Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Forward (+)

2999631 .. 3001100

Gene Structure 1470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010618

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGATCAGCCATTTCTCTTGGACGCTCTGTTCTGCTCGGAACAACATTTGGATGAGGAAAAGCAGGAAGCTACAGTGTTGGACTATTCAGAGGAATTTGTTGAAGATAGTTCTTTTTATAGCAACAACTCTTCGTCTTGTAAACAACAACCAATAAAGTCCCCAATCTTGCTAGAGCAAGACCTGTTCTGGGACGATGAGGAACTCACCTCTCTGTTGTCGAAAGAGAAACTGAATCAAGATCGGAAAATCCTGAATCCCAACTCGTTTTTGGCCGGGGCACGTAAGGAGGCTGTGGATTGGATGCTGAGGGTCAATGCTCACTACTCTTTCTCTGCTCTGACTGCGGTTCTGGCCGTCGATTACCTGGATAGGTTTTTCTTCAGCTTCCAATTTCAGACCGAGAAGCCATGGATGACACAGCTCGCTGCCGTGGCTTGTATCTCCCTTGCTGCAAAAGTGGAGGAGACCCAAGTCCCCTTATTACTAGACTTCCAAGTTGAGGACAGTAAGTATGTGTTCGAAGCTAAAACGATTAACAGAATGGAGATTTTGGTTCTCTCAACTCTTGATTGGAAGATGAATCCGGTGACCCCAATTTCGTTTCTTGATTACATGACAAGGAGGTTTGGTTTGAAAGACCATCTCTGCTGGGAATTCCTCAAGAGATGTGAGCTCATCCTTGTCAATCTCATCTCAGATTCTAGGTTCTTGTCTTTCCTTCCATCTGTAGTGGCTACTGCCACAATGCTGCACGTTGTCAATAACATTGAGCCTTGTCTTCAAGTTGAGTATGAAAACCAGCTCTTGACTATTCTCGGAATCGACAAGGGTTTGGCGGATGATTGCTCTAAGCTCATTATGGAACTGTCATCATCGTGGTCGAGAAACAAGCGCAAGTTTGGTCACTCAATTCCTGGGAGCCCAAATGGAGTCATTGACATATCATTCAGCTCGGACAGCTCAAATGACTCATGGGCCGTGGCCTCATCAGTCTCGTCCTCACCGGAACCTCTGTCCAAGAAAAGCAGGGCTCTGGAAAAGCAGCTTCTGGAGAAGCTCAACCAAACAGCAAATGCAGCAGCAGATATTCTCAGCCTTCCACGCCTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

372

Amino Acids

42.07

Weight (kDa)

