Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003529

Physical Location & Seq

Genomic Coordinates Reverse (-)

5268692 .. 5270861

Gene Structure 2170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1077100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGATCGAAAACATCATCATCAAGCAGTAGAATCAAGTGAAGAACAAAACCCAGTTTTCCTTTTGGACGCTCTGTACTGCTCCGAAGAGCATTTGGTGGATGAGCAAGTGAGCGCAGTGGATTATTTCCCAGAAGAGGAATTAGTAGAAGATAGTTTTTACAGCAATGTTTCGTCGTTTAAACCAATAAAAGCTCCAATCTTTGTCGAGCAAGACCTGTTTTGGGACAATGAGGAGCTAATGTCTCTGTTATCCAAAGAATCAGAGCAAAACGAGCTCCAGAAACCCCTCCAAATCAGCCCCTCTCTGGCCGGAGCTCGCAGAGAGGCGGTGGATTGGATGCTGAGAGTCACTTCCCACTACTCTTTCTCCGCCCTCACGGCGGTGCTCGCGGCGGATTACTTCGACAGGTTCTTATCCAGCCTCCAGCTTCAGGTTGAGAAGCCGTGGATGACTCAGCTCGCTGCGGTGGCATGTATCTCTCTTGCTGCCAAAGTTGAGGAGACCCAAGTCCCCCTTTTGCAGGATTTCCAAGTGGAGGATAGTAAGTATGTGTTTGAAGATAGAACAATCAAACGAATGGAGATTTTGGTGCTCTCAACTCTCCAATGGAAGATGAATCCTGTCACTCCGATTTCGTTCATCGATTACATCACCCGAAGACTCGGTCTGAAAAACCATCTCTGTTGGGAATTCCTCAAGAGATGTGAGCTCATCCTTCTGAATCTAATTTCAGATTCTAGGTTCATGTCTTTCCTTCCATCTGTAGTTGCCACTGCCACAATGCTGCACGTTGTCAATAACATAGAACCGTGTCTACTAATCGAATACCAAACTCAGCTCTTGGGAATTCTGGGCATCAATAAGGACAAAGTGGATGATTGCTGTAAGCTCATATCGGAATTAACATCTTCCGGAGGCAAAGGCAATGGCAACCAATCCAACAAGCGTAAGTTTGGTTCAGTTCCAAGCAGTCCCAATGGAGTGATGGATGTGTCATTTAGCTCTGATAGCTCGAATGATTCGTGGGCCGTTGGATCATCAGTCTCATCCTCGCCGGAGCCTCTGTCGAAGAAGAGGAAGCTCAACCAGAACCCTAATGCAGATATCCTCAGCATCATCCCTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0061458 GO:0090558 GO:0090627 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

377

Amino Acids

42.45

Weight (kDa)

4.94

Isoelectric Point (pI)

