Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Reverse (-)

4492104 .. 4494299

Gene Structure 2196 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCAATGAACCAAAATGAGCCACAAAATGAACAAAGTAATTCGTTCTTGCTGGATGATGCTTTGTTCTGTGGAGAAGAAGAGCAATGGGAGGAGGAAGATGAAGTGAGTGAGGTGTGCAATGGTGATGATGACGAAATAAACAACAATAAAGACGACATTACTAATGGAAAACCCCAAACAAACCCATCTCTGTTTCCTCTGCTTCTGTTGGAGCTAGATCTGTTTTGGGAGGATGAGGAGCTTCTTTCTCTGTTCGCCAAAGAACAGCAGCAGCCGAGAACCCATCTGAACGACGCAGTTTTGGTGGCGCGTCGCCGTGAGGCGGTAGAGTGGATGCTCAAAGTGAATGCCCATTATGGATTCACAGCTCTCACTGCAATCCTAGCCGTGAACTACTTCGACAGGTTCATCTCCAGCGTCCATTTCCAGAGAGACAAGCCATGGATGGTTCAGCTCGTCTCTGTTGCTTGCATCTCTCTGGCGGCCAAAGTGGAAGAGACCGAAGTGCCTCTTCTTCTTGACCTTCAAGTGGAGGACACCAAGTACGTTTTTGAAGCCAAAACGGTTCAAAGAATGGAGCTTTTGGTGCTCTCAACTCTTCAATGGAGGATGCACCCGGTGACCCCCGTCTCTTTCCTTGACCACATCATAAGAAGGCTTGGATTGAAGACAAGTCTTCACTGGGAGTTTCTGAAGCGCTGTGAGAGTCTGCTTATGTCTTTGGTCTTGGATTCAAGATGCATTGGTTATCTCCCTTCTGTTTTGGCCACTGCTACAATGATGAGGGTCATAGACATTGTTGAGCCTTGTAGAGCAGTGGAATACCAAACCCAACTTCTGGGGGTCCTCAAAATAAGCAAGGAGATGGTGAATGACTGTTATACCCTCATCCTTGAGATGTCAAACTATGGCTGCAAGAACAACCCCCTTAAACGCAAGCATGAGCAAATCCCAGGAAGCCCAAGTGGAGTGATTGATGCATACTTTAGTTCCGAAAGCTCAAATGACTCCTGGGCAGCGGGTTCATCGGTTTCTTCATCGCCGGAGCCGCAGTTCAAGAAGATCAAAGCAGAGGCTTCATCGCTCAACAGGCTCTTGGGCATTGTGGGTAGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

374

Amino Acids

42.34

Weight (kDa)

