pycom05g08680

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
11387234 .. 11388922
1689 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g08680.3

Sequence Viewer

Length: 1167 bp
ATGGCAATGAATCACGACCAACACCAAAACCCACAAAGCCATTCACTTTTGCTGGATGCTTTGCTCTGTGAGGAGGACAAGTGGGAGGAGGACGATGGAGAGGTGGTGGAACAAGAAGTGAGTAGTGGTGAGAACTACAACAATGGCGTCAGTGGGAAAAACCCAAACTGCCCTTCTCTGTTTCCCATGCTCCTGTTGGAACAAGATCTGTTCTGGGAGGATGATGAGCTTGTTTCTCTCTTTTCCAAGGAGGAGCAGCAACAGACGCATTTCGTCAAACACATGGAGGGCATGGGAACAGAGGACTCTTTGATCTCCGCGGCTCGCCGTGATGCCGTGCTGTGGATGCTCAAAGTGAACGCCCATTACGGGTTCACAGCCCTCACTGCAATCCTAGCCGTTAACTACTTCGATCGGTTCATCTCAAGCCACCATTTCCAGAGAGACAAGCCGTGGATGGTCCAGCTTGTGGCTGTCACTTGCCTCTCTCTGGCTGCCAAAGTGGAAGAAACCGAAGTTCCTCTGCTTTTAGACCTTCAAGTGGAGGACACGAAGTACTTTTTCGAGGCGAAAACGATTCAGAGAATGGAGATTTTGGTGCTCTCAGCTCTCCACTGGCGGATGCATCCAGTCACGCCACTTTCGTTCCTCGACCACATCATAAGAAGGCTCGGATTGAAAACCCACCTCCATTGGGAGTTCCTCAAGCGCTGCGAGCGTCTCCTTCTCTCCGTAGTCTTCGATTCGAGATTTGTCCGTTATTTGCCTTCTGTTTTGGCCACTGCAACAATGATGCGCGTTATAGACCAGGTCGAGCCTTGGAATGCCATTGAATACCAGAACCAGCTTCTTGGTGTTCTCAAAATAAGCAAGGAAAAAGTGAACGACTGTTACAGTCTGATAATCGACTATGATTACGCCTGCAGCAACAACAAAAACAGCACCAACAAACGCAAGCATGATCAAATCCCGGGCAGCCCAAGTGCGGTGATTGATGCATATTTCAGCCATGAAAGCTCAAATGATTCGTGGCCAGTGGGATCATCAGTTTCTTCATCCCCACAAGCACTTTTCAAGAGGACCAGAAAAGCAGAAGCAGAAGAGAAAGAGACGAAATTGGCCTCACTCAGCAGGCTCTTTGTGGGCATTGTTGGTAGCCCACCTTAA

Protein Analysis

389

Amino Acids

44.4

Weight (kDa)

