Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Reverse (-)

64465204 .. 64466677

Gene Structure 1474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG479800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAAGAAGATGGATCAGCCATTTCTCTTGGACGCTCTGTTCTGCTCGGAACAACATTTGGATGAGGAAGAGCAAGAAGCTACGGTGTTGGACTATTCAGAGGAATTTGTTGAAGATAGTTCTTTTTATAGCAACAACTCTTCGTCTTGTAAACAACAGCAACCAATAAAGTCCCCAATCTTGCTAGAGCAAGACCTGTTCTGGGACGATGAGGAACTCACCTCTCTGTTGTCGAAAGAGAAACTGAATCAAGATCGGAAAATCCTGAATCCCAACTCGTCTTTGGCCGGGGCTCGTAAGGAGGCTGTGGATTGGATGCTGAGGGTCAATGCCCGCTACTCTTTCTCTGCTCTCACTGCGGTTCTGGCCGTCGATTACCTCGATAGGTTTTTCTTCAGCTTCCAATTTCAGACCGAGAAGCCATGGATGACACAGCTCGCTGCCGTGGCTTGTATCTCCCTTGCTGCAAAAGTGGAGGAGACCCAAGTCCCCTTATTACTAGACTTCCAAGTTGAGGACAGTAAGTATGTGTTCGAAGCTAAAACGATTAACCGAATGGAGATTTTGGTTCTCTCAACTCTTGATTGGAAGATGAATCCGGTGACCCCAATTTCGTTTCTTGATTACATGACAAGGAGGTTTGGTTTGAAAGACCATCTCTGCTGGGAATTCCTCAAGAGATGTGAGCTCATCCTTGTCAATCTCATCTCAGATTCTAGGTTCTTGTCTTTCCTTCCATCTGTAGTGGCTACTGCCACAATGCTGCACGTTGTCAATAACATTGAGCCTTGTCTTCAAGTTGAGTATGAAAACCAGCTCTTGACTATTCTCGGAATCGACAAGGGTTTGGCGGATGATTGCTCTAAGCTCATAATGGAACTGTCATCATCGTGGTCGAGAAACAAGCGCAAGTTTGGTTACTCAATTCCTGGGAGCCCAAATGGAGTCATTGACATATCATTCAGCTCGGACAGCTCAAATGACTCATGGGCCGTGGCCTCATCAGTCTCGTCTTCACCGGAACCTCTGTCCAAGAAAAGCAGGGCTCTGGAAAAGCAGCTTCTGGAGAAGCTCAACCAAACAGCAAATGCAGCAGCAGATATTCTCAGCCTTCCACGCCTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

375

Amino Acids

42.57

Weight (kDa)

4.77

Isoelectric Point (pI)

