MD10G1095900.v1.1

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
15015105 .. 15017127
2023 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1095900.v1.1.491

Sequence Viewer

Length: 1194 bp
ATGAATCACAACCAACACCGAAACCCACAAAGCCATTCACTTTTGCTGGATGCTTTGCTCTGTGAGGAGGACAAATGGGAGGAGCACGACGACGACCAAGGAGAAGTAGTGGAACAAGAAGTGAGTAGTGGTGAGAACTACAACAACGGCGTCAGTGGGAAAAACCCAAACTGCCCTTCTCTGTTTCCCATGCTCCTGTTGGAACAAGATCTGTTCTGGGAAGATGAGGAGCTTGTCTTTGTTTTTTCGAAAGAGGAGCTGCAACAGACGCATTTCGCCAAACACTTGGAGAGCTTGGGGAAAGAGGAGTCGTTGATCTCCATGGCTCGCCGTGAAGCGGTGCTGTGGATGCTCAAAGTGAATTCCCATTACGGGTTCACAGCCCTCACTGCAATCCTAGCAGTTAACTACTTTGATCGGTTCATCTCAAGCCTCCATTTCCAGGGAGACAAGCCGTGGATGGTCAAGCTTGTGGCCGTCACTTGCCTCTCTCTGGCTGCCAAAGTGGAAGAAACCCAAGTTCCTCTGCTTTTAGACCTTCAAGTGGAGGACACAAAGTACTTTTTCGAGGCGAAAACGATTCAGAGAATGGAGATTCTGGTGCTCTCAACTCTCCAATGGCGGATGCATCCAGTGACCCCACTTTCGTTTGTCGACCACATCTTAAGGAGGCTCGGATTGAAAACCCACCTCCATTGGGTGTTCCTCAAGCGCTGCGAGCGTCTCCTTCTCTCTGTAGTCGCCGATTCGAGATTCGTCGGTTATTTGCCTTCTGTGTTGGCCACTGCAACAATGATGTGCGTTATAGACCAGGTCGAGCCTTGGAATGCCATTGAATACCAGAACCAGCTTCTTGGTGTTCTCAAAATAAGCAAGGAAAAAGTGAACGACTGTTACAGTCAGATACTCGACTATGATTACGCTTGCAGCAACACCACAACCATCGCCACCGCCGCCACCGCCGCCACCGACAAACGCAAGCACGATCAAATCCCGGGCAGCCCAAGTGGAGTGATTGATGCATATTTCAGCTACGATGAAATCTCAAACGACTCGTGGGCACTGGGATCATCGGTTTCTTCGTCCCCAGAAGTACATTTCAAGAGGGCTAGAAATGCTGAAGCAGAAGAGAAAGAGATGAAATTGGCTTCACTCAATAGGCTCTTTGTGGGTATTATTAGTAGCCCACCTTAA

Protein Analysis

398

Amino Acids

45.17

Weight (kDa)