5.4

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 469
AccII CGCG 2 cut(s) 320, 798
AciI CCGC 4 cut(s) 318, 320, 619, 986
AclWI GGATC 1 cut(s) 1048
AcoI YGGCCR 2 cut(s) 777, 1031
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 1 cut(s) 557
AfeI AGCGCT 1 cut(s) 710
AfiI CCNNNNNNNGG 7 cut(s) 342, 369, 469, 490, 541, 694, 985
AgsI TTSAA 4 cut(s) 539, 679, 833, 1075
AjnI CCWGG 1 cut(s) 807
AjuI GAANNNNNNNTTGG 2 cut(s) 157, 189
AluBI AGCT 5 cut(s) 229, 466, 608, 847, 1017
AluI AGCT 5 cut(s) 229, 466, 608, 847, 1017
Alw21I GWGCWC 1 cut(s) 603
Alw26I GTCTC 3 cut(s) 438, 725, 1103
AlwI GGATC 1 cut(s) 1048
Ama87I CYCGRG 1 cut(s) 970
Aor51HI AGCGCT 1 cut(s) 710
AoxI GGCC 3 cut(s) 777, 1031, 1119
ApeKI GCWGC 5 cut(s) 256, 494, 711, 924, 975
AspLEI GCGC 2 cut(s) 711, 798
AspS9I GGNCC 2 cut(s) 460, 1080
AsuC2I CCSGG 2 cut(s) 971, 972
AsuHPI GGTGA 2 cut(s) 140, 1000
AvaI CYCGRG 1 cut(s) 970
AvaII GGWCC 2 cut(s) 460, 1080
BalI TGGCCA 2 cut(s) 779, 1033
BbsI GAAGAC 1 cut(s) 730
Bbv12I GWGCWC 1 cut(s) 603
BbvI GCAGC 5 cut(s) 268, 481, 698, 936, 987
BccI CCATC 2 cut(s) 89, 451
BceAI ACGGC 4 cut(s) 312, 320, 383, 436
BciT130I CCWGG 1 cut(s) 809
BclI TGATCA 1 cut(s) 961
BcnI CCSGG 2 cut(s) 971, 972
BcoDI GTCTC 3 cut(s) 438, 725, 1103
BfaI CTAG 1 cut(s) 395
BfmI CTRYAG 1 cut(s) 922
BfoI RGCGCY 1 cut(s) 712
BglII AGATCT 1 cut(s) 205
BisI GCNGC 6 cut(s) 257, 321, 495, 712, 925, 976
BlsI GCNGC 6 cut(s) 258, 322, 496, 713, 926, 977
BmcAI AGTACT 1 cut(s) 557
Bme1390I CCNGG 3 cut(s) 809, 971, 972
Bme18I GGWCC 2 cut(s) 460, 1080
BmeT110I CYCGRG 1 cut(s) 970
BmgT120I GGNCC 2 cut(s) 460, 1080
BmrFI CCNGG 3 cut(s) 809, 971, 972
BmsI GCATC 7 cut(s) 46, 322, 336, 612, 634, 783, 985
BpiI GAAGAC 1 cut(s) 730
BpuEI CTTGAG 2 cut(s) 409, 689
BpuMI CCSGG 2 cut(s) 971, 972
BsaHI GRCGYC 1 cut(s) 147
BsaJI CCNNGG 5 cut(s) 246, 318, 452, 818, 970
BsaXI ACNNNNNCTCC 4 cut(s) 65, 90, 95, 120
Bsc4I CCNNNNNNNGG 7 cut(s) 342, 369, 469, 490, 541, 694, 985
Bse1I ACTGG 3 cut(s) 620, 629, 1034
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 809
BseDI CCNNGG 5 cut(s) 246, 318, 452, 818, 970
BseGI GGATG 7 cut(s) 61, 226, 351, 462, 625, 627, 1055
BseLI CCNNNNNNNGG 7 cut(s) 342, 369, 469, 490, 541, 694, 985
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 618, 1141
BseNI ACTGG 3 cut(s) 620, 629, 1034
BseRI GAGGAG 3 cut(s) 86, 101, 266
BseXI GCAGC 5 cut(s) 268, 481, 698, 936, 987
Bsh1236I CGCG 2 cut(s) 320, 798
Bsh1285I CGRYCG 1 cut(s) 415
BshFI GGCC 3 cut(s) 779, 1033, 1121
BsiEI CGRYCG 1 cut(s) 415