52.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	93 - 199	1.4e-25	Cyclin, N-terminal domain
Cyclin_C	PF02984	201 - 302	4.5e-13	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	334, 359, 851
AclWI	GGATC	1 cut(s)	21
AcoI	YGGCCR	2 cut(s)	285, 366
AcsI	RAATTY	2 cut(s)	104, 668
AcuI	CTGAAG	1 cut(s)	379
AfiI	CCNNNNNNNGG	2 cut(s)	202, 514
AgsI	TTSAA	3 cut(s)	113, 649, 797
AjnI	CCWGG	1 cut(s)	928
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
Alw21I	GWGCWC	1 cut(s)	690
Alw26I	GTCTC	2 cut(s)	473, 1012
AlwI	GGATC	1 cut(s)	21
AlwNI	CAGNNNCTG	1 cut(s)	1063
AoxI	GGCC	4 cut(s)	285, 366, 990, 996
ApeKI	GCWGC	6 cut(s)	440, 464, 763, 1057, 1091, 1094
ApoI	RAATTY	2 cut(s)	104, 668
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
AspLEI	GCGC	1 cut(s)	909
AspS9I	GGNCC	1 cut(s)	990
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	3 cut(s)	211, 613, 1008
AsuII	TTCGAA	1 cut(s)	534
BanII	GRGCYC	4 cut(s)	295, 690, 938, 1048
BbsI	GAAGAC	2 cut(s)	785, 1005
Bbv12I	GWGCWC	1 cut(s)	690
BbvCI	CCTCAGC	1 cut(s)	320
BbvI	GCAGC	6 cut(s)	427, 451, 750, 1069, 1103, 1106
BccI	CCATC	3 cut(s)	4, 663, 745
BceAI	ACGGC	3 cut(s)	353, 428, 977
BciT130I	CCWGG	1 cut(s)	930
BcnI	CCSGG	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	473, 1012
BfaI	CTAG	3 cut(s)	185, 500, 717
BfmI	CTRYAG	1 cut(s)	741
BisI	GCNGC	6 cut(s)	441, 465, 764, 1058, 1092, 1095
BlsI	GCNGC	6 cut(s)	442, 466, 765, 1059, 1093, 1096
Bme1390I	CCNGG	2 cut(s)	289, 930
BmgT120I	GGNCC	1 cut(s)	990
BmiI	GGNNCC	2 cut(s)	935, 1023
BmrFI	CCNGG	2 cut(s)	289, 930
BmsI	GCATC	1 cut(s)	306
BoxI	GACNNNNGTC	1 cut(s)	485
BpiI	GAAGAC	2 cut(s)	785, 1005
BpmI	CTGGAG	1 cut(s)	1085
Bpu10I	CCTNAGC	1 cut(s)	320
Bpu14I	TTCGAA	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	659
BpuMI	CCSGG	1 cut(s)	289
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	5 cut(s)	288, 422, 444, 929, 993
BsaWI	WCCGGW	2 cut(s)	598, 1018
BsaXI	ACNNNNNCTCC	2 cut(s)	628, 658
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 514
BseBI	CCWGG	1 cut(s)	930
BseDI	CCNNGG	5 cut(s)	288, 422, 444, 929, 993
BseGI	GGATG	5 cut(s)	67, 321, 432, 690, 859
BseLI	CCNNNNNNNGG	2 cut(s)	202, 514
BseMII	CTCAG	3 cut(s)	311, 723, 1120
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	6 cut(s)	427, 451, 750, 1069, 1103, 1106
BseYI	CCCAGC	1 cut(s)	663
BsgI	GTGCAG	1 cut(s)	749
BshFI	GGCC	4 cut(s)	287, 368, 992, 998
BsiHKAI	GWGCWC	1 cut(s)	690
BsiSI	CCGG	3 cut(s)	288, 599, 1019
BslFI	GGGAC	3 cut(s)	157, 218, 473
BslI	CCNNNNNNNGG	2 cut(s)	202, 514
BsmAI	GTCTC	2 cut(s)	473, 1012
BsmFI	GGGAC	3 cut(s)	157, 218, 473
BsnI	GGCC	4 cut(s)	287, 368, 992, 998
Bso31I	GGTCTC	1 cut(s)	473
Bsp119I	TTCGAA	1 cut(s)	534
Bsp1286I	GDGCHC	4 cut(s)	295, 690, 938, 1048
Bsp143I	GATC	2 cut(s)	13, 253
Bsp19I	CCATGG	1 cut(s)	422
BspACI	CCGC	3 cut(s)	334, 359, 851
BspANI	GGCC	4 cut(s)	287, 368, 992, 998
BspCNI	CTCAG	3 cut(s)	312, 722, 1119
BspLI	GGNNCC	2 cut(s)	935, 1023
BspPI	GGATC	1 cut(s)	21
BspQI	GCTCTTC	1 cut(s)	63
