MD05G1087300.v1.1

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
18668713 .. 18671037
2325 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1087300.v1.1.491

Sequence Viewer

Length: 1170 bp
ATGGCAATGAATCACGACCAACACCAAAACCCACAAAGCCATACACTTTTGCTGGATGCTTTGCTCTGTGAGGAGGACAAGTGGGAGGAGGAGGACGATGGAGAGGTGGTGGAACAAGAAGTGAGTAGTGGTGAGAACTACAACAATGGCGTCAGTGGGAAAAACCCAAACTGCCCTTCTCTGTTTCCCATTCTCCTGTTGGAACAAGATCTGTTCTGGGAGGATGATGAGCTTGTTTCTCTCTTTTCCAAGGAGGAGCAGGAACAGACGCATTTCGTCAAACACATGGAGGGCATGGGAACAGAGGACTCTTTGATCTCCGCGGCTCGCCGTGATGCCGTGCTGTGGATGCTCAAAGTGAACGCCCATCACGGGTTCACAGCCCTCACTGCAATCCTAGCCGTTAACTACTTCGATCGGTTCATCTCAAGCTTCCATTTCCAGAGAGACAAACCGTGGATGGTACAGCTTGTGGCCGTCACTTGCCTCTCTCTGGCTGCCAAAGTGGAAGAAACAGAAGTTCCTCTGCTTTTAGACCTTCAAGTGGAGGACACGAAGTACTTTTTCGAGGCGAAAACGATTCAGAGAATGGAGATTTTGGTGCTCTCAGCTCTCCAGTGGCGGATGCATCCAGTCACACCACTTTCGTTCCTCGACCACATCATAAGAAGGCTCGGATTGAAAACCCACCTCCATTGGGAGTTCCTCAAGCGCTGCGAGCGTCTCCTTCTCTCGGTAGTCTTCGATTCGAGATTTGTCCGTTATTTGCCTTCTGTGTTGGCCACTGCAACAATGATGCGCGTTATAGACCAGGTCGAGCCTTGGAATGCCATTGAATACCAGAACCAGCTTCTTGGTGTTCTCAAAATAAGCAAGGAAAAAGTGAACCACTGTTACAGTCTGATACTCGACTATGATTACGCCTGCTGCAACAACAAAAACAGCACCAACAAACGCAAGCATGATCAAATCCCGGGCAGCCCAAGTGGGGTGATTGATGCATATTTCAGCTATGAAAGCTCAAATGATTCGTGGCCAGTGGGATCATCAGTTTCTTCATCCCCAGAAGCACTTTTCAAGAGGGCCAGAAAAGCAGAAGCAGAAGAGAAAGAGACGAAATTGGCCTCACTCAGCAGGCTCTTTGTGGGCACTGTTGGTAGCCCTCCTTAA

Protein Analysis

390

Amino Acids

44.51

Weight (kDa)

