Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Reverse (-)

66043880 .. 66047000

Gene Structure 3121 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG494500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAAGAAGATGGATCAGCCATTTCTCTTGGACGCTCTGTTCTGCTCGGAACAACATTTGGATGAGGAAGAGCAAGAAGCTACGGTGTTGGACTATTCAGAGGAATTTGTTGAAGATAGTTCTTTTTATAGCAACAACTCTTCGTCTTGTAAACAACAACAACAACCAATAAAGTCCCCAATCTTGCTAGAGCAAGACCTGTTCTGGGACGATGAGGAACTCACCTCTCTGTTGTCGAAAGAGAAACTGAATCAAGGTCGGAAAATCCTGAATCCCAACTCGTCTTTGGCCGGGGCTCGTAAGGAGGCTGTGGATTGGATGCTGAGGGTCAATGCCCACTACTCTTTCTCTGCTCTCACTGCGGTTCTGGCCGTCGATTACCTCGATAGGTTTTTCTTCAGCTTCCAATTTCAGACCGAGAAGCCATGGATGACACAGCTCGCTGCCGTGGCTTGTATCTCCCTTGCTGCAAAAGTGGAGGAGACCCAAGTCCCCTTATTACTAGACTTCCAAGTTGAGGACAGTAAGTATGTGTTCGAAGCTAAAACGATTAACCGAATGGAGATTTTGGTTCTCTCAACTCTTGATTGGAAGATGAATCCGGTGACCCCAATTTCGTTTCTTGATTACATGACAAGGAGGTTTGGTTTGAAAGACCATCTCTGCTGGGAATTCCTCAAGAGATGTGAGCTCATCCTTGTCAATCTCATCTCAGGTAACCCCATCCTTCTCATCCAAATCTGGTCTCTCCTTATCCTCCTTGTTGTTAAATTTGATGCCTTTGTTCAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

264

Amino Acids

30.63

Weight (kDa)

4.68

Isoelectric Point (pI)