4.77

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	102 - 205	1.5e-26	Cyclin, N-terminal domain
Cyclin_C	PF02984	208 - 315	1.3e-15	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	841
AccII	CGCG	1 cut(s)	313
AciI	CCGC	4 cut(s)	326, 485, 1022, 1052
AcoI	YGGCCR	2 cut(s)	486, 768
AcuI	CTGAAG	1 cut(s)	716
AdeI	CACNNNGTG	1 cut(s)	622
AfaI	GTAC	1 cut(s)	548
AfeI	AGCGCT	1 cut(s)	701
AfiI	CCNNNNNNNGG	3 cut(s)	325, 532, 841
AgsI	TTSAA	7 cut(s)	530, 557, 572, 605, 670, 738, 1060
AjnI	CCWGG	2 cut(s)	955, 1013
AjuI	GAANNNNNNNTTGG	2 cut(s)	822, 854
AloI	GAACNNNNNNTCC	2 cut(s)	1040, 1072
AluBI	AGCT	6 cut(s)	217, 244, 371, 457, 583, 1002
AluI	AGCT	6 cut(s)	217, 244, 371, 457, 583, 1002
Alw21I	GWGCWC	1 cut(s)	594
Alw26I	GTCTC	4 cut(s)	429, 466, 494, 637
Aor51HI	AGCGCT	1 cut(s)	701
AoxI	GGCC	2 cut(s)	486, 768
ApeKI	GCWGC	4 cut(s)	271, 274, 915, 1019
Asp700I	GAANNNNTTC	1 cut(s)	398
AspLEI	GCGC	2 cut(s)	313, 702
AspS9I	GGNCC	1 cut(s)	847
AsuC2I	CCSGG	1 cut(s)	620
AsuHPI	GGTGA	3 cut(s)	137, 634, 883
AvaII	GGWCC	1 cut(s)	847
BalI	TGGCCA	1 cut(s)	770
BbsI	GAAGAC	2 cut(s)	671, 677
Bbv12I	GWGCWC	1 cut(s)	594
BbvI	GCAGC	4 cut(s)	283, 286, 902, 1031
BccI	CCATC	4 cut(s)	196, 294, 442, 862
BceAI	ACGGC	2 cut(s)	303, 374
BciT130I	CCWGG	2 cut(s)	957, 1015
BcnI	CCSGG	1 cut(s)	620
BcoDI	GTCTC	4 cut(s)	429, 466, 494, 637
BfaI	CTAG	2 cut(s)	218, 386
BfoI	RGCGCY	1 cut(s)	703
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	6 cut(s)	272, 275, 486, 916, 1020, 1052
BlsI	GCNGC	6 cut(s)	273, 276, 487, 917, 1021, 1053
Bme1390I	CCNGG	3 cut(s)	620, 957, 1015
Bme18I	GGWCC	1 cut(s)	847
BmgT120I	GGNCC	1 cut(s)	847
BmiI	GGNNCC	2 cut(s)	848, 1050
BmrFI	CCNGG	3 cut(s)	620, 957, 1015
BmrI	ACTGGG	1 cut(s)	694
BmsI	GCATC	6 cut(s)	49, 327, 483, 603, 731, 970
BmuI	ACTGGG	1 cut(s)	694
BoxI	GACNNNNGTC	1 cut(s)	629
BpiI	GAAGAC	2 cut(s)	671, 677
BpmI	CTGGAG	1 cut(s)	400
BpuEI	CTTGAG	1 cut(s)	917
BpuMI	CCSGG	1 cut(s)	620
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	3 cut(s)	443, 955, 1014
BsaXI	ACNNNNNCTCC	2 cut(s)	1040, 1070
Bsc4I	CCNNNNNNNGG	3 cut(s)	325, 532, 841
Bse1I	ACTGG	1 cut(s)	689
Bse3DI	GCAATG	3 cut(s)	12, 92, 127
BseBI	CCWGG	2 cut(s)	957, 1015
BseDI	CCNNGG	3 cut(s)	443, 955, 1014
BseGI	GGATG	6 cut(s)	61, 241, 342, 453, 618, 891
BseLI	CCNNNNNNNGG	3 cut(s)	325, 532, 841
BseMI	GCAATG	3 cut(s)	12, 92, 127
BseNI	ACTGG	1 cut(s)	689
BseRI	GAGGAG	2 cut(s)	107, 254
BseXI	GCAGC	4 cut(s)	283, 286, 902, 1031
Bsh1236I	CGCG	1 cut(s)	313
BshFI	GGCC	2 cut(s)	488, 770
BsiHKAI	GWGCWC	1 cut(s)	594
BsiSI	CCGG	2 cut(s)	620, 1046
BslFI	GGGAC	1 cut(s)	1101
BslI	CCNNNNNNNGG	3 cut(s)	325, 532, 841
BsmAI	GTCTC	4 cut(s)	429, 466, 494, 637
BsmBI	CGTCTC	2 cut(s)	466, 637
BsmFI	GGGAC	1 cut(s)	1101
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	2 cut(s)	488, 770
Bso31I	GGTCTC	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	594
Bsp143I	GATC	2 cut(s)	220, 1065
Bsp19I	CCATGG	1 cut(s)	443
BspACI	CCGC	4 cut(s)	326, 485, 1022, 1052
BspANI	GGCC	2 cut(s)	488, 770
BspFNI	CGCG	1 cut(s)	313
BspLI	GGNNCC	2 cut(s)	848, 1050
BspQI	GCTCTTC	1 cut(s)	75
BspTNI	GGTCTC	1 cut(s)	494