59.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	83 - 207	2.9e-26	Cyclin, N-terminal domain
Cyclin_C	PF02984	209 - 321	4.9e-16	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34160
fragaria_vesca	FvH4_2g05460 FvH4_2g33760 FvH4_2g33760
malus_domestica	MD05G1087300.v1.1 MD08G1092900.v1.1 MD10G1095900.v1.1 MD15G1077100.v1.1
prunus_persica	Prupe.1G430500_v2.0.a1 Prupe.1G430500_v2.0.a1 Prupe.8G131900_v2.0.a1
pyrus_communis	pycom05g08680 pycom08g07550 pycom15g07180
rosa_chinensis	RchiOBHm_Chr6g0255741 RchiOBHm_Chr6g0308791
rosa_laevigata	RLG00000010618 RLG00000014817 RLG00000030143
rosa_multiflora	Rmu_co8197358.1_g000001 Rmu_sc0004046.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159920 Rroxscaffold_7G00209710
rosa_rugosa	Rorug05G0560900 Rorug06G0368300
rosa_samantha	Rh6AG079000 Rh6AG479500 Rh6BG072100 Rh6BG489000 Rh6CG070200 Rh6CG494500 Rh6DG067400 Rh6DG479800
rosa_wichuraiana	Rw6G006810 Rw6G041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	817
AccII	CGCG	1 cut(s)	392
AccIII	TCCGGA	1 cut(s)	914
AciI	CCGC	6 cut(s)	329, 372, 383, 392, 395, 467
AclWI	GGATC	2 cut(s)	12, 1045
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	2 cut(s)	692, 849
AcuI	CTGAAG	1 cut(s)	416
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	7 cut(s)	136, 223, 307, 382, 433, 523, 538
AgsI	TTSAA	1 cut(s)	560
AleI	CACNNNNGTG	1 cut(s)	383
Alw21I	GWGCWC	5 cut(s)	279, 319, 390, 597, 714
Alw26I	GTCTC	3 cut(s)	249, 497, 1051
AlwI	GGATC	2 cut(s)	12, 1045
Aor13HI	TCCGGA	1 cut(s)	914
AoxI	GGCC	2 cut(s)	309, 1029
ApeKI	GCWGC	3 cut(s)	464, 488, 787
ApoI	RAATTY	2 cut(s)	692, 849
ArsI	GACNNNNNNTTYG	2 cut(s)	652, 684
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	1029
AsuHPI	GGTGA	1 cut(s)	646
BanII	GRGCYC	3 cut(s)	279, 319, 714
BbsI	GAAGAC	1 cut(s)	667
Bbv12I	GWGCWC	5 cut(s)	279, 319, 390, 597, 714
BbvCI	CCTCAGC	1 cut(s)	1112
BbvI	GCAGC	3 cut(s)	451, 475, 774
BccI	CCATC	3 cut(s)	687, 769, 982
BceAI	ACGGC	3 cut(s)	396, 430, 1016
BcoDI	GTCTC	3 cut(s)	249, 497, 1051
BfaI	CTAG	2 cut(s)	741, 1129
BfmI	CTRYAG	1 cut(s)	765
BglI	GCCNNNNNGGC	1 cut(s)	380
BisI	GCNGC	4 cut(s)	393, 465, 489, 788
BlsI	GCNGC	4 cut(s)	394, 466, 490, 789
BmgT120I	GGNCC	1 cut(s)	1029
BmiI	GGNNCC	1 cut(s)	1062
BmrI	ACTGGG	1 cut(s)	47
BmsI	GCATC	3 cut(s)	330, 867, 1125
BmuI	ACTGGG	1 cut(s)	47
BoxI	GACNNNNGTC	1 cut(s)	509
BpiI	GAAGAC	1 cut(s)	667
BpmI	CTGGAG	2 cut(s)	263, 410
Bpu10I	CCTNAGC	1 cut(s)	1112
BpuEI	CTTGAG	1 cut(s)	683
Bsa29I	ATCGAT	1 cut(s)	645
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	446
BsaWI	WCCGGW	1 cut(s)	914
BsaXI	ACNNNNNCTCC	6 cut(s)	227, 257, 353, 383, 1052, 1082
Bsc4I	CCNNNNNNNGG	7 cut(s)	136, 223, 307, 382, 433, 523, 538
Bse1I	ACTGG	1 cut(s)	53
Bse3DI	GCAATG	2 cut(s)	172, 934
BseAI	TCCGGA	1 cut(s)	914
BseCI	ATCGAT	1 cut(s)	645
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	8 cut(s)	106, 345, 456, 714, 883, 997, 1049, 1119
BseLI	CCNNNNNNNGG	7 cut(s)	136, 223, 307, 382, 433, 523, 538
BseMI	GCAATG	2 cut(s)	172, 934
BseMII	CTCAG	4 cut(s)	335, 470, 851, 1126
BseNI	ACTGG	1 cut(s)	53
BseRI	GAGGAG	2 cut(s)	248, 515
BseXI	GCAGC	3 cut(s)	451, 475, 774
BsgI	GTGCAG	1 cut(s)	773
Bsh1236I	CGCG	1 cut(s)	392
BshFI	GGCC	2 cut(s)	311, 1031
BshVI	ATCGAT	1 cut(s)	645
BsiHKAI	GWGCWC	5 cut(s)	279, 319, 390, 597, 714
BsiSI	CCGG	3 cut(s)	312, 915, 1058
BslFI	GGGAC	3 cut(s)	239, 497, 960
BslI	CCNNNNNNNGG	7 cut(s)	136, 223, 307, 382, 433, 523, 538
BsmAI	GTCTC	3 cut(s)	249, 497, 1051
BsmFI	GGGAC	3 cut(s)	239, 497, 960
BsnI	GGCC	2 cut(s)	311, 1031
Bso31I	GGTCTC	1 cut(s)	497
Bsp1286I	GDGCHC	5 cut(s)	279, 319, 390, 597, 714
Bsp13I	TCCGGA	1 cut(s)	914
Bsp143I	GATC	2 cut(s)	4, 1037
BspACI	CCGC	6 cut(s)	329, 372, 383, 392, 395, 467
BspANI	GGCC	2 cut(s)	311, 1031
BspCNI	CTCAG	4 cut(s)	336, 469, 850, 1125
BspDI	ATCGAT	1 cut(s)	645
BspEI	TCCGGA	1 cut(s)	914
BspFNI	CGCG	1 