51.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	97 - 200	9.6e-26	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	1 cut(s)	21
AcoI	YGGCCR	2 cut(s)	288, 369
AcsI	RAATTY	3 cut(s)	104, 671, 770
AcuI	CTGAAG	1 cut(s)	382
AfiI	CCNNNNNNNGG	2 cut(s)	205, 517
AgsI	TTSAA	3 cut(s)	113, 652, 788
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
AluBI	AGCT	5 cut(s)	80, 402, 439, 542, 691
AluI	AGCT	5 cut(s)	80, 402, 439, 542, 691
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	2 cut(s)	476, 750
AlwI	GGATC	1 cut(s)	21
AoxI	GGCC	2 cut(s)	288, 369
ApeKI	GCWGC	2 cut(s)	443, 467
ApoI	RAATTY	3 cut(s)	104, 671, 770
ArsI	GACNNNNNNTTYG	2 cut(s)	598, 630
AsuC2I	CCSGG	1 cut(s)	292
AsuHPI	GGTGA	2 cut(s)	214, 616
AsuII	TTCGAA	1 cut(s)	537
BanII	GRGCYC	2 cut(s)	298, 693
Bbv12I	GWGCWC	1 cut(s)	693
BbvCI	CCTCAGC	1 cut(s)	323
BbvI	GCAGC	2 cut(s)	430, 454
BccI	CCATC	3 cut(s)	4, 666, 731
BceAI	ACGGC	2 cut(s)	356, 431
BcnI	CCSGG	1 cut(s)	292
BcoDI	GTCTC	2 cut(s)	476, 750
BfaI	CTAG	2 cut(s)	188, 503
BisI	GCNGC	2 cut(s)	444, 468
BlsI	GCNGC	2 cut(s)	445, 469
Bme1390I	CCNGG	1 cut(s)	292
BmrFI	CCNGG	1 cut(s)	292
BmsI	GCATC	2 cut(s)	309, 766
BoxI	GACNNNNGTC	1 cut(s)	488
Bpu10I	CCTNAGC	1 cut(s)	323
Bpu14I	TTCGAA	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	662
BpuMI	CCSGG	1 cut(s)	292
BsaI	GGTCTC	2 cut(s)	476, 750
BsaJI	CCNNGG	3 cut(s)	291, 425, 447
BsaWI	WCCGGW	1 cut(s)	601
BsaXI	ACNNNNNCTCC	2 cut(s)	631, 661
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 517
BseDI	CCNNGG	3 cut(s)	291, 425, 447
BseGI	GGATG	6 cut(s)	67, 324, 435, 693, 723, 732
BseLI	CCNNNNNNNGG	2 cut(s)	205, 517
BseMII	CTCAG	2 cut(s)	314, 726
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	2 cut(s)	430, 454
BseYI	CCCAGC	1 cut(s)	666
BshFI	GGCC	2 cut(s)	290, 371
BsiHKAI	GWGCWC	1 cut(s)	693
BsiSI	CCGG	2 cut(s)	291, 602
BslFI	GGGAC	3 cut(s)	160, 221, 476
BslI	CCNNNNNNNGG	2 cut(s)	205, 517
BsmAI	GTCTC	2 cut(s)	476, 750
BsmFI	GGGAC	3 cut(s)	160, 221, 476
BsnI	GGCC	2 cut(s)	290, 371
Bso31I	GGTCTC	2 cut(s)	476, 750
Bsp119I	TTCGAA	1 cut(s)	537
Bsp1286I	GDGCHC	2 cut(s)	298, 693
Bsp143I	GATC	1 cut(s)	13
Bsp19I	CCATGG	1 cut(s)	425
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	2 cut(s)	290, 371
BspCNI	CTCAG	2 cut(s)	315, 725
BspPI	GGATC	1 cut(s)	21
BspQI	GCTCTTC	1 cut(s)	63
BspT104I	TTCGAA	1 cut(s)	537
BspTNI	GGTCTC	2 cut(s)	476, 750
BssECI	CCNNGG	3 cut(s)	291, 425, 447
BssMI	GATC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	425
Bst4CI	ACNGT	2 cut(s)	85, 524
Bst6I	CTCTTC	2 cut(s)	63, 145
BstBI	TTCGAA	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	2 cut(s)	323, 712
BstDSI	CCRYGG	2 cut(s)	425, 447
BstEII	GGTNACC	2 cut(s)	604, 716
BstF5I	GGATG	6 cut(s)	67, 324, 435, 693, 723, 732
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	2 cut(s)	476, 750
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	3 cut(s)	359, 368, 449
BstPAI	GACNNNNGTC	1 cut(s)	488
BstPI	GGTNACC	2 cut(s)	604, 716
BstSCI	CCNGG	1 cut(s)	290
BstV1I	GCAGC	2 cut(s)	430, 454
BsuRI	GGCC	2 cut(s)	290, 371
BtgI	CCRYGG	2 cut(s)	425, 447
BtsCI	GGATG	6 cut(s)	67, 324, 435, 693, 723, 732
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	1 cut(s)	441
CseI	GACGC	1 cut(s)	41
CviAII	CATG	2 cut(s)	426, 631
DdeI	CTNAG	2 cut(s)	323, 712
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
EaeI	YGGCCR	2 cut(s)	288, 369
Eam1104I	CTCTTC	2 cut(s)	63, 145
EarI	CTCTTC	2 cut(s)	63, 145
Ecl136II	GAGCTC	1 cut(s)	691