BsrDI	GCAATG	3 cut(s)	12, 92, 127
BsrI	ACTGG	1 cut(s)	689
BssECI	CCNNGG	3 cut(s)	443, 955, 1014
BssMI	GATC	2 cut(s)	220, 1065
BssT1I	CCWWGG	1 cut(s)	443
Bst2UI	CCWGG	2 cut(s)	957, 1015
Bst4CI	ACNGT	2 cut(s)	568, 881
Bst6I	CTCTTC	4 cut(s)	75, 492, 519, 606
BstC8I	GCNNGC	2 cut(s)	472, 941
BstDSI	CCRYGG	1 cut(s)	443
BstEII	GGTNACC	1 cut(s)	622
BstF5I	GGATG	6 cut(s)	61, 241, 342, 453, 618, 891
BstFNI	CGCG	1 cut(s)	313
BstH2I	RGCGCY	1 cut(s)	703
BstHHI	GCGC	2 cut(s)	313, 702
BstKTI	GATC	2 cut(s)	223, 1068
BstMAI	GTCTC	4 cut(s)	429, 466, 494, 637
BstMBI	GATC	2 cut(s)	220, 1065
BstMWI	GCNNNNNNNGC	5 cut(s)	377, 386, 589, 1051, 1093
BstNI	CCWGG	2 cut(s)	957, 1015
BstPAI	GACNNNNGTC	1 cut(s)	629
BstPI	GGTNACC	1 cut(s)	622
BstSCI	CCNGG	3 cut(s)	618, 955, 1013
BstUI	CGCG	1 cut(s)	313
BstV1I	GCAGC	4 cut(s)	283, 286, 902, 1031
BstV2I	GAAGAC	2 cut(s)	671, 677
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	488, 770
BtgI	CCRYGG	1 cut(s)	443
BtgZI	GCGATG	2 cut(s)	1026, 1068
BtsCI	GGATG	6 cut(s)	61, 241, 342, 453, 618, 891
BtsI	GCAGTG	3 cut(s)	375, 771, 825
BtsIMutI	CAGTG	4 cut(s)	375, 682, 771, 825
Cac8I	GCNNGC	2 cut(s)	472, 941
CfoI	GCGC	2 cut(s)	313, 702
Cfr13I	GGNCC	1 cut(s)	847
CseI	GACGC	3 cut(s)	302, 305, 409
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	2 cut(s)	444, 944
CviQI	GTAC	1 cut(s)	547
DpnI	GATC	2 cut(s)	222, 1067
DpnII	GATC	2 cut(s)	220, 1065
DraIII	CACNNNGTG	1 cut(s)	622
EaeI	YGGCCR	2 cut(s)	486, 768
Eam1104I	CTCTTC	4 cut(s)	75, 492, 519, 606
EarI	CTCTTC	4 cut(s)	75, 492, 519, 606
Eco130I	CCWWGG	1 cut(s)	443
Eco31I	GGTCTC	1 cut(s)	494
Eco47I	GGWCC	1 cut(s)	847
Eco47III	AGCGCT	1 cut(s)	701
Eco57I	CTGAAG	1 cut(s)	716
Eco91I	GGTNACC	1 cut(s)	622
EcoO109I	RGGNCCY	1 cut(s)	847
EcoO65I	GGTNACC	1 cut(s)	622
EcoRII	CCWGG	2 cut(s)	955, 1013
EcoT14I	CCWWGG	1 cut(s)	443
EcoT22I	ATGCAT	2 cut(s)	746, 985
ErhI	CCWWGG	1 cut(s)	443
Esp3I	CGTCTC	2 cut(s)	466, 637
FaeI	CATG	2 cut(s)	447, 947
FaiI	YATR	9 cut(s)	360, 445, 653, 719, 794, 885, 912, 945, 985
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FaqI	GGGAC	1 cut(s)	1101
FatI	CATG	2 cut(s)	443, 943
FauI	CCCGC	1 cut(s)	1015
Fnu4HI	GCNGC	6 cut(s)	272, 275, 486, 916, 1020, 1052
FokI	GGATG	6 cut(s)	68, 248, 349, 460, 625, 878
Fsp4HI	GCNGC	6 cut(s)	272, 275, 486, 916, 1020, 1052
FspBI	CTAG	2 cut(s)	218, 386
GlaI	GCGC	2 cut(s)	312, 701
GluI	GCNGC	6 cut(s)	272, 275, 486, 916, 1020, 1052
GsuI	CTGGAG	1 cut(s)	400
HaeII	RGCGCY	1 cut(s)	703
HaeIII	GGCC	2 cut(s)	488, 770
HapII	CCGG	2 cut(s)	620, 1046
HgaI	GACGC	3 cut(s)	302, 305, 409
HhaI	GCGC	2 cut(s)	313, 702
Hin1II	CATG	2 cut(s)	447, 947
Hin6I	GCGC	2 cut(s)	311, 700
HinP1I	GCGC	2 cut(s)	311, 700
HinfI	GANTC	4 cut(s)	363, 709, 734, 1010
HpaII	CCGG	2 cut(s)	620, 1046
HphI	GGTGA	3 cut(s)	137, 634, 883
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	3 cut(s)	291, 696, 997
Hpy188III	TCNNGA	4 cut(s)	430, 521, 738, 1060
Hpy8I	GTNNAC	1 cut(s)	394
Hpy99I	CGWCG	2 cut(s)	299, 318
HpyAV	CCTTC	3 cut(s)	536, 651, 768
HpyCH4III	ACNGT	2 cut(s)	568, 881
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	7 cut(s)	120, 380, 474, 616, 744, 918, 983