5.24

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 85 - 209 2.9e-27 Cyclin, N-terminal domain
Cyclin_C PF02984 212 - 319 9.8e-17 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 323, 801
AciI CCGC 3 cut(s) 321, 323, 622
AclWI GGATC 1 cut(s) 1051
AcoI YGGCCR 3 cut(s) 474, 780, 1034
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 2 cut(s) 465, 560
AfeI AGCGCT 1 cut(s) 713
AfiI CCNNNNNNNGG 7 cut(s) 345, 372, 493, 544, 697, 733, 988
AgsI TTSAA 4 cut(s) 542, 682, 836, 1078
AjnI CCWGG 1 cut(s) 810
AjuI GAANNNNNNNTTGG 2 cut(s) 160, 192
AluBI AGCT 7 cut(s) 232, 432, 469, 611, 850, 1011, 1020
AluI AGCT 7 cut(s) 232, 432, 469, 611, 850, 1011, 1020
Alw21I GWGCWC 1 cut(s) 606
Alw26I GTCTC 3 cut(s) 441, 728, 1106
AlwI GGATC 1 cut(s) 1051
Ama87I CYCGRG 1 cut(s) 973
Aor51HI AGCGCT 1 cut(s) 713
AoxI GGCC 5 cut(s) 474, 780, 1034, 1083, 1122
ApeKI GCWGC 4 cut(s) 497, 714, 927, 978
AspLEI GCGC 2 cut(s) 714, 801
AspS9I GGNCC 1 cut(s) 1083
AsuC2I CCSGG 2 cut(s) 974, 975
AsuHPI GGTGA 2 cut(s) 143, 1003
AvaI CYCGRG 1 cut(s) 973
BaeGI GKGCMC 1 cut(s) 1151
BalI TGGCCA 2 cut(s) 782, 1036
BbsI GAAGAC 1 cut(s) 733
Bbv12I GWGCWC 1 cut(s) 606
BbvI GCAGC 4 cut(s) 484, 701, 914, 990
BccI CCATC 3 cut(s) 92, 375, 454
BceAI ACGGC 4 cut(s) 315, 323, 386, 461
BciT130I CCWGG 1 cut(s) 812
BclI TGATCA 1 cut(s) 964
BcnI CCSGG 2 cut(s) 974, 975
BcoDI GTCTC 3 cut(s) 441, 728, 1106
BfaI CTAG 1 cut(s) 398
BfoI RGCGCY 1 cut(s) 715
BglII AGATCT 1 cut(s) 208
BisI GCNGC 5 cut(s) 324, 498, 715, 928, 979
BlsI GCNGC 5 cut(s) 325, 499, 716, 929, 980
BmcAI AGTACT 1 cut(s) 560
Bme1390I CCNGG 3 cut(s) 812, 974, 975
BmeT110I CYCGRG 1 cut(s) 973
BmgT120I GGNCC 1 cut(s) 1083
BmrFI CCNGG 3 cut(s) 812, 974, 975
BmsI GCATC 7 cut(s) 46, 325, 339, 615, 637, 786, 988
BpiI GAAGAC 1 cut(s) 733
BpmI CTGGAG 1 cut(s) 599
BpuEI CTTGAG 2 cut(s) 412, 692
BpuMI CCSGG 2 cut(s) 974, 975
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 5 cut(s) 249, 321, 455, 821, 973
BsaXI ACNNNNNCTCC 4 cut(s) 65, 93, 95, 123
Bsc4I CCNNNNNNNGG 7 cut(s) 345, 372, 493, 544, 697, 733, 988
Bse1I ACTGG 3 cut(s) 616, 632, 1037
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 812
BseDI CCNNGG 5 cut(s) 249, 321, 455, 821, 973
BseGI GGATG 7 cut(s) 61, 229, 354, 465, 628, 630, 1058
BseLI CCNNNNNNNGG 7 cut(s) 345, 372, 493, 544, 697, 733, 988
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 621, 1144
BseNI ACTGG 3 cut(s) 616, 632, 1037
BseRI GAGGAG 4 cut(s) 86, 101, 104, 269
BseSI GKGCMC 1 cut(s) 1151