Eco130I	CCWWGG	1 cut(s)	425
Eco24I	GRGCYC	2 cut(s)	298, 693
Eco31I	GGTCTC	2 cut(s)	476, 750
Eco53kI	GAGCTC	1 cut(s)	691
Eco57I	CTGAAG	1 cut(s)	382
Eco91I	GGTNACC	2 cut(s)	604, 716
EcoICRI	GAGCTC	1 cut(s)	691
EcoO65I	GGTNACC	2 cut(s)	604, 716
EcoRI	GAATTC	1 cut(s)	671
EcoT14I	CCWWGG	1 cut(s)	425
EcoT38I	GRGCYC	2 cut(s)	298, 693
ErhI	CCWWGG	1 cut(s)	425
FaeI	CATG	2 cut(s)	429, 634
FaiI	YATR	4 cut(s)	129, 427, 531, 632
FaqI	GGGAC	3 cut(s)	160, 221, 476
FatI	CATG	2 cut(s)	425, 630
Fnu4HI	GCNGC	2 cut(s)	444, 468
FokI	GGATG	6 cut(s)	74, 331, 442, 680, 710, 719
FriOI	GRGCYC	2 cut(s)	298, 693
Fsp4HI	GCNGC	2 cut(s)	444, 468
FspBI	CTAG	2 cut(s)	188, 503
GluI	GCNGC	2 cut(s)	444, 468
GsaI	CCCAGC	1 cut(s)	670
HaeIII	GGCC	2 cut(s)	290, 371
HapII	CCGG	2 cut(s)	291, 602
HgaI	GACGC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	429, 634
HinfI	GANTC	3 cut(s)	250, 271, 598
HpaII	CCGG	2 cut(s)	291, 602
HphI	GGTGA	2 cut(s)	214, 616
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	4 cut(s)	49, 100, 261, 414
Hpy188III	TCNNGA	4 cut(s)	268, 584, 623, 679
Hpy8I	GTNNAC	1 cut(s)	152
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	737
HpyCH4III	ACNGT	2 cut(s)	85, 524
HpyCH4V	TGCA	1 cut(s)	470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	359, 368, 449
HpyF3I	CTNAG	2 cut(s)	323, 712
Hsp92II	CATG	2 cut(s)	429, 634
Kzo9I	GATC	1 cut(s)	13
LguI	GCTCTTC	1 cut(s)	63
LpnPI	CCDG	9 cut(s)	190, 212, 281, 304, 353, 615, 652, 699, 727
Lsp1109I	GCAGC	2 cut(s)	430, 454
LweI	GCATC	2 cut(s)	309, 766
MaeI	CTAG	2 cut(s)	188, 503
MaeIII	GTNAC	2 cut(s)	604, 716
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	7 cut(s)	16, 19, 80, 125, 132, 388, 604
MhlI	GDGCHC	2 cut(s)	298, 693
MluCI	AATT	5 cut(s)	104, 407, 612, 671, 770
MmeI	TCCRAC	2 cut(s)	69, 239
MseI	TTAA	2 cut(s)	552, 768
MslI	CAYNNNNRTG	1 cut(s)	60
MspI	CCGG	2 cut(s)	291, 602
MspR9I	CCNGG	1 cut(s)	292
MwoI	GCNNNNNNNGC	3 cut(s)	359, 368, 449
NciI	CCSGG	1 cut(s)	292
NcoI	CCATGG	1 cut(s)	425
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	2 cut(s)	429, 634
NmuCI	GTSAC	1 cut(s)	604
NspV	TTCGAA	1 cut(s)	537
PciSI	GCTCTTC	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PfeI	GAWTC	3 cut(s)	250, 271, 598
PkrI	GCNGC	2 cut(s)	445, 469
PshAI	GACNNNNGTC	1 cut(s)	488
Psp124BI	GAGCTC	1 cut(s)	693
PspEI	GGTNACC	2 cut(s)	604, 716
PspFI	CCCAGC	1 cut(s)	666
RseI	CAYNNNNRTG	1 cut(s)	60
SacI	GAGCTC	1 cut(s)	693
SapI	GCTCTTC	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	552, 768
SatI	GCNGC	2 cut(s)	444, 468
Sau3AI	GATC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	292
SduI	GDGCHC	2 cut(s)	298, 693
SfaNI	GCATC	2 cut(s)	309, 766
SfuI	TTCGAA	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	5 cut(s)	104, 407, 612, 671, 770
SsiI	CCGC	1 cut(s)	362
SspMI	CTAG	2 cut(s)	188, 503
SstI	GAGCTC	1 cut(s)	693
StyD4I	CCNGG	1 cut(s)	290
StyI	CCWWGG	1 cut(s)	425
TaaI	ACNGT	2 cut(s)	85, 524
TaqI	TCGA	4 cut(s)	236, 375, 384, 537
TaqII	GACCGA	1 cut(s)	431
TasI	AATT	5 cut(s)	104, 407, 612, 671, 770
TfiI	GAWTC	3 cut(s)	250, 271, 598
Tru1I	TTAA	2 cut(s)	552, 768
Tru9I	TTAA	2 cut(s)	552, 768
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	2 cut(s)	443, 467
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	2 cut(s)	17, 611
TspRI	CASTG	1 cut(s)	364
XapI	RAATTY	3 cut(s)	104, 671, 770
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XspI	CTAG	2 cut(s)	188, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.