Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Reverse (-)

69319264 .. 69322379

Gene Structure 3116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG489000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGAAGAAGATGGATCAGCCATTTCTCTTGGACGCTCTGTTCTGCTCGGAACAACATTTGGATGAGGAAGAGCAAGAAGCTACGGTGTTGGACTATTCAGAGGAATTTGTTGAAGATAGTTCTTTTTATAGCAACAACTCTTCGTCTTGTAAACAACAACAACAACCAATAAAGTCCCCAATCTTGCTAGAGCAAGACCTGTTCTGGGACGATGAGGAACTCACCTCTCTGTTGTCGAAAGAGAAACTGAATCAAGGTCGGAAAATCCTGAATCCCAACTCGTCTTTGGCCGGGGCTCGTAAGGAGGCTGTGGATTGGATGCTGAGGGTCAATGCCCACTACTCTTTCTCTGCTCTCACTGCGGTTCTGGCCGTCGATTACCTCGATAGGTTTTTCTTCAGCTTCCAATTTCAGACCGAGAAGCCATGGATGACACAGCTCGCTGCCGTGGCTTGTATCTCCCTTGCTGCAAAAGTGGAGGAGACCCAAGTCCCCTTATTACTAGACTTCCAAGTTGAGGACAGTAAGTATGTGTTCGAAGCTAAAACGATTAACCGAATGGAGATTTTGGTTCTCTCAACTCTTGATTGGAAGATGAATCCGGTGACCCCAATTTCGTTTCTTGATTACATGACAAGGAGGTTTGGTTTGAAAGACCATCTCTGCTGGGAATTCCTCAAGAGATGTGAGCTCATCCTTGTCAATCTCATCTCAGATTCTAGGTTCTTGTCTTTCCTTCCATCTGTAGTGGCTACGGCCACAATGCTGCACGTTGTCAATAACATTGAGCCTTGTCTTCAAGTTGAGTATGAAAACCAGCTCTTGACTATTCTCGGAATCGACAAGGGTTTGGCGGATGATTGCTCTAAGCTCATAATGGAATTGTCATCATCGTGGTCGAGAAACAAGCGCAAGTTTGGTTACTCAATTCCTGGGAGCCCAAATGGAGTCATTGACATATCATTCAGCTCGGACAGCTCAAATGACTCATGGGCCGTGGCCTCATCAGTCTCGTCCTCACCGGAACCTCTGTCCAAGAAAAGCAGGGCTCTGGAAAAGCAGCTTCTGGAGAAGCTCAACCAAACAGCAAATGCAGCAGCAGATATTCTCAGCCTTCCACGCCTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

376

Amino Acids

42.62

Weight (kDa)