5.17

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 91 - 209 1.3e-25 Cyclin, N-terminal domain
Cyclin_C PF02984 212 - 308 2.3e-16 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 654
AciI CCGC 6 cut(s) 338, 622, 951, 954, 960, 963
AclWI GGATC 1 cut(s) 1075
AcoI YGGCCR 2 cut(s) 474, 780
AcsI RAATTY 1 cut(s) 361
AcuI CTGAAG 1 cut(s) 1140
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 2 cut(s) 560, 1095
AfeI AGCGCT 1 cut(s) 713
AfiI CCNNNNNNNGG 6 cut(s) 337, 372, 442, 493, 544, 697
AflII CTTAAG 1 cut(s) 664
AgsI TTSAA 4 cut(s) 542, 682, 836, 1102
AjnI CCWGG 2 cut(s) 441, 810
AjuI GAANNNNNNNTTGG 2 cut(s) 160, 192
AluBI AGCT 6 cut(s) 232, 259, 294, 469, 850, 1032
AluI AGCT 6 cut(s) 232, 259, 294, 469, 850, 1032
Alw21I GWGCWC 2 cut(s) 87, 606
Alw26I GTCTC 2 cut(s) 441, 728
AlwI GGATC 1 cut(s) 1075
Ama87I CYCGRG 1 cut(s) 994
Aor51HI AGCGCT 1 cut(s) 713
AoxI GGCC 2 cut(s) 474, 780
ApeKI GCWGC 5 cut(s) 259, 497, 714, 927, 999
ApoI RAATTY 1 cut(s) 361
ArsI GACNNNNNNTTYG 2 cut(s) 628, 660
AspLEI GCGC 1 cut(s) 714
AsuC2I CCSGG 2 cut(s) 995, 996
AsuHPI GGTGA 1 cut(s) 143
AsuII TTCGAA 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 994
BaeGI GKGCMC 1 cut(s) 1063
BalI TGGCCA 1 cut(s) 782
BauI CACGAG 1 cut(s) 1054
Bbv12I GWGCWC 2 cut(s) 87, 606
BbvI GCAGC 5 cut(s) 246, 484, 701, 939, 1011
BccI CCATC 2 cut(s) 454, 950
BceAI ACGGC 4 cut(s) 163, 315, 439, 461
BciT130I CCWGG 2 cut(s) 443, 812
BcnI CCSGG 2 cut(s) 995, 996
BcoDI GTCTC 2 cut(s) 441, 728
BfaI CTAG 2 cut(s) 398, 1110
BfmI CTRYAG 1 cut(s) 735
BfoI RGCGCY 1 cut(s) 715
BfrI CTTAAG 1 cut(s) 664
BglII AGATCT 1 cut(s) 208
BisI GCNGC 7 cut(s) 260, 498, 715, 928, 954, 963, 1000
BlsI GCNGC 7 cut(s) 261, 499, 716, 929, 955, 964, 1001
BmcAI AGTACT 1 cut(s) 560
Bme1390I CCNGG 4 cut(s) 443, 812, 995, 996
BmeT110I CYCGRG 1 cut(s) 994
BmrFI CCNGG 4 cut(s) 443, 812, 995, 996
BmrI ACTGGG 1 cut(s) 1073
BmsI GCATC 5 cut(s) 40, 339, 615, 637, 1009
BmuI ACTGGG 1 cut(s) 1073
Bpu14I TTCGAA 1 cut(s) 248
BpuEI CTTGAG 2 cut(s) 412, 692
BpuMI CCSGG 2 cut(s) 995, 996
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 6 cut(s) 97, 321, 442, 455, 821, 994
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 6 cut(s) 337, 372, 442, 493, 544, 697
Bse1I ACTGG 2 cut(s) 632, 1068
BseBI CCWGG 2 cut(s) 443, 812
BseDI CCNNGG 6 cut(s) 97, 321, 442, 455, 821, 994
BseGI GGATG 5 cut(s) 55, 354, 465, 628, 630
BseLI CCNNNNNNNGG 6 cut(s) 337, 372, 442, 493, 544, 697
BseNI ACTGG 2 cut(s) 632, 1068