BspT104I	TTCGAA	1 cut(s)	534
BspTNI	GGTCTC	1 cut(s)	473
BssECI	CCNNGG	5 cut(s)	288, 422, 444, 929, 993
BssMI	GATC	2 cut(s)	13, 253
BssT1I	CCWWGG	1 cut(s)	422
Bst2UI	CCWGG	1 cut(s)	930
Bst4CI	ACNGT	3 cut(s)	85, 521, 882
Bst6I	CTCTTC	2 cut(s)	63, 145
BstBI	TTCGAA	1 cut(s)	534
BstC8I	GCNNGC	2 cut(s)	334, 438
BstDEI	CTNAG	4 cut(s)	320, 709, 864, 1106
BstDSI	CCRYGG	3 cut(s)	422, 444, 993
BstEII	GGTNACC	1 cut(s)	601
BstF5I	GGATG	5 cut(s)	67, 321, 432, 690, 859
BstHHI	GCGC	1 cut(s)	909
BstKTI	GATC	2 cut(s)	16, 256
BstMAI	GTCTC	2 cut(s)	473, 1012
BstMBI	GATC	2 cut(s)	13, 253
BstMWI	GCNNNNNNNGC	6 cut(s)	356, 365, 446, 972, 1091, 1116
BstNI	CCWGG	1 cut(s)	930
BstPAI	GACNNNNGTC	1 cut(s)	485
BstPI	GGTNACC	1 cut(s)	601
BstSCI	CCNGG	2 cut(s)	287, 928
BstSFI	CTRYAG	1 cut(s)	741
BstV1I	GCAGC	6 cut(s)	427, 451, 750, 1069, 1103, 1106
BstV2I	GAAGAC	2 cut(s)	785, 1005
BsuRI	GGCC	4 cut(s)	287, 368, 992, 998
BtgI	CCRYGG	3 cut(s)	422, 444, 993
BtsCI	GGATG	5 cut(s)	67, 321, 432, 690, 859
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	2 cut(s)	334, 438
CaiI	CAGNNNCTG	1 cut(s)	1063
CfoI	GCGC	1 cut(s)	909
Cfr13I	GGNCC	1 cut(s)	990
CseI	GACGC	1 cut(s)	41
CviAII	CATG	3 cut(s)	423, 628, 987
DdeI	CTNAG	4 cut(s)	320, 709, 864, 1106
DpnI	GATC	2 cut(s)	15, 255
DpnII	GATC	2 cut(s)	13, 253
EaeI	YGGCCR	2 cut(s)	285, 366
Eam1104I	CTCTTC	2 cut(s)	63, 145
EarI	CTCTTC	2 cut(s)	63, 145
EciI	GGCGGA	1 cut(s)	866
Ecl136II	GAGCTC	1 cut(s)	688
Eco130I	CCWWGG	1 cut(s)	422
Eco24I	GRGCYC	4 cut(s)	295, 690, 938, 1048
Eco31I	GGTCTC	1 cut(s)	473
Eco53kI	GAGCTC	1 cut(s)	688
Eco57I	CTGAAG	1 cut(s)	379
Eco91I	GGTNACC	1 cut(s)	601
EcoICRI	GAGCTC	1 cut(s)	688
EcoO65I	GGTNACC	1 cut(s)	601
EcoRI	GAATTC	1 cut(s)	668
EcoRII	CCWGG	1 cut(s)	928
EcoT14I	CCWWGG	1 cut(s)	422
EcoT38I	GRGCYC	4 cut(s)	295, 690, 938, 1048
ErhI	CCWWGG	1 cut(s)	422
FaeI	CATG	3 cut(s)	426, 631, 990
FaiI	YATR	8 cut(s)	129, 424, 528, 629, 807, 872, 956, 988
FaqI	GGGAC	3 cut(s)	157, 218, 473
FatI	CATG	3 cut(s)	422, 627, 986
FauI	CCCGC	1 cut(s)	341
Fnu4HI	GCNGC	6 cut(s)	441, 465, 764, 1058, 1092, 1095
FokI	GGATG	5 cut(s)	74, 328, 439, 677, 866
FriOI	GRGCYC	4 cut(s)	295, 690, 938, 1048
Fsp4HI	GCNGC	6 cut(s)	441, 465, 764, 1058, 1092, 1095
FspBI	CTAG	3 cut(s)	185, 500, 717
GlaI	GCGC	1 cut(s)	908
GluI	GCNGC	6 cut(s)	441, 465, 764, 1058, 1092, 1095
GsaI	CCCAGC	1 cut(s)	667
GsuI	CTGGAG	1 cut(s)	1085
HaeIII	GGCC	4 cut(s)	287, 368, 992, 998
HapII	CCGG	3 cut(s)	288, 599, 1019
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	909
Hin1II	CATG	3 cut(s)	426, 631, 990
Hin6I	GCGC	1 cut(s)	907
HinP1I	GCGC	1 cut(s)	907
HinfI	GANTC	7 cut(s)	247, 268, 595, 713, 834, 945, 983
HpaII	CCGG	3 cut(s)	288, 599, 1019
HphI	GGTGA	3 cut(s)	211, 613, 1008
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	7 cut(s)	49, 100, 258, 411, 712, 833, 970
Hpy188III	TCNNGA	9 cut(s)	251, 265, 581, 620, 676, 820, 897, 1049, 1064
Hpy8I	GTNNAC	1 cut(s)	152
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	2 cut(s)	743, 1121