BseXI GCAGC 4 cut(s) 484, 701, 914, 990
Bsh1236I CGCG 2 cut(s) 323, 801
Bsh1285I CGRYCG 1 cut(s) 418
BshFI GGCC 5 cut(s) 476, 782, 1036, 1085, 1124
BsiEI CGRYCG 1 cut(s) 418
BsiHKAI GWGCWC 1 cut(s) 606
BsiHKCI CYCGRG 1 cut(s) 973
BsiSI CCGG 1 cut(s) 974
BslI CCNNNNNNNGG 7 cut(s) 345, 372, 493, 544, 697, 733, 988
BsmAI GTCTC 3 cut(s) 441, 728, 1106
BsmBI CGTCTC 2 cut(s) 728, 1106
BsmI GAATGC 1 cut(s) 832
BsnI GGCC 5 cut(s) 476, 782, 1036, 1085, 1124
BsoBI CYCGRG 1 cut(s) 973
Bsp1286I GDGCHC 2 cut(s) 606, 1151
Bsp143I GATC 5 cut(s) 208, 315, 415, 964, 1043
BspACI CCGC 3 cut(s) 321, 323, 622
BspANI GGCC 5 cut(s) 476, 782, 1036, 1085, 1124
BspCNI CTCAG 2 cut(s) 620, 1143
BspFNI CGCG 2 cut(s) 323, 801
BspPI GGATC 1 cut(s) 1051
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 3 cut(s) 616, 632, 1037
BssECI CCNNGG 5 cut(s) 249, 321, 455, 821, 973
BssMI GATC 5 cut(s) 208, 315, 415, 964, 1043
BssNI GRCGYC 1 cut(s) 150
BssT1I CCWWGG 2 cut(s) 249, 821
Bst2UI CCWGG 1 cut(s) 812
Bst4CI ACNGT 4 cut(s) 456, 893, 899, 1153
Bst6I CTCTTC 1 cut(s) 1098
BstACI GRCGYC 1 cut(s) 150
BstC8I GCNNGC 5 cut(s) 328, 719, 925, 959, 1136
BstDEI CTNAG 2 cut(s) 607, 1130
BstDSI CCRYGG 2 cut(s) 321, 455
BstF5I GGATG 7 cut(s) 61, 229, 354, 465, 628, 630, 1058
BstFNI CGCG 2 cut(s) 323, 801
BstH2I RGCGCY 1 cut(s) 715
BstHHI GCGC 2 cut(s) 714, 801
BstKTI GATC 5 cut(s) 211, 318, 418, 967, 1046
BstMAI GTCTC 3 cut(s) 441, 728, 1106
BstMBI GATC 5 cut(s) 208, 315, 415, 964, 1043
BstMCI CGRYCG 1 cut(s) 418
BstMWI GCNNNNNNNGC 6 cut(s) 349, 389, 398, 718, 1017, 1091
BstNI CCWGG 1 cut(s) 812
BstSCI CCNGG 3 cut(s) 810, 972, 973
BstSLI GKGCMC 1 cut(s) 1151
BstUI CGCG 2 cut(s) 323, 801
BstV1I GCAGC 4 cut(s) 484, 701, 914, 990
BstV2I GAAGAC 1 cut(s) 733
BstX2I RGATCY 1 cut(s) 208
BstXI CCANNNNNNTGG 1 cut(s) 854
BstYI RGATCY 1 cut(s) 208
BsuRI GGCC 5 cut(s) 476, 782, 1036, 1085, 1124
BtgI CCRYGG 2 cut(s) 321, 455
BtsCI GGATG 7 cut(s) 61, 229, 354, 465, 628, 630, 1058
BtsI GCAGTG 2 cut(s) 387, 783
BtsIMutI CAGTG 7 cut(s) 160, 387, 623, 783, 889, 1044, 1149
Cac8I GCNNGC 5 cut(s) 328, 719, 925, 959, 1136
CfoI GCGC 2 cut(s) 714, 801
Cfr13I GGNCC 1 cut(s) 1083
Cfr42I CCGCGG 1 cut(s) 324
Cfr9I CCCGGG 1 cut(s) 973
CseI GACGC 3 cut(s) 139, 277, 710
CsiI ACCWGGT 1 cut(s) 810
Csp6I GTAC 2 cut(s) 464, 559
CspCI CAANNNNNGTGG 2 cut(s) 677, 712
CviAII CATG 3 cut(s) 286, 295, 962
CviQI GTAC 2 cut(s) 464, 559
DdeI CTNAG 2 cut(s) 607, 1130
DpnI GATC 5 cut(s) 210, 317, 417, 966, 1045
DpnII GATC 5 cut(s) 208, 315, 415, 964, 1043