BseRI GAGGAG 5 cut(s) 80, 95, 242, 269, 320
BseSI GKGCMC 1 cut(s) 1063
BseXI GCAGC 5 cut(s) 246, 484, 701, 939, 1011
BshFI GGCC 2 cut(s) 476, 782
BsiHKAI GWGCWC 2 cut(s) 87, 606
BsiHKCI CYCGRG 1 cut(s) 994
BsiSI CCGG 1 cut(s) 995
BslFI GGGAC 1 cut(s) 1069
BslI CCNNNNNNNGG 6 cut(s) 337, 372, 442, 493, 544, 697
BsmAI GTCTC 2 cut(s) 441, 728
BsmBI CGTCTC 1 cut(s) 728
BsmFI GGGAC 1 cut(s) 1069
BsmI GAATGC 1 cut(s) 832
BsnI GGCC 2 cut(s) 476, 782
BsoBI CYCGRG 1 cut(s) 994
Bsp119I TTCGAA 1 cut(s) 248
Bsp1286I GDGCHC 3 cut(s) 87, 606, 1063
Bsp143I GATC 5 cut(s) 208, 315, 415, 985, 1067
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 6 cut(s) 338, 622, 951, 954, 960, 963
BspANI GGCC 2 cut(s) 476, 782
BspPI GGATC 1 cut(s) 1075
BspT104I TTCGAA 1 cut(s) 248
BspTI CTTAAG 1 cut(s) 664
BsrI ACTGG 2 cut(s) 632, 1068
BssECI CCNNGG 6 cut(s) 97, 321, 442, 455, 821, 994
BssMI GATC 5 cut(s) 208, 315, 415, 985, 1067
BssNI GRCGYC 1 cut(s) 150
BssSI CACGAG 1 cut(s) 1054
BssT1I CCWWGG 3 cut(s) 97, 321, 821
Bst2BI CACGAG 1 cut(s) 1054
Bst2UI CCWGG 2 cut(s) 443, 812
Bst4CI ACNGT 2 cut(s) 893, 899
Bst6I CTCTTC 1 cut(s) 1122
BstACI GRCGYC 1 cut(s) 150
BstAFI CTTAAG 1 cut(s) 664
BstBI TTCGAA 1 cut(s) 248
BstC8I GCNNGC 4 cut(s) 328, 719, 925, 980
BstDSI CCRYGG 2 cut(s) 321, 455
BstF5I GGATG 5 cut(s) 55, 354, 465, 628, 630
BstH2I RGCGCY 1 cut(s) 715
BstHHI GCGC 1 cut(s) 714
BstKTI GATC 5 cut(s) 211, 318, 418, 988, 1070
BstMAI GTCTC 2 cut(s) 441, 728
BstMBI GATC 5 cut(s) 208, 315, 415, 985, 1067
BstMWI GCNNNNNNNGC 9 cut(s) 268, 349, 389, 398, 718, 953, 959, 962, 1115
BstNI CCWGG 2 cut(s) 443, 812
BstSCI CCNGG 4 cut(s) 441, 810, 993, 994
BstSFI CTRYAG 1 cut(s) 735
BstSLI GKGCMC 1 cut(s) 1063
BstV1I GCAGC 5 cut(s) 246, 484, 701, 939, 1011
BstX2I RGATCY 1 cut(s) 208
BstXI CCANNNNNNTGG 2 cut(s) 286, 854
BstYI RGATCY 1 cut(s) 208
BsuRI GGCC 2 cut(s) 476, 782
BtgI CCRYGG 2 cut(s) 321, 455
BtgZI GCGATG 1 cut(s) 928
BtsCI GGATG 5 cut(s) 55, 354, 465, 628, 630
BtsI GCAGTG 2 cut(s) 387, 783
BtsIMutI CAGTG 5 cut(s) 160, 387, 639, 783, 1061
Cac8I GCNNGC 4 cut(s) 328, 719, 925, 980
CfoI GCGC 1 cut(s) 714
Cfr9I CCCGGG 1 cut(s) 994
CseI GACGC 3 cut(s) 139, 277, 710
CsiI ACCWGGT 1 cut(s) 810
Csp6I GTAC 2 cut(s) 559, 1094
CspCI CAANNNNNGTGG 2 cut(s) 677, 712
CviAII CATG 2 cut(s) 190, 322
CviQI GTAC 2 cut(s) 559, 1094
DpnI GATC 5 cut(s) 210, 317, 417, 987, 1069
DpnII GATC 5 cut(s) 208, 315, 415, 985, 1067
EaeI YGGCCR 2 cut(s) 474, 780
Eam1104I CTCTTC 1 cut(s) 1122
EarI CTCTTC 1 cut(s) 1122
EciI GGCGGA 1 cut(s) 637