HpyF10VI	GCNNNNNNNGC	5 cut(s)	377, 386, 589, 1051, 1093
HpySE526I	ACGT	1 cut(s)	549
Hsp92II	CATG	2 cut(s)	447, 947
HspAI	GCGC	2 cut(s)	311, 700
Kzo9I	GATC	2 cut(s)	220, 1065
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	4 cut(s)	214, 241, 580, 1048
Lsp1109I	GCAGC	4 cut(s)	283, 286, 902, 1031
LweI	GCATC	6 cut(s)	49, 327, 483, 603, 731, 970
MaeI	CTAG	2 cut(s)	218, 386
MaeII	ACGT	1 cut(s)	549
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	2 cut(s)	222, 1067
MboI	GATC	2 cut(s)	220, 1065
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	594
MlsI	TGGCCA	1 cut(s)	770
MluCI	AATT	1 cut(s)	40
MluNI	TGGCCA	1 cut(s)	770
MlyI	GAGTC	2 cut(s)	718, 1004
MmeI	TCCRAC	1 cut(s)	192
Mox20I	TGGCCA	1 cut(s)	770
Mph1103I	ATGCAT	2 cut(s)	746, 985
MroXI	GAANNNNTTC	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	770
MseI	TTAA	1 cut(s)	933
Msp20I	TGGCCA	1 cut(s)	770
MspA1I	CMGCKG	1 cut(s)	1022
MspI	CCGG	2 cut(s)	620, 1046
MspR9I	CCNGG	3 cut(s)	620, 957, 1015
Mva1269I	GAATGC	1 cut(s)	355
MvaI	CCWGG	2 cut(s)	957, 1015
MvnI	CGCG	1 cut(s)	313
MwoI	GCNNNNNNNGC	5 cut(s)	377, 386, 589, 1051, 1093
NciI	CCSGG	1 cut(s)	620
NcoI	CCATGG	1 cut(s)	443
NdeII	GATC	2 cut(s)	220, 1065
NlaIII	CATG	2 cut(s)	447, 947
NlaIV	GGNNCC	2 cut(s)	848, 1050
NmeAIII	GCCGAG	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	622
NsiI	ATGCAT	2 cut(s)	746, 985
PciSI	GCTCTTC	1 cut(s)	75
PctI	GAATGC	1 cut(s)	355
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	2 cut(s)	363, 734
PflMI	CCANNNNNTGG	1 cut(s)	841
PkrI	GCNGC	6 cut(s)	273, 276, 487, 917, 1021, 1053
PleI	GAGTC	2 cut(s)	717, 1004
PpsI	GAGTC	2 cut(s)	717, 1004
PpuMI	RGGWCCY	1 cut(s)	847
PshAI	GACNNNNGTC	1 cut(s)	629
Psp5II	RGGWCCY	1 cut(s)	847
Psp6I	CCWGG	2 cut(s)	955, 1013
PspEI	GGTNACC	1 cut(s)	622
PspGI	CCWGG	2 cut(s)	955, 1013
PspN4I	GGNNCC	2 cut(s)	848, 1050
PspPI	GGNCC	1 cut(s)	847
PspPPI	RGGWCCY	1 cut(s)	847
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	933
SatI	GCNGC	6 cut(s)	272, 275, 486, 916, 1020, 1052
Sau3AI	GATC	2 cut(s)	220, 1065
Sau96I	GGNCC	1 cut(s)	847
SchI	GAGTC	2 cut(s)	718, 1004
ScrFI	CCNGG	3 cut(s)	620, 957, 1015
SduI	GDGCHC	1 cut(s)	594
SfaNI	GCATC	6 cut(s)	49, 327, 483, 603, 731, 970
SinI	GGWCC	1 cut(s)	847
SmlI	CTYRAG	1 cut(s)	896
SmoI	CTYRAG	1 cut(s)	896
Sse9I	AATT	1 cut(s)	40
SsiI	CCGC	4 cut(s)	326, 485, 1022, 1052
SspMI	CTAG	2 cut(s)	218, 386
StyD4I	CCNGG	3 cut(s)	618, 955, 1013
StyI	CCWWGG	1 cut(s)	443
TaaI	ACNGT	2 cut(s)	568, 881
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	1 cut(s)	402
TaqII	GACCGA	1 cut(s)	518
TasI	AATT	1 cut(s)	40
TauI	GCSGC	2 cut(s)	488, 1054
TfiI	GAWTC	2 cut(s)	363, 734
Tru1I	TTAA	1 cut(s)	933
Tru9I	TTAA	1 cut(s)	933
TscAI	CASTG	4 cut(s)	382, 689, 778, 825
TseFI	GTSAC	1 cut(s)	622
TseI	GCWGC	4 cut(s)	271, 274, 915, 1019
Tsp45I	GTSAC	1 cut(s)	622
TspDTI	ATGAA	7 cut(s)	23, 45, 117, 400, 1017, 1029, 1071
TspRI	CASTG	4 cut(s)	382, 689, 778, 825
Van91I	CCANNNNNTGG	1 cut(s)	841
VpaK11BI	GGWCC	1 cut(s)	847
XmnI	GAANNNNTTC	1 cut(s)	398
XspI	CTAG	2 cut(s)	218, 386
Zsp2I	ATGCAT	2 cut(s)	746, 985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.