4.79

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	83 - 195	1.8e-25	Cyclin, N-terminal domain
Cyclin_C	PF02984	197 - 297	4.3e-13	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	347, 839
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	273, 354
AcsI	RAATTY	2 cut(s)	95, 656
AcuI	CTGAAG	1 cut(s)	367
AfiI	CCNNNNNNNGG	2 cut(s)	190, 502
AgsI	TTSAA	3 cut(s)	104, 637, 785
AjnI	CCWGG	2 cut(s)	366, 916
AloI	GAACNNNNNNTCC	2 cut(s)	14, 46
Alw21I	GWGCWC	1 cut(s)	678
Alw26I	GTCTC	2 cut(s)	461, 1000
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	1051
AoxI	GGCC	4 cut(s)	273, 354, 978, 984
ApeKI	GCWGC	6 cut(s)	428, 452, 751, 1045, 1079, 1082
ApoI	RAATTY	2 cut(s)	95, 656
ArsI	GACNNNNNNTTYG	2 cut(s)	583, 615
AspLEI	GCGC	1 cut(s)	897
AspS9I	GGNCC	1 cut(s)	978
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	3 cut(s)	199, 601, 996
AsuII	TTCGAA	1 cut(s)	522
BaeGI	GKGCMC	1 cut(s)	283
BanII	GRGCYC	3 cut(s)	678, 926, 1036
BbsI	GAAGAC	1 cut(s)	773
Bbv12I	GWGCWC	1 cut(s)	678
BbvCI	CCTCAGC	1 cut(s)	308
BbvI	GCAGC	6 cut(s)	415, 439, 738, 1057, 1091, 1094
BccI	CCATC	2 cut(s)	651, 733
BceAI	ACGGC	3 cut(s)	341, 416, 965
BciT130I	CCWGG	2 cut(s)	368, 918
BcnI	CCSGG	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	461, 1000
BfaI	CTAG	3 cut(s)	173, 488, 705
BfmI	CTRYAG	2 cut(s)	72, 729
BisI	GCNGC	6 cut(s)	429, 453, 752, 1046, 1080, 1083
BlsI	GCNGC	6 cut(s)	430, 454, 753, 1047, 1081, 1084
Bme1390I	CCNGG	3 cut(s)	277, 368, 918
BmgT120I	GGNCC	1 cut(s)	978
BmiI	GGNNCC	2 cut(s)	923, 1011
BmrFI	CCNGG	3 cut(s)	277, 368, 918
BmsI	GCATC	1 cut(s)	294
BoxI	GACNNNNGTC	1 cut(s)	473
BpiI	GAAGAC	1 cut(s)	773
BpmI	CTGGAG	1 cut(s)	1073
Bpu10I	CCTNAGC	1 cut(s)	308
Bpu14I	TTCGAA	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	647
BpuMI	CCSGG	1 cut(s)	277
BsaAI	YACGTR	1 cut(s)	284
BsaI	GGTCTC	1 cut(s)	461
BsaJI	CCNNGG	5 cut(s)	276, 410, 432, 917, 981
BsaWI	WCCGGW	2 cut(s)	586, 1006
BsaXI	ACNNNNNCTCC	2 cut(s)	616, 646
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 502
BseBI	CCWGG	2 cut(s)	368, 918
BseDI	CCNNGG	5 cut(s)	276, 410, 432, 917, 981
BseGI	GGATG	5 cut(s)	58, 309, 420, 678, 847
BseLI	CCNNNNNNNGG	2 cut(s)	190, 502
BseMII	CTCAG	3 cut(s)	299, 711, 1108
BseRI	GAGGAG	1 cut(s)	479
BseSI	GKGCMC	1 cut(s)	283
BseXI	GCAGC	6 cut(s)	415, 439, 738, 1057, 1091, 1094
BseYI	CCCAGC	1 cut(s)	651
BsgI	GTGCAG	1 cut(s)	737
BshFI	GGCC	4 cut(s)	275, 356, 980, 986
BsiHKAI	GWGCWC	1 cut(s)	678
BsiSI	CCGG	3 cut(s)	276, 587, 1007
BslFI	GGGAC	3 cut(s)	145, 206, 461
BslI	CCNNNNNNNGG	2 cut(s)	190, 502
BsmAI	GTCTC	2 cut(s)	461, 1000
BsmFI	GGGAC	3 cut(s)	145, 206, 461
BsnI	GGCC	4 cut(s)	275, 356, 980, 986
Bso31I	GGTCTC	1 cut(s)	461
Bsp119I	TTCGAA	1 cut(s)	522
Bsp1286I	GDGCHC	4 cut(s)	283, 678, 926, 1036
Bsp143I	GATC	2 cut(s)	4, 241
Bsp19I	CCATGG	1 cut(s)	410
BspACI	CCGC	2 cut(s)	347, 839
BspANI	GGCC	4 cut(s)	275, 356, 980, 986
BspCNI	CTCAG	3 cut(s)	300, 710, 1107
BspLI	GGNNCC	2 cut(s)	923, 1011
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	522