BsiHKAI GWGCWC 1 cut(s) 603
BsiHKCI CYCGRG 1 cut(s) 970
BsiSI CCGG 1 cut(s) 971
BslI CCNNNNNNNGG 7 cut(s) 342, 369, 469, 490, 541, 694, 985
BsmAI GTCTC 3 cut(s) 438, 725, 1103
BsmBI CGTCTC 2 cut(s) 725, 1103
BsmI GAATGC 1 cut(s) 829
BsnI GGCC 3 cut(s) 779, 1033, 1121
BsoBI CYCGRG 1 cut(s) 970
Bsp1286I GDGCHC 1 cut(s) 603
Bsp143I GATC 5 cut(s) 205, 312, 412, 961, 1040
BspACI CCGC 4 cut(s) 318, 320, 619, 986
BspANI GGCC 3 cut(s) 779, 1033, 1121
BspCNI CTCAG 2 cut(s) 617, 1140
BspFNI CGCG 2 cut(s) 320, 798
BspMAI CTGCAG 1 cut(s) 926
BspPI GGATC 1 cut(s) 1048
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 3 cut(s) 620, 629, 1034
BssECI CCNNGG 5 cut(s) 246, 318, 452, 818, 970
BssMI GATC 5 cut(s) 205, 312, 412, 961, 1040
BssNI GRCGYC 1 cut(s) 147
BssT1I CCWWGG 2 cut(s) 246, 818
Bst2UI CCWGG 1 cut(s) 809
Bst4CI ACNGT 2 cut(s) 890, 896
Bst6I CTCTTC 1 cut(s) 1095
BstACI GRCGYC 1 cut(s) 147
BstC8I GCNNGC 5 cut(s) 325, 716, 922, 956, 1133
BstDEI CTNAG 2 cut(s) 604, 1127
BstDSI CCRYGG 2 cut(s) 318, 452
BstF5I GGATG 7 cut(s) 61, 226, 351, 462, 625, 627, 1055
BstFNI CGCG 2 cut(s) 320, 798
BstH2I RGCGCY 1 cut(s) 712
BstHHI GCGC 2 cut(s) 711, 798
BstKTI GATC 5 cut(s) 208, 315, 415, 964, 1043
BstMAI GTCTC 3 cut(s) 438, 725, 1103
BstMBI GATC 5 cut(s) 205, 312, 412, 961, 1040
BstMCI CGRYCG 1 cut(s) 415
BstMWI GCNNNNNNNGC 6 cut(s) 265, 346, 386, 395, 715, 1014
BstNI CCWGG 1 cut(s) 809
BstSCI CCNGG 3 cut(s) 807, 969, 970
BstSFI CTRYAG 1 cut(s) 922
BstUI CGCG 2 cut(s) 320, 798
BstV1I GCAGC 5 cut(s) 268, 481, 698, 936, 987
BstV2I GAAGAC 1 cut(s) 730
BstX2I RGATCY 1 cut(s) 205
BstXI CCANNNNNNTGG 1 cut(s) 851
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 3 cut(s) 779, 1033, 1121
BtgI CCRYGG 2 cut(s) 318, 452
BtsCI GGATG 7 cut(s) 61, 226, 351, 462, 625, 627, 1055
BtsI GCAGTG 2 cut(s) 384, 780
BtsIMutI CAGTG 5 cut(s) 157, 384, 613, 780, 1041
Cac8I GCNNGC 5 cut(s) 325, 716, 922, 956, 1133
CfoI GCGC 2 cut(s) 711, 798
Cfr13I GGNCC 2 cut(s) 460, 1080
Cfr42I CCGCGG 1 cut(s) 321
Cfr9I CCCGGG 1 cut(s) 970
CseI GACGC 3 cut(s) 136, 274, 707
CsiI ACCWGGT 1 cut(s) 807
Csp6I GTAC 1 cut(s) 556
CspCI CAANNNNNGTGG 2 cut(s) 674, 709
CviAII CATG 5 cut(s) 187, 283, 292, 959, 1010
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 2 cut(s) 604, 1127
DpnI GATC 5 cut(s) 207, 314, 414, 963, 1042
DpnII GATC 5 cut(s) 205, 312, 412, 961, 1040
EaeI YGGCCR 2 cut(s) 777, 1031
Eam1104I CTCTTC 1 cut(s) 1095
EarI CTCTTC 1 cut(s) 1095
EciI GGCGGA 1 cut(s) 634
Eco130I CCWWGG 2 cut(s) 246, 818
Eco47I GGWCC 2 cut(s) 460, 1080
