNNCTG	1 cut(s)	871
CfoI	GCGC	3 cut(s)	732, 819, 975
Cfr13I	GGNCC	2 cut(s)	553, 1123
CseI	GACGC	1 cut(s)	728
CviAII	CATG	5 cut(s)	304, 474, 830, 850, 980
DpnI	GATC	2 cut(s)	219, 335
DpnII	GATC	2 cut(s)	217, 333
EaeI	YGGCCR	1 cut(s)	798
Eam1104I	CTCTTC	5 cut(s)	81, 231, 257, 258, 549
EarI	CTCTTC	5 cut(s)	81, 231, 257, 258, 549
Eco130I	CCWWGG	4 cut(s)	473, 510, 849, 936
Eco147I	AGGCCT	1 cut(s)	941
Eco24I	GRGCYC	1 cut(s)	1067
Eco47I	GGWCC	2 cut(s)	553, 1123
Eco47III	AGCGCT	1 cut(s)	731
EcoRII	CCWGG	1 cut(s)	991
EcoT14I	CCWWGG	4 cut(s)	473, 510, 849, 936
EcoT22I	ATGCAT	2 cut(s)	648, 1021
EcoT38I	GRGCYC	1 cut(s)	1067
ErhI	CCWWGG	4 cut(s)	473, 510, 849, 936
FaeI	CATG	5 cut(s)	307, 477, 833, 853, 983
FalI	AAGNNNNNCTT	2 cut(s)	528, 560
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	5 cut(s)	303, 473, 829, 849, 979
Fnu4HI	GCNGC	7 cut(s)	269, 272, 318, 485, 516, 997, 1113
FokI	GGATG	7 cut(s)	83, 119, 379, 490, 633, 908, 1066
FriOI	GRGCYC	1 cut(s)	1067
Fsp4HI	GCNGC	7 cut(s)	269, 272, 318, 485, 516, 997, 1113
FspBI	CTAG	1 cut(s)	416
GlaI	GCGC	3 cut(s)	731, 818, 974
GluI	GCNGC	7 cut(s)	269, 272, 318, 485, 516, 997, 1113
GsaI	CCCAGC	1 cut(s)	188
GsuI	CTGGAG	1 cut(s)	430
HaeII	RGCGCY	1 cut(s)	733
HaeIII	GGCC	3 cut(s)	590, 800, 941
HapII	CCGG	1 cut(s)	1085
HgaI	GACGC	1 cut(s)	728
HhaI	GCGC	3 cut(s)	732, 819, 975
Hin1II	CATG	5 cut(s)	307, 477, 833, 853, 983
Hin6I	GCGC	3 cut(s)	730, 817, 973
HinP1I	GCGC	3 cut(s)	730, 817, 973
HinfI	GANTC	5 cut(s)	128, 598, 764, 771, 1049
HpaII	CCGG	1 cut(s)	1085
HphI	GGTGA	2 cut(s)	490, 913
Hpy166II	GTNNAC	2 cut(s)	396, 568
Hpy188I	TCNGA	1 cut(s)	462
Hpy188III	TCNNGA	4 cut(s)	350, 551, 768, 1099
Hpy8I	GTNNAC	2 cut(s)	396, 568
Hpy99I	CGWCG	1 cut(s)	351
HpyAV	CCTTC	6 cut(s)	104, 204, 566, 716, 798, 1114
HpyCH4III	ACNGT	1 cut(s)	917
HpyCH4V	TGCA	6 cut(s)	124, 410, 484, 646, 806, 1019
HpyF10VI	GCNNNNNNNGC	4 cut(s)	407, 416, 619, 736
Hsp92II	CATG	5 cut(s)	307, 477, 833, 853, 983
HspAI	GCGC	3 cut(s)	730, 817, 973
Kzo9I	GATC	2 cut(s)	217, 333
LguI	GCTCTTC	2 cut(s)	231, 258
LmnI	GCTCC	3 cut(s)	610, 1087, 1104
Lsp1109I	GCAGC	7 cut(s)	280, 283, 329, 496, 527, 1008, 1124
LweI	GCATC	6 cut(s)	61, 357, 633, 655, 804, 1006
MaeI	CTAG	1 cut(s)	416
MaeIII	GTNAC	4 cut(s)	142, 496, 652, 911
MalI	GATC	2 cut(s)	219, 335
MboI	GATC	2 cut(s)	217, 333
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	4 cut(s)	180, 327, 624, 1067