4.8

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	97 - 200	2.2e-25	Cyclin, N-terminal domain
Cyclin_C	PF02984	202 - 303	4.5e-13	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	362, 854
AclWI	GGATC	1 cut(s)	21
AcoI	YGGCCR	3 cut(s)	288, 369, 756
AcsI	RAATTY	2 cut(s)	104, 671
AcuI	CTGAAG	1 cut(s)	382
AfiI	CCNNNNNNNGG	2 cut(s)	205, 517
AgsI	TTSAA	3 cut(s)	113, 652, 800
AjnI	CCWGG	1 cut(s)	931
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	2 cut(s)	476, 1015
AlwI	GGATC	1 cut(s)	21
AlwNI	CAGNNNCTG	1 cut(s)	1066
AoxI	GGCC	5 cut(s)	288, 369, 756, 993, 999
ApeKI	GCWGC	6 cut(s)	443, 467, 766, 1060, 1094, 1097
ApoI	RAATTY	2 cut(s)	104, 671
ArsI	GACNNNNNNTTYG	2 cut(s)	598, 630
AspLEI	GCGC	1 cut(s)	912
AspS9I	GGNCC	1 cut(s)	993
AsuC2I	CCSGG	1 cut(s)	292
AsuHPI	GGTGA	3 cut(s)	214, 616, 1011
AsuII	TTCGAA	1 cut(s)	537
BanII	GRGCYC	4 cut(s)	298, 693, 941, 1051
BbsI	GAAGAC	1 cut(s)	788
Bbv12I	GWGCWC	1 cut(s)	693
BbvCI	CCTCAGC	1 cut(s)	323
BbvI	GCAGC	6 cut(s)	430, 454, 753, 1072, 1106, 1109
BccI	CCATC	3 cut(s)	4, 666, 748
BceAI	ACGGC	4 cut(s)	356, 431, 771, 980
BciT130I	CCWGG	1 cut(s)	933
BcnI	CCSGG	1 cut(s)	292
BcoDI	GTCTC	2 cut(s)	476, 1015
BfaI	CTAG	3 cut(s)	188, 503, 720
BfmI	CTRYAG	1 cut(s)	744
BisI	GCNGC	6 cut(s)	444, 468, 767, 1061, 1095, 1098
BlsI	GCNGC	6 cut(s)	445, 469, 768, 1062, 1096, 1099
Bme1390I	CCNGG	2 cut(s)	292, 933
BmgT120I	GGNCC	1 cut(s)	993
BmiI	GGNNCC	2 cut(s)	938, 1026
BmrFI	CCNGG	2 cut(s)	292, 933
BmsI	GCATC	1 cut(s)	309
BoxI	GACNNNNGTC	1 cut(s)	488
BpiI	GAAGAC	1 cut(s)	788
BpmI	CTGGAG	1 cut(s)	1088
Bpu10I	CCTNAGC	1 cut(s)	323
Bpu14I	TTCGAA	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	662
BpuMI	CCSGG	1 cut(s)	292
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	5 cut(s)	291, 425, 447, 932, 996
BsaWI	WCCGGW	2 cut(s)	601, 1021
BsaXI	ACNNNNNCTCC	2 cut(s)	631, 661
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 517
BseBI	CCWGG	1 cut(s)	933
BseDI	CCNNGG	5 cut(s)	291, 425, 447, 932, 996
BseGI	GGATG	5 cut(s)	67, 324, 435, 693, 862
BseLI	CCNNNNNNNGG	2 cut(s)	205, 517
BseMII	CTCAG	3 cut(s)	314, 726, 1123
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	6 cut(s)	430, 454, 753, 1072, 1106, 1109
BseYI	CCCAGC	1 cut(s)	666
BsgI	GTGCAG	1 cut(s)	752
BshFI	GGCC	5 cut(s)	290, 371, 758, 995, 1001
BsiHKAI	GWGCWC	1 cut(s)	693
BsiSI	CCGG	3 cut(s)	291, 602, 1022
BslFI	GGGAC	3 cut(s)	160, 221, 476
BslI	CCNNNNNNNGG	2 cut(s)	205, 517
BsmAI	GTCTC	2 cut(s)	476, 1015
BsmFI	GGGAC	3 cut(s)	160, 221, 476
BsnI	GGCC	5 cut(s)	290, 371, 758, 995, 1001
Bso31I	GGTCTC	1 cut(s)	476
Bsp119I	TTCGAA	1 cut(s)	537
Bsp1286I	GDGCHC	4 cut(s)	298, 693, 941, 1051
Bsp143I	GATC	1 cut(s)	13
Bsp19I	CCATGG	1 cut(s)	425
BspACI	CCGC	2 cut(s)	362, 854
BspANI	GGCC	5 cut(s)	290, 371, 758, 995, 1001
BspCNI	CTCAG	3 cut(s)	315, 725, 1122
BspLI	GGNNCC	2 cut(s)	938, 1026
BspPI	GGATC	1 cut(s)	21
BspQI	GCTCTTC	1 cut(s)	63
BspT104I	TTCGAA	1 cut(s)	537
BspTNI	GGTCTC	1 cut(s)	476