EaeI YGGCCR 3 cut(s) 474, 780, 1034
Eam1104I CTCTTC 1 cut(s) 1098
EarI CTCTTC 1 cut(s) 1098
EciI GGCGGA 1 cut(s) 637
Eco130I CCWWGG 2 cut(s) 249, 821
Eco47III AGCGCT 1 cut(s) 713
Eco88I CYCGRG 1 cut(s) 973
EcoRII CCWGG 1 cut(s) 810
EcoT14I CCWWGG 2 cut(s) 249, 821
EcoT22I ATGCAT 2 cut(s) 630, 1003
ErhI CCWWGG 2 cut(s) 249, 821
Esp3I CGTCTC 2 cut(s) 728, 1106
FaeI CATG 3 cut(s) 289, 298, 965
FaiI YATR 9 cut(s) 42, 287, 296, 665, 806, 915, 963, 1003, 1014
FatI CATG 3 cut(s) 285, 294, 961
FbaI TGATCA 1 cut(s) 964
Fnu4HI GCNGC 5 cut(s) 324, 498, 715, 928, 979
FokI GGATG 7 cut(s) 68, 236, 361, 472, 615, 637, 1045
Fsp4HI GCNGC 5 cut(s) 324, 498, 715, 928, 979
FspBI CTAG 1 cut(s) 398
GlaI GCGC 2 cut(s) 713, 800
GluI GCNGC 5 cut(s) 324, 498, 715, 928, 979
GsuI CTGGAG 1 cut(s) 599
HaeII RGCGCY 1 cut(s) 715
HaeIII GGCC 5 cut(s) 476, 782, 1036, 1085, 1124
HapII CCGG 1 cut(s) 974
HgaI GACGC 3 cut(s) 139, 277, 710
HhaI GCGC 2 cut(s) 714, 801
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 3 cut(s) 289, 298, 965
Hin6I GCGC 2 cut(s) 712, 799
HinP1I GCGC 2 cut(s) 712, 799
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 430
HinfI GANTC 5 cut(s) 10, 308, 580, 746, 1028
HpaI GTTAAC 1 cut(s) 406
HpaII CCGG 1 cut(s) 974
HphI GGTGA 2 cut(s) 143, 1003
Hpy166II GTNNAC 4 cut(s) 361, 378, 406, 886
Hpy188I TCNGA 3 cut(s) 585, 677, 903
Hpy188III TCNNGA 4 cut(s) 14, 442, 750, 1078
Hpy8I GTNNAC 4 cut(s) 361, 378, 406, 886
HpyAV CCTTC 5 cut(s) 186, 548, 663, 737, 780
HpyCH4III ACNGT 4 cut(s) 456, 893, 899, 1153
HpyCH4V TGCA 5 cut(s) 392, 628, 788, 930, 1001
HpyF10VI GCNNNNNNNGC 6 cut(s) 349, 389, 398, 718, 1017, 1091
HpyF3I CTNAG 2 cut(s) 607, 1130
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 3 cut(s) 289, 298, 965
HspAI GCGC 2 cut(s) 712, 799
Ksp22I TGATCA 1 cut(s) 964
KspAI GTTAAC 1 cut(s) 406
KspI CCGCGG 1 cut(s) 324
Kzo9I GATC 5 cut(s) 208, 315, 415, 964, 1043
LmnI GCTCC 1 cut(s) 256
Lsp1109I GCAGC 4 cut(s) 484, 701, 914, 990
LweI GCATC 7 cut(s) 46, 325, 339, 615, 637, 786, 988
MabI ACCWGGT 1 cut(s) 810
MaeI CTAG 1 cut(s) 398
MaeIII GTNAC 3 cut(s) 478, 634, 893
MalI GATC 5 cut(s) 210, 317, 417, 966, 1045
MboI GATC 5 cut(s) 208, 315, 415, 964, 1043
MboII GAAGA 4 cut(s) 521, 733, 1047, 1115
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 2 cut(s) 606, 1151
MlsI TGGCCA 2 cut(s) 782, 1036
MluCI AATT 1 cut(s) 1118
MluNI TGGCCA 2 cut(s) 782, 1036
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 180
Mox20I TGGCCA 2 cut(s) 782, 1036