MlsI	TGGCCA	1 cut(s)	800
MluCI	AATT	4 cut(s)	844, 1011, 1071, 1167
MluNI	TGGCCA	1 cut(s)	800
MmeI	TCCRAC	2 cut(s)	48, 189
Mox20I	TGGCCA	1 cut(s)	800
Mph1103I	ATGCAT	2 cut(s)	648, 1021
MscI	TGGCCA	1 cut(s)	800
MseI	TTAA	3 cut(s)	171, 423, 1186
Msp20I	TGGCCA	1 cut(s)	800
MspI	CCGG	1 cut(s)	1085
MspR9I	CCNGG	2 cut(s)	993, 1085
MvaI	CCWGG	1 cut(s)	993
MvnI	CGCG	1 cut(s)	819
MwoI	GCNNNNNNNGC	4 cut(s)	407, 416, 619, 736
NciI	CCSGG	1 cut(s)	1085
NcoI	CCATGG	2 cut(s)	473, 849
NdeII	GATC	2 cut(s)	217, 333
NlaIII	CATG	5 cut(s)	307, 477, 833, 853, 983
NlaIV	GGNNCC	1 cut(s)	1089
NmuCI	GTSAC	3 cut(s)	142, 496, 652
NsiI	ATGCAT	2 cut(s)	648, 1021
PceI	AGGCCT	1 cut(s)	941
PciSI	GCTCTTC	2 cut(s)	231, 258
PfeI	GAWTC	5 cut(s)	128, 598, 764, 771, 1049
PflMI	CCANNNNNTGG	1 cut(s)	871
PkrI	GCNGC	7 cut(s)	270, 273, 319, 486, 517, 998, 1114
PshBI	ATTAAT	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	991
PspFI	CCCAGC	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	991
PspN4I	GGNNCC	1 cut(s)	1089
PspPI	GGNCC	2 cut(s)	553, 1123
PstNI	CAGNNNCTG	1 cut(s)	871
PsuI	RGATCY	1 cut(s)	217
SapI	GCTCTTC	2 cut(s)	231, 258
SaqAI	TTAA	3 cut(s)	171, 423, 1186
SatI	GCNGC	7 cut(s)	269, 272, 318, 485, 516, 997, 1113
Sau3AI	GATC	2 cut(s)	217, 333
Sau96I	GGNCC	2 cut(s)	553, 1123
ScrFI	CCNGG	2 cut(s)	993, 1085
SduI	GDGCHC	4 cut(s)	180, 327, 624, 1067
SfaNI	GCATC	6 cut(s)	61, 357, 633, 655, 804, 1006
SinI	GGWCC	2 cut(s)	553, 1123
SmlI	CTYRAG	3 cut(s)	725, 926, 1097
SmoI	CTYRAG	3 cut(s)	725, 926, 1097
Sse9I	AATT	4 cut(s)	844, 1011, 1071, 1167
SseBI	AGGCCT	1 cut(s)	941
SspMI	CTAG	1 cut(s)	416
StuI	AGGCCT	1 cut(s)	941
StyD4I	CCNGG	2 cut(s)	991, 1083
StyI	CCWWGG	4 cut(s)	473, 510, 849, 936
TaaI	ACNGT	1 cut(s)	917
TaqI	TCGA	1 cut(s)	672
TasI	AATT	4 cut(s)	844, 1011, 1071, 1167
TfiI	GAWTC	5 cut(s)	128, 598, 764, 771, 1049
Tru1I	TTAA	3 cut(s)	171, 423, 1186
Tru9I	TTAA	3 cut(s)	171, 423, 1186
TscAI	CASTG	7 cut(s)	154, 403, 412, 657, 719, 808, 1065
TseFI	GTSAC	3 cut(s)	142, 496, 652
TseI	GCWGC	7 cut(s)	268, 271, 317, 484, 515, 996, 1112
Tsp45I	GTSAC	3 cut(s)	142, 496, 652
TspRI	CASTG	7 cut(s)	154, 403, 412, 657, 719, 808, 1065
Van91I	CCANNNNNTGG	1 cut(s)	871
VpaK11BI	GGWCC	2 cut(s)	553, 1123
VspI	ATTAAT	1 cut(s)	171
XspI	CTAG	1 cut(s)	416
Zsp2I	ATGCAT	2 cut(s)	648, 1021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.