HpyCH4III	ACNGT	3 cut(s)	85, 521, 882
HpyCH4IV	ACGT	1 cut(s)	768
HpyCH4V	TGCA	3 cut(s)	467, 766, 1091
HpyF10VI	GCNNNNNNNGC	6 cut(s)	356, 365, 446, 972, 1091, 1116
HpyF3I	CTNAG	4 cut(s)	320, 709, 864, 1106
HpySE526I	ACGT	1 cut(s)	768
Hsp92II	CATG	3 cut(s)	426, 631, 990
HspAI	GCGC	1 cut(s)	907
Kzo9I	GATC	2 cut(s)	13, 253
LguI	GCTCTTC	1 cut(s)	63
LmnI	GCTCC	1 cut(s)	933
Lsp1109I	GCAGC	6 cut(s)	427, 451, 750, 1069, 1103, 1106
LweI	GCATC	1 cut(s)	306
MaeI	CTAG	3 cut(s)	185, 500, 717
MaeII	ACGT	1 cut(s)	768
MaeIII	GTNAC	2 cut(s)	601, 917
MalI	GATC	2 cut(s)	15, 255
MboI	GATC	2 cut(s)	13, 253
MboII	GAAGA	9 cut(s)	16, 19, 80, 125, 132, 385, 601, 785, 1005
MhlI	GDGCHC	4 cut(s)	295, 690, 938, 1048
MluCI	AATT	5 cut(s)	104, 404, 609, 668, 924
MlyI	GAGTC	2 cut(s)	954, 977
MmeI	TCCRAC	1 cut(s)	69
MseI	TTAA	1 cut(s)	549
MslI	CAYNNNNRTG	2 cut(s)	60, 889
MspI	CCGG	3 cut(s)	288, 599, 1019
MspR9I	CCNGG	2 cut(s)	289, 930
MvaI	CCWGG	1 cut(s)	930
MwoI	GCNNNNNNNGC	6 cut(s)	356, 365, 446, 972, 1091, 1116
NciI	CCSGG	1 cut(s)	289
NcoI	CCATGG	1 cut(s)	422
NdeII	GATC	2 cut(s)	13, 253
NlaIII	CATG	3 cut(s)	426, 631, 990
NlaIV	GGNNCC	2 cut(s)	935, 1023
NmuCI	GTSAC	1 cut(s)	601
NspV	TTCGAA	1 cut(s)	534
PciSI	GCTCTTC	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PfeI	GAWTC	5 cut(s)	247, 268, 595, 713, 834
PkrI	GCNGC	6 cut(s)	442, 466, 765, 1059, 1093, 1096
PleI	GAGTC	2 cut(s)	953, 977
PpsI	GAGTC	2 cut(s)	953, 977
PshAI	GACNNNNGTC	1 cut(s)	485
Psp124BI	GAGCTC	1 cut(s)	690
Psp6I	CCWGG	1 cut(s)	928
PspEI	GGTNACC	1 cut(s)	601
PspFI	CCCAGC	1 cut(s)	663
PspGI	CCWGG	1 cut(s)	928
PspN4I	GGNNCC	2 cut(s)	935, 1023
PspPI	GGNCC	1 cut(s)	990
PstNI	CAGNNNCTG	1 cut(s)	1063
RseI	CAYNNNNRTG	2 cut(s)	60, 889
SacI	GAGCTC	1 cut(s)	690
SapI	GCTCTTC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	6 cut(s)	441, 465, 764, 1058, 1092, 1095
Sau3AI	GATC	2 cut(s)	13, 253
Sau96I	GGNCC	1 cut(s)	990
SchI	GAGTC	2 cut(s)	954, 977
ScrFI	CCNGG	2 cut(s)	289, 930
SduI	GDGCHC	4 cut(s)	295, 690, 938, 1048
SfaNI	GCATC	1 cut(s)	306
SfcI	CTRYAG	1 cut(s)	741
SfuI	TTCGAA	1 cut(s)	534
SmiMI	CAYNNNNRTG	2 cut(s)	60, 889
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse9I	AATT	5 cut(s)	104, 404, 609, 668, 924
SsiI	CCGC	3 cut(s)	334, 359, 851
SspMI	CTAG	3 cut(s)	185, 500, 717
SstI	GAGCTC	1 cut(s)	690
StyD4I	CCNGG	2 cut(s)	287, 928
StyI	CCWWGG	1 cut(s)	422
TaaI	ACNGT	3 cut(s)	85, 521, 882
TaiI	ACGT	1 cut(s)	771
TaqI	TCGA	6 cut(s)	233, 372, 381, 534, 837, 896
TaqII	GACCGA	1 cut(s)	428
TasI	AATT	5 cut(s)	104, 404, 609, 668, 924
TfiI	GAWTC	5 cut(s)	247, 268, 595, 713, 834
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	601
TseI	GCWGC	6 cut(s)	440, 464, 763, 1057, 1091, 1094
Tsp45I	GTSAC	1 cut(s)	601
TspDTI	ATGAA	3 cut(s)	17, 608, 822
TspRI	CASTG	1 cut(s)	361
XapI	RAATTY	2 cut(s)	104, 668
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XspI	CTAG	3 cut(s)	185, 500, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.