BssECI	CCNNGG	5 cut(s)	291, 425, 447, 932, 996
BssMI	GATC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	425
Bst2UI	CCWGG	1 cut(s)	933
Bst4CI	ACNGT	2 cut(s)	85, 524
Bst6I	CTCTTC	2 cut(s)	63, 145
BstBI	TTCGAA	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	4 cut(s)	323, 712, 867, 1109
BstDSI	CCRYGG	3 cut(s)	425, 447, 996
BstEII	GGTNACC	1 cut(s)	604
BstF5I	GGATG	5 cut(s)	67, 324, 435, 693, 862
BstHHI	GCGC	1 cut(s)	912
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	2 cut(s)	476, 1015
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	6 cut(s)	359, 368, 449, 975, 1094, 1119
BstNI	CCWGG	1 cut(s)	933
BstPAI	GACNNNNGTC	1 cut(s)	488
BstPI	GGTNACC	1 cut(s)	604
BstSCI	CCNGG	2 cut(s)	290, 931
BstSFI	CTRYAG	1 cut(s)	744
BstV1I	GCAGC	6 cut(s)	430, 454, 753, 1072, 1106, 1109
BstV2I	GAAGAC	1 cut(s)	788
BsuRI	GGCC	5 cut(s)	290, 371, 758, 995, 1001
BtgI	CCRYGG	3 cut(s)	425, 447, 996
BtsCI	GGATG	5 cut(s)	67, 324, 435, 693, 862
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	1 cut(s)	441
CaiI	CAGNNNCTG	1 cut(s)	1066
CfoI	GCGC	1 cut(s)	912
Cfr13I	GGNCC	1 cut(s)	993
CseI	GACGC	1 cut(s)	41
CviAII	CATG	3 cut(s)	426, 631, 990
DdeI	CTNAG	4 cut(s)	323, 712, 867, 1109
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
EaeI	YGGCCR	3 cut(s)	288, 369, 756
Eam1104I	CTCTTC	2 cut(s)	63, 145
EarI	CTCTTC	2 cut(s)	63, 145
EciI	GGCGGA	1 cut(s)	869
Ecl136II	GAGCTC	1 cut(s)	691
Eco130I	CCWWGG	1 cut(s)	425
Eco24I	GRGCYC	4 cut(s)	298, 693, 941, 1051
Eco31I	GGTCTC	1 cut(s)	476
Eco53kI	GAGCTC	1 cut(s)	691
Eco57I	CTGAAG	1 cut(s)	382
Eco91I	GGTNACC	1 cut(s)	604
EcoICRI	GAGCTC	1 cut(s)	691
EcoO65I	GGTNACC	1 cut(s)	604
EcoRI	GAATTC	1 cut(s)	671
EcoRII	CCWGG	1 cut(s)	931
EcoT14I	CCWWGG	1 cut(s)	425
EcoT38I	GRGCYC	4 cut(s)	298, 693, 941, 1051
ErhI	CCWWGG	1 cut(s)	425
FaeI	CATG	3 cut(s)	429, 634, 993
FaiI	YATR	8 cut(s)	129, 427, 531, 632, 810, 875, 959, 991
FaqI	GGGAC	3 cut(s)	160, 221, 476
FatI	CATG	3 cut(s)	425, 630, 989
Fnu4HI	GCNGC	6 cut(s)	444, 468, 767, 1061, 1095, 1098
FokI	GGATG	5 cut(s)	74, 331, 442, 680, 869
FriOI	GRGCYC	4 cut(s)	298, 693, 941, 1051
Fsp4HI	GCNGC	6 cut(s)	444, 468, 767, 1061, 1095, 1098
FspBI	CTAG	3 cut(s)	188, 503, 720
GlaI	GCGC	1 cut(s)	911
GluI	GCNGC	6 cut(s)	444, 468, 767, 1061, 1095, 1098
GsaI	CCCAGC	1 cut(s)	670
GsuI	CTGGAG	1 cut(s)	1088
HaeIII	GGCC	5 cut(s)	290, 371, 758, 995, 1001
HapII	CCGG	3 cut(s)	291, 602, 1022
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	912
Hin1II	CATG	3 cut(s)	429, 634, 993
Hin6I	GCGC	1 cut(s)	910
HinP1I	GCGC	1 cut(s)	910
HinfI	GANTC	7 cut(s)	250, 271, 598, 716, 837, 948, 986
HpaII	CCGG	3 cut(s)	291, 602, 1022
HphI	GGTGA	3 cut(s)	214, 616, 1011
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	7 cut(s)	49, 100, 261, 414, 715, 836, 973
Hpy188III	TCNNGA	8 cut(s)	268, 584, 623, 679, 823, 900, 1052, 1067
Hpy8I	GTNNAC	1 cut(s)	152
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	2 cut(s)	746, 1124