BspTNI	GGTCTC	1 cut(s)	461
BssECI	CCNNGG	5 cut(s)	276, 410, 432, 917, 981
BssMI	GATC	2 cut(s)	4, 241
BssT1I	CCWWGG	1 cut(s)	410
Bst2UI	CCWGG	2 cut(s)	368, 918
Bst4CI	ACNGT	3 cut(s)	76, 509, 870
Bst6I	CTCTTC	1 cut(s)	136
BstBAI	YACGTR	1 cut(s)	284
BstBI	TTCGAA	1 cut(s)	522
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	4 cut(s)	308, 697, 852, 1094
BstDSI	CCRYGG	3 cut(s)	410, 432, 981
BstEII	GGTNACC	1 cut(s)	589
BstF5I	GGATG	5 cut(s)	58, 309, 420, 678, 847
BstHHI	GCGC	1 cut(s)	897
BstKTI	GATC	2 cut(s)	7, 244
BstMAI	GTCTC	2 cut(s)	461, 1000
BstMBI	GATC	2 cut(s)	4, 241
BstMWI	GCNNNNNNNGC	6 cut(s)	344, 353, 434, 960, 1079, 1104
BstNI	CCWGG	2 cut(s)	368, 918
BstPAI	GACNNNNGTC	1 cut(s)	473
BstPI	GGTNACC	1 cut(s)	589
BstSCI	CCNGG	3 cut(s)	275, 366, 916
BstSFI	CTRYAG	2 cut(s)	72, 729
BstSLI	GKGCMC	1 cut(s)	283
BstV1I	GCAGC	6 cut(s)	415, 439, 738, 1057, 1091, 1094
BstV2I	GAAGAC	1 cut(s)	773
BsuRI	GGCC	4 cut(s)	275, 356, 980, 986
BtgI	CCRYGG	3 cut(s)	410, 432, 981
BtsCI	GGATG	5 cut(s)	58, 309, 420, 678, 847
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	426
CaiI	CAGNNNCTG	1 cut(s)	1051
CfoI	GCGC	1 cut(s)	897
Cfr13I	GGNCC	1 cut(s)	978
CseI	GACGC	1 cut(s)	32
CviAII	CATG	3 cut(s)	411, 616, 975
DdeI	CTNAG	4 cut(s)	308, 697, 852, 1094
DpnI	GATC	2 cut(s)	6, 243
DpnII	GATC	2 cut(s)	4, 241
EaeI	YGGCCR	2 cut(s)	273, 354
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
EciI	GGCGGA	1 cut(s)	854
Ecl136II	GAGCTC	1 cut(s)	676
Eco130I	CCWWGG	1 cut(s)	410
Eco24I	GRGCYC	3 cut(s)	678, 926, 1036
Eco31I	GGTCTC	1 cut(s)	461
Eco53kI	GAGCTC	1 cut(s)	676
Eco57I	CTGAAG	1 cut(s)	367
Eco91I	GGTNACC	1 cut(s)	589
EcoICRI	GAGCTC	1 cut(s)	676
EcoO65I	GGTNACC	1 cut(s)	589
EcoRI	GAATTC	1 cut(s)	656
EcoRII	CCWGG	2 cut(s)	366, 916
EcoT14I	CCWWGG	1 cut(s)	410
EcoT38I	GRGCYC	3 cut(s)	678, 926, 1036
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	3 cut(s)	414, 619, 978
FaiI	YATR	8 cut(s)	120, 412, 516, 617, 795, 863, 944, 976
FaqI	GGGAC	3 cut(s)	145, 206, 461
FatI	CATG	3 cut(s)	410, 615, 974
Fnu4HI	GCNGC	6 cut(s)	429, 453, 752, 1046, 1080, 1083
FokI	GGATG	5 cut(s)	65, 316, 427, 665, 854
FriOI	GRGCYC	3 cut(s)	678, 926, 1036
Fsp4HI	GCNGC	6 cut(s)	429, 453, 752, 1046, 1080, 1083
FspBI	CTAG	3 cut(s)	173, 488, 705
GlaI	GCGC	1 cut(s)	896
GluI	GCNGC	6 cut(s)	429, 453, 752, 1046, 1080, 1083
GsaI	CCCAGC	1 cut(s)	655
GsuI	CTGGAG	1 cut(s)	1073
HaeIII	GGCC	4 cut(s)	275, 356, 980, 986
HapII	CCGG	3 cut(s)	276, 587, 1007
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	897
Hin1II	CATG	3 cut(s)	414, 619, 978
Hin6I	GCGC	1 cut(s)	895
HinP1I	GCGC	1 cut(s)	895
HinfI	GANTC	7 cut(s)	235, 256, 583, 701, 822, 933, 971
HpaII	CCGG	3 cut(s)	276, 587, 1007
HphI	GGTGA	3 cut(s)	199, 601, 996
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	8 cut(s)	40, 91, 246, 342, 399, 700, 821, 958
Hpy188III	TCNNGA	9 cut(s)	239, 253, 569, 608, 664, 808, 885, 1037, 1052
Hpy8I	GTNNAC	1 cut(s)	143