Eco130I CCWWGG 3 cut(s) 97, 321, 821
Eco47III AGCGCT 1 cut(s) 713
Eco57I CTGAAG 1 cut(s) 1140
Eco88I CYCGRG 1 cut(s) 994
EcoRI GAATTC 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 441, 810
EcoT14I CCWWGG 3 cut(s) 97, 321, 821
EcoT22I ATGCAT 2 cut(s) 630, 1024
ErhI CCWWGG 3 cut(s) 97, 321, 821
Esp3I CGTCTC 1 cut(s) 728
FaeI CATG 2 cut(s) 193, 325
FaiI YATR 5 cut(s) 191, 323, 806, 915, 1024
FaqI GGGAC 1 cut(s) 1069
FatI CATG 2 cut(s) 189, 321
FblI GTMKAC 1 cut(s) 654
Fnu4HI GCNGC 7 cut(s) 260, 498, 715, 928, 954, 963, 1000
FokI GGATG 5 cut(s) 62, 361, 472, 615, 637
Fsp4HI GCNGC 7 cut(s) 260, 498, 715, 928, 954, 963, 1000
FspBI CTAG 2 cut(s) 398, 1110
GlaI GCGC 1 cut(s) 713
GluI GCNGC 7 cut(s) 260, 498, 715, 928, 954, 963, 1000
HaeII RGCGCY 1 cut(s) 715
HaeIII GGCC 2 cut(s) 476, 782
HapII CCGG 1 cut(s) 995
HgaI GACGC 3 cut(s) 139, 277, 710
HhaI GCGC 1 cut(s) 714
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 2 cut(s) 193, 325
Hin6I GCGC 1 cut(s) 712
HinP1I GCGC 1 cut(s) 712
HincII GTYRAC 2 cut(s) 406, 655
HindII GTYRAC 2 cut(s) 406, 655
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 7 cut(s) 4, 308, 580, 595, 746, 753, 1052
HpaI GTTAAC 1 cut(s) 406
HpaII CCGG 1 cut(s) 995
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 4 cut(s) 378, 406, 655, 886
Hpy188I TCNGA 3 cut(s) 585, 677, 903
Hpy188III TCNNGA 2 cut(s) 750, 1102
Hpy8I GTNNAC 4 cut(s) 378, 406, 655, 886
Hpy99I CGWCG 3 cut(s) 92, 95, 761
HpyAV CCTTC 4 cut(s) 186, 548, 737, 780
HpyCH4III ACNGT 2 cut(s) 893, 899
HpyCH4V TGCA 6 cut(s) 262, 392, 628, 788, 927, 1022
HpyF10VI GCNNNNNNNGC 9 cut(s) 268, 349, 389, 398, 718, 953, 959, 962, 1115
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 2 cut(s) 193, 325
HspAI GCGC 1 cut(s) 712
KspAI GTTAAC 1 cut(s) 406
Kzo9I GATC 5 cut(s) 208, 315, 415, 985, 1067
LmnI GCTCC 4 cut(s) 82, 198, 229, 256
Lsp1109I GCAGC 5 cut(s) 246, 484, 701, 939, 1011
LweI GCATC 5 cut(s) 40, 339, 615, 637, 1009
MabI ACCWGGT 1 cut(s) 810
MaeI CTAG 2 cut(s) 398, 1110
MaeIII GTNAC 3 cut(s) 478, 634, 893
MalI GATC 5 cut(s) 210, 317, 417, 987, 1069
MboI GATC 5 cut(s) 208, 315, 415, 985, 1067
MboII GAAGA 4 cut(s) 233, 521, 1071, 1139
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 3 cut(s) 87, 606, 1063
MlsI TGGCCA 1 cut(s) 782
MluCI AATT 2 cut(s) 361, 1142
MluNI TGGCCA 1 cut(s) 782
MlyI GAGTC 2 cut(s) 317, 1046
MmeI TCCRAC 1 cut(s) 180
Mox20I TGGCCA 1 cut(s) 782
Mph1103I ATGCAT 2 cut(s) 630, 1024
MscI TGGCCA 1 cut(s) 782
MseI TTAA 3 cut(s) 405, 665, 1192