HpyCH4III	ACNGT	2 cut(s)	85, 524
HpyCH4IV	ACGT	1 cut(s)	771
HpyCH4V	TGCA	3 cut(s)	470, 769, 1094
HpyF10VI	GCNNNNNNNGC	6 cut(s)	359, 368, 449, 975, 1094, 1119
HpyF3I	CTNAG	4 cut(s)	323, 712, 867, 1109
HpySE526I	ACGT	1 cut(s)	771
Hsp92II	CATG	3 cut(s)	429, 634, 993
HspAI	GCGC	1 cut(s)	910
Kzo9I	GATC	1 cut(s)	13
LguI	GCTCTTC	1 cut(s)	63
LmnI	GCTCC	1 cut(s)	936
Lsp1109I	GCAGC	6 cut(s)	430, 454, 753, 1072, 1106, 1109
LweI	GCATC	1 cut(s)	309
MaeI	CTAG	3 cut(s)	188, 503, 720
MaeII	ACGT	1 cut(s)	771
MaeIII	GTNAC	2 cut(s)	604, 920
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	8 cut(s)	16, 19, 80, 125, 132, 388, 604, 788
MhlI	GDGCHC	4 cut(s)	298, 693, 941, 1051
MluCI	AATT	6 cut(s)	104, 407, 612, 671, 881, 927
MlyI	GAGTC	2 cut(s)	957, 980
MmeI	TCCRAC	2 cut(s)	69, 239
MseI	TTAA	1 cut(s)	552
MslI	CAYNNNNRTG	2 cut(s)	60, 892
MspI	CCGG	3 cut(s)	291, 602, 1022
MspR9I	CCNGG	2 cut(s)	292, 933
MvaI	CCWGG	1 cut(s)	933
MwoI	GCNNNNNNNGC	6 cut(s)	359, 368, 449, 975, 1094, 1119
NciI	CCSGG	1 cut(s)	292
NcoI	CCATGG	1 cut(s)	425
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	3 cut(s)	429, 634, 993
NlaIV	GGNNCC	2 cut(s)	938, 1026
NmuCI	GTSAC	1 cut(s)	604
NspV	TTCGAA	1 cut(s)	537
PciSI	GCTCTTC	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PfeI	GAWTC	5 cut(s)	250, 271, 598, 716, 837
PkrI	GCNGC	6 cut(s)	445, 469, 768, 1062, 1096, 1099
PleI	GAGTC	2 cut(s)	956, 980
PpsI	GAGTC	2 cut(s)	956, 980
PshAI	GACNNNNGTC	1 cut(s)	488
Psp124BI	GAGCTC	1 cut(s)	693
Psp6I	CCWGG	1 cut(s)	931
PspEI	GGTNACC	1 cut(s)	604
PspFI	CCCAGC	1 cut(s)	666
PspGI	CCWGG	1 cut(s)	931
PspN4I	GGNNCC	2 cut(s)	938, 1026
PspPI	GGNCC	1 cut(s)	993
PstNI	CAGNNNCTG	1 cut(s)	1066
RseI	CAYNNNNRTG	2 cut(s)	60, 892
SacI	GAGCTC	1 cut(s)	693
SapI	GCTCTTC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	552
SatI	GCNGC	6 cut(s)	444, 468, 767, 1061, 1095, 1098
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	1 cut(s)	993
SchI	GAGTC	2 cut(s)	957, 980
ScrFI	CCNGG	2 cut(s)	292, 933
SduI	GDGCHC	4 cut(s)	298, 693, 941, 1051
SfaNI	GCATC	1 cut(s)	309
SfcI	CTRYAG	1 cut(s)	744
SfuI	TTCGAA	1 cut(s)	537
SmiMI	CAYNNNNRTG	2 cut(s)	60, 892
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	6 cut(s)	104, 407, 612, 671, 881, 927
SsiI	CCGC	2 cut(s)	362, 854
SspMI	CTAG	3 cut(s)	188, 503, 720
SstI	GAGCTC	1 cut(s)	693
StyD4I	CCNGG	2 cut(s)	290, 931
StyI	CCWWGG	1 cut(s)	425
TaaI	ACNGT	2 cut(s)	85, 524
TaiI	ACGT	1 cut(s)	774
TaqI	TCGA	6 cut(s)	236, 375, 384, 537, 840, 899
TaqII	GACCGA	1 cut(s)	431
TasI	AATT	6 cut(s)	104, 407, 612, 671, 881, 927
TfiI	GAWTC	5 cut(s)	250, 271, 598, 716, 837
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	6 cut(s)	443, 467, 766, 1060, 1094, 1097
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	3 cut(s)	17, 611, 825
TspRI	CASTG	1 cut(s)	364
XapI	RAATTY	2 cut(s)	104, 671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XspI	CTAG	3 cut(s)	188, 503, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.