Eco47III AGCGCT 1 cut(s) 710
Eco88I CYCGRG 1 cut(s) 970
EcoRII CCWGG 1 cut(s) 807
EcoT14I CCWWGG 2 cut(s) 246, 818
EcoT22I ATGCAT 2 cut(s) 627, 1000
ErhI CCWWGG 2 cut(s) 246, 818
Esp3I CGTCTC 2 cut(s) 725, 1103
FaeI CATG 5 cut(s) 190, 286, 295, 962, 1013
FaiI YATR 9 cut(s) 188, 284, 293, 662, 803, 912, 960, 1000, 1011
FatI CATG 5 cut(s) 186, 282, 291, 958, 1009
FbaI TGATCA 1 cut(s) 961
Fnu4HI GCNGC 6 cut(s) 257, 321, 495, 712, 925, 976
FokI GGATG 7 cut(s) 68, 233, 358, 469, 612, 634, 1042
Fsp4HI GCNGC 6 cut(s) 257, 321, 495, 712, 925, 976
FspBI CTAG 1 cut(s) 395
GlaI GCGC 2 cut(s) 710, 797
GluI GCNGC 6 cut(s) 257, 321, 495, 712, 925, 976
HaeII RGCGCY 1 cut(s) 712
HaeIII GGCC 3 cut(s) 779, 1033, 1121
HapII CCGG 1 cut(s) 971
HgaI GACGC 3 cut(s) 136, 274, 707
HhaI GCGC 2 cut(s) 711, 798
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 5 cut(s) 190, 286, 295, 962, 1013
Hin6I GCGC 2 cut(s) 709, 796
HinP1I GCGC 2 cut(s) 709, 796
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 5 cut(s) 10, 305, 577, 743, 1025
HpaI GTTAAC 1 cut(s) 403
HpaII CCGG 1 cut(s) 971
HphI GGTGA 2 cut(s) 140, 1000
Hpy166II GTNNAC 4 cut(s) 358, 375, 403, 883
Hpy188I TCNGA 3 cut(s) 582, 674, 900
Hpy188III TCNNGA 4 cut(s) 14, 439, 747, 1075
Hpy8I GTNNAC 4 cut(s) 358, 375, 403, 883
HpyAV CCTTC 5 cut(s) 183, 545, 660, 734, 777
HpyCH4III ACNGT 2 cut(s) 890, 896
HpyCH4V TGCA 5 cut(s) 389, 625, 785, 924, 998
HpyF10VI GCNNNNNNNGC 6 cut(s) 265, 346, 386, 395, 715, 1014
HpyF3I CTNAG 2 cut(s) 604, 1127
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 5 cut(s) 190, 286, 295, 962, 1013
HspAI GCGC 2 cut(s) 709, 796
Ksp22I TGATCA 1 cut(s) 961
KspAI GTTAAC 1 cut(s) 403
KspI CCGCGG 1 cut(s) 321
Kzo9I GATC 5 cut(s) 205, 312, 412, 961, 1040
LmnI GCTCC 2 cut(s) 195, 253
Lsp1109I GCAGC 5 cut(s) 268, 481, 698, 936, 987
LweI GCATC 7 cut(s) 46, 322, 336, 612, 634, 783, 985
MabI ACCWGGT 1 cut(s) 807
MaeI CTAG 1 cut(s) 395
MaeIII GTNAC 3 cut(s) 475, 631, 890
MalI GATC 5 cut(s) 207, 314, 414, 963, 1042
MboI GATC 5 cut(s) 205, 312, 412, 961, 1040
MboII GAAGA 4 cut(s) 518, 730, 1044, 1112
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 603
MlsI TGGCCA 2 cut(s) 779, 1033
MluCI AATT 1 cut(s) 1115
MluNI TGGCCA 2 cut(s) 779, 1033
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 177
Mox20I TGGCCA 2 cut(s) 779, 1033
Mph1103I ATGCAT 2 cut(s) 627, 1000
MscI TGGCCA 2 cut(s) 779, 1033
MseI TTAA 2 cut(s) 402, 1165
Msp20I TGGCCA 2 cut(s) 779, 1033
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 1 cut(s) 971