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	2 cut(s)	731, 1109
HpyCH4III	ACNGT	3 cut(s)	76, 509, 870
HpyCH4IV	ACGT	2 cut(s)	283, 756
HpyCH4V	TGCA	3 cut(s)	455, 754, 1079
HpyF10VI	GCNNNNNNNGC	6 cut(s)	344, 353, 434, 960, 1079, 1104
HpyF3I	CTNAG	4 cut(s)	308, 697, 852, 1094
HpySE526I	ACGT	2 cut(s)	283, 756
Hsp92II	CATG	3 cut(s)	414, 619, 978
HspAI	GCGC	1 cut(s)	895
Kzo9I	GATC	2 cut(s)	4, 241
LmnI	GCTCC	1 cut(s)	921
Lsp1109I	GCAGC	6 cut(s)	415, 439, 738, 1057, 1091, 1094
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	3 cut(s)	173, 488, 705
MaeII	ACGT	2 cut(s)	283, 756
MaeIII	GTNAC	2 cut(s)	589, 905
MalI	GATC	2 cut(s)	6, 243
MboI	GATC	2 cut(s)	4, 241
MboII	GAAGA	5 cut(s)	116, 123, 373, 589, 773
MhlI	GDGCHC	4 cut(s)	283, 678, 926, 1036
MluCI	AATT	5 cut(s)	95, 392, 597, 656, 912
MlyI	GAGTC	2 cut(s)	942, 965
MmeI	TCCRAC	1 cut(s)	60
MseI	TTAA	1 cut(s)	537
MslI	CAYNNNNRTG	2 cut(s)	51, 877
MspI	CCGG	3 cut(s)	276, 587, 1007
MspR9I	CCNGG	3 cut(s)	277, 368, 918
MvaI	CCWGG	2 cut(s)	368, 918
MwoI	GCNNNNNNNGC	6 cut(s)	344, 353, 434, 960, 1079, 1104
NciI	CCSGG	1 cut(s)	277
NcoI	CCATGG	1 cut(s)	410
NdeII	GATC	2 cut(s)	4, 241
NlaIII	CATG	3 cut(s)	414, 619, 978
NlaIV	GGNNCC	2 cut(s)	923, 1011
NmuCI	GTSAC	2 cut(s)	589, 905
NspV	TTCGAA	1 cut(s)	522
PfeI	GAWTC	5 cut(s)	235, 256, 583, 701, 822
PkrI	GCNGC	6 cut(s)	430, 454, 753, 1047, 1081, 1084
PleI	GAGTC	2 cut(s)	941, 965
PpsI	GAGTC	2 cut(s)	941, 965
Ppu21I	YACGTR	1 cut(s)	284
PshAI	GACNNNNGTC	1 cut(s)	473
Psp124BI	GAGCTC	1 cut(s)	678
Psp6I	CCWGG	2 cut(s)	366, 916
PspEI	GGTNACC	1 cut(s)	589
PspFI	CCCAGC	1 cut(s)	651
PspGI	CCWGG	2 cut(s)	366, 916
PspN4I	GGNNCC	2 cut(s)	923, 1011
PspPI	GGNCC	1 cut(s)	978
PstNI	CAGNNNCTG	1 cut(s)	1051
RseI	CAYNNNNRTG	2 cut(s)	51, 877
SacI	GAGCTC	1 cut(s)	678
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	6 cut(s)	429, 453, 752, 1046, 1080, 1083
Sau3AI	GATC	2 cut(s)	4, 241
Sau96I	GGNCC	1 cut(s)	978
SchI	GAGTC	2 cut(s)	942, 965
ScrFI	CCNGG	3 cut(s)	277, 368, 918
SduI	GDGCHC	4 cut(s)	283, 678, 926, 1036
SfaNI	GCATC	1 cut(s)	294
SfcI	CTRYAG	2 cut(s)	72, 729
SfuI	TTCGAA	1 cut(s)	522
SmiMI	CAYNNNNRTG	2 cut(s)	51, 877
SmlI	CTYRAG	1 cut(s)	662
SmoI	CTYRAG	1 cut(s)	662
Sse9I	AATT	5 cut(s)	95, 392, 597, 656, 912
SsiI	CCGC	2 cut(s)	347, 839
SspMI	CTAG	3 cut(s)	173, 488, 705
SstI	GAGCTC	1 cut(s)	678
StyD4I	CCNGG	3 cut(s)	275, 366, 916
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	3 cut(s)	76, 509, 870
TaiI	ACGT	2 cut(s)	286, 759
TaqI	TCGA	5 cut(s)	221, 360, 522, 825, 884
TaqII	GACCGA	1 cut(s)	416
TasI	AATT	5 cut(s)	95, 392, 597, 656, 912
TfiI	GAWTC	5 cut(s)	235, 256, 583, 701, 822
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	2 cut(s)	589, 905
TseI	GCWGC	6 cut(s)	428, 452, 751, 1045, 1079, 1082
Tsp45I	GTSAC	2 cut(s)	589, 905
TspDTI	ATGAA	2 cut(s)	596, 810
TspRI	CASTG	1 cut(s)	81
XapI	RAATTY	2 cut(s)	95, 656
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XspI	CTAG	3 cut(s)	173, 488, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.