Mph1103I ATGCAT 2 cut(s) 630, 1003
MscI TGGCCA 2 cut(s) 782, 1036
MseI TTAA 2 cut(s) 405, 1168
Msp20I TGGCCA 2 cut(s) 782, 1036
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 1 cut(s) 974
MspR9I CCNGG 3 cut(s) 812, 974, 975
Mva1269I GAATGC 1 cut(s) 832
MvaI CCWGG 1 cut(s) 812
MvnI CGCG 2 cut(s) 323, 801
MwoI GCNNNNNNNGC 6 cut(s) 349, 389, 398, 718, 1017, 1091
NciI CCSGG 2 cut(s) 974, 975
NdeII GATC 5 cut(s) 208, 315, 415, 964, 1043
NlaIII CATG 3 cut(s) 289, 298, 965
NmuCI GTSAC 2 cut(s) 478, 634
NsiI ATGCAT 2 cut(s) 630, 1003
PctI GAATGC 1 cut(s) 832
PfeI GAWTC 4 cut(s) 10, 580, 746, 1028
PflFI GACNNNGTC 1 cut(s) 812
PkrI GCNGC 5 cut(s) 325, 499, 716, 929, 980
Ple19I CGATCG 1 cut(s) 418
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 810
PspGI CCWGG 1 cut(s) 810
PspPI GGNCC 1 cut(s) 1083
PsrI GAACNNNNNNTAC 2 cut(s) 878, 910
PsuI RGATCY 1 cut(s) 208
PsyI GACNNNGTC 1 cut(s) 812
PvuI CGATCG 1 cut(s) 418
RsaI GTAC 2 cut(s) 465, 560
RsaNI GTAC 2 cut(s) 464, 559
SacII CCGCGG 1 cut(s) 324
SaqAI TTAA 2 cut(s) 405, 1168
SatI GCNGC 5 cut(s) 324, 498, 715, 928, 979
Sau3AI GATC 5 cut(s) 208, 315, 415, 964, 1043
Sau96I GGNCC 1 cut(s) 1083
ScaI AGTACT 1 cut(s) 560
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 3 cut(s) 812, 974, 975
SduI GDGCHC 2 cut(s) 606, 1151
SexAI ACCWGGT 1 cut(s) 810
SfaNI GCATC 7 cut(s) 46, 325, 339, 615, 637, 786, 988
Sfr303I CCGCGG 1 cut(s) 324
SgrBI CCGCGG 1 cut(s) 324
SmaI CCCGGG 1 cut(s) 975
SmlI CTYRAG 2 cut(s) 427, 707
SmoI CTYRAG 2 cut(s) 427, 707
Sse9I AATT 1 cut(s) 1118
SsiI CCGC 3 cut(s) 321, 323, 622
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 3 cut(s) 810, 972, 973
StyI CCWWGG 2 cut(s) 249, 821
TaaI ACNGT 4 cut(s) 456, 893, 899, 1153
TaqI TCGA 7 cut(s) 414, 567, 654, 744, 749, 816, 909
TasI AATT 1 cut(s) 1118
TatI WGTACW 1 cut(s) 558
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 4 cut(s) 10, 580, 746, 1028
Tru1I TTAA 2 cut(s) 405, 1168
Tru9I TTAA 2 cut(s) 405, 1168
TscAI CASTG 7 cut(s) 160, 394, 623, 790, 896, 1044, 1156
TseFI GTSAC 2 cut(s) 478, 634
TseI GCWGC 4 cut(s) 497, 714, 927, 978
Tsp45I GTSAC 2 cut(s) 478, 634
TspDTI ATGAA 4 cut(s) 23, 412, 1029, 1047
TspGWI ACGGA 1 cut(s) 749
TspMI CCCGGG 1 cut(s) 973
TspRI CASTG 7 cut(s) 160, 394, 623, 790, 896, 1044, 1156
Tth111I GACNNNGTC 1 cut(s) 812
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmaI CCCGGG 1 cut(s) 973
XspI CTAG 1 cut(s) 398
ZrmI AGTACT 1 cut(s) 560
Zsp2I ATGCAT 2 cut(s) 630, 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.