MspR9I CCNGG 3 cut(s) 809, 971, 972
Mva1269I GAATGC 1 cut(s) 829
MvaI CCWGG 1 cut(s) 809
MvnI CGCG 2 cut(s) 320, 798
MwoI GCNNNNNNNGC 6 cut(s) 265, 346, 386, 395, 715, 1014
NciI CCSGG 2 cut(s) 971, 972
NdeII GATC 5 cut(s) 205, 312, 412, 961, 1040
NlaIII CATG 5 cut(s) 190, 286, 295, 962, 1013
NmuCI GTSAC 2 cut(s) 475, 631
NsiI ATGCAT 2 cut(s) 627, 1000
PcsI WCGNNNNNNNCGW 1 cut(s) 641
PctI GAATGC 1 cut(s) 829
PfeI GAWTC 4 cut(s) 10, 577, 743, 1025
PflFI GACNNNGTC 1 cut(s) 809
PflMI CCANNNNNTGG 1 cut(s) 469
PkrI GCNGC 6 cut(s) 258, 322, 496, 713, 926, 977
Ple19I CGATCG 1 cut(s) 415
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
Psp6I CCWGG 1 cut(s) 807
PspGI CCWGG 1 cut(s) 807
PspPI GGNCC 2 cut(s) 460, 1080
PsrI GAACNNNNNNTAC 4 cut(s) 350, 382, 875, 907
PstI CTGCAG 1 cut(s) 926
PsuI RGATCY 1 cut(s) 205
PsyI GACNNNGTC 1 cut(s) 809
PvuI CGATCG 1 cut(s) 415
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
SacII CCGCGG 1 cut(s) 321
SaqAI TTAA 2 cut(s) 402, 1165
SatI GCNGC 6 cut(s) 257, 321, 495, 712, 925, 976
Sau3AI GATC 5 cut(s) 205, 312, 412, 961, 1040
Sau96I GGNCC 2 cut(s) 460, 1080
ScaI AGTACT 1 cut(s) 557
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 3 cut(s) 809, 971, 972
SduI GDGCHC 1 cut(s) 603
SexAI ACCWGGT 1 cut(s) 807
SfaNI GCATC 7 cut(s) 46, 322, 336, 612, 634, 783, 985
SfcI CTRYAG 1 cut(s) 922
Sfr303I CCGCGG 1 cut(s) 321
SgrBI CCGCGG 1 cut(s) 321
SinI GGWCC 2 cut(s) 460, 1080
SmaI CCCGGG 1 cut(s) 972
SmlI CTYRAG 2 cut(s) 424, 704
SmoI CTYRAG 2 cut(s) 424, 704
Sse9I AATT 1 cut(s) 1115
SsiI CCGC 4 cut(s) 318, 320, 619, 986
SspMI CTAG 1 cut(s) 395
StyD4I CCNGG 3 cut(s) 807, 969, 970
StyI CCWWGG 2 cut(s) 246, 818
TaaI ACNGT 2 cut(s) 890, 896
TaqI TCGA 7 cut(s) 411, 564, 651, 741, 746, 813, 906
TasI AATT 1 cut(s) 1115
TatI WGTACW 1 cut(s) 555
TauI GCSGC 1 cut(s) 323
TfiI GAWTC 4 cut(s) 10, 577, 743, 1025
Tru1I TTAA 2 cut(s) 402, 1165
Tru9I TTAA 2 cut(s) 402, 1165
TscAI CASTG 5 cut(s) 157, 391, 620, 787, 1041
TseFI GTSAC 2 cut(s) 475, 631
TseI GCWGC 5 cut(s) 256, 494, 711, 924, 975
Tsp45I GTSAC 2 cut(s) 475, 631
TspDTI ATGAA 4 cut(s) 23, 409, 1026, 1044
TspGWI ACGGA 2 cut(s) 721, 746
TspMI CCCGGG 1 cut(s) 970
TspRI CASTG 5 cut(s) 157, 391, 620, 787, 1041
Tth111I GACNNNGTC 1 cut(s) 809
Van91I CCANNNNNTGG 1 cut(s) 469
VpaK11BI GGWCC 2 cut(s) 460, 1080
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XmaI CCCGGG 1 cut(s) 970
XspI CTAG 1 cut(s) 395
ZrmI AGTACT 1 cut(s) 557
Zsp2I ATGCAT 2 cut(s) 627, 1000
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.