Msp20I TGGCCA 1 cut(s) 782
MspCI CTTAAG 1 cut(s) 664
MspI CCGG 1 cut(s) 995
MspR9I CCNGG 4 cut(s) 443, 812, 995, 996
Mva1269I GAATGC 1 cut(s) 832
MvaI CCWGG 2 cut(s) 443, 812
MwoI GCNNNNNNNGC 9 cut(s) 268, 349, 389, 398, 718, 953, 959, 962, 1115
NciI CCSGG 2 cut(s) 995, 996
NcoI CCATGG 1 cut(s) 321
NdeII GATC 5 cut(s) 208, 315, 415, 985, 1067
NlaIII CATG 2 cut(s) 193, 325
NmuCI GTSAC 2 cut(s) 478, 634
NsiI ATGCAT 2 cut(s) 630, 1024
NspV TTCGAA 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 1079
PctI GAATGC 1 cut(s) 832
PfeI GAWTC 5 cut(s) 4, 580, 595, 746, 753
PflFI GACNNNGTC 1 cut(s) 812
PkrI GCNGC 7 cut(s) 261, 499, 716, 929, 955, 964, 1001
PleI GAGTC 2 cut(s) 316, 1046
PpsI GAGTC 2 cut(s) 316, 1046
Psp6I CCWGG 2 cut(s) 441, 810
PspGI CCWGG 2 cut(s) 441, 810
PsrI GAACNNNNNNTAC 2 cut(s) 878, 910
PsuI RGATCY 1 cut(s) 208
PsyI GACNNNGTC 1 cut(s) 812
RsaI GTAC 2 cut(s) 560, 1095
RsaNI GTAC 2 cut(s) 559, 1094
SalI GTCGAC 1 cut(s) 653
SaqAI TTAA 3 cut(s) 405, 665, 1192
SatI GCNGC 7 cut(s) 260, 498, 715, 928, 954, 963, 1000
Sau3AI GATC 5 cut(s) 208, 315, 415, 985, 1067
ScaI AGTACT 1 cut(s) 560
SchI GAGTC 2 cut(s) 317, 1046
ScrFI CCNGG 4 cut(s) 443, 812, 995, 996
SduI GDGCHC 3 cut(s) 87, 606, 1063
SexAI ACCWGGT 1 cut(s) 810
SfaNI GCATC 5 cut(s) 40, 339, 615, 637, 1009
SfcI CTRYAG 1 cut(s) 735
SfuI TTCGAA 1 cut(s) 248
SmaI CCCGGG 1 cut(s) 996
SmlI CTYRAG 3 cut(s) 427, 664, 707
SmoI CTYRAG 3 cut(s) 427, 664, 707
Sse9I AATT 2 cut(s) 361, 1142
SsiI CCGC 6 cut(s) 338, 622, 951, 954, 960, 963
SspMI CTAG 2 cut(s) 398, 1110
StyD4I CCNGG 4 cut(s) 441, 810, 993, 994
StyI CCWWGG 3 cut(s) 97, 321, 821
TaaI ACNGT 2 cut(s) 893, 899
TaqI TCGA 6 cut(s) 248, 567, 654, 749, 816, 909
TasI AATT 2 cut(s) 361, 1142
TatI WGTACW 2 cut(s) 558, 1093
TauI GCSGC 2 cut(s) 956, 965
TfiI GAWTC 5 cut(s) 4, 580, 595, 746, 753
Tru1I TTAA 3 cut(s) 405, 665, 1192
Tru9I TTAA 3 cut(s) 405, 665, 1192
TscAI CASTG 5 cut(s) 160, 394, 639, 790, 1068
TseFI GTSAC 2 cut(s) 478, 634
TseI GCWGC 5 cut(s) 259, 497, 714, 927, 999
Tsp45I GTSAC 2 cut(s) 478, 634
TspDTI ATGAA 4 cut(s) 17, 412, 1053, 1154
TspMI CCCGGG 1 cut(s) 994
TspRI CASTG 5 cut(s) 160, 394, 639, 790, 1068
Tth111I GACNNNGTC 1 cut(s) 812
Vha464I CTTAAG 1 cut(s) 664
XapI RAATTY 1 cut(s) 361
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmaI CCCGGG 1 cut(s) 994
XmiI GTMKAC 1 cut(s) 654
XspI CTAG 2 cut(s) 398, 1110
ZrmI AGTACT 1 cut(s) 560
Zsp2I ATGCAT 2 cut(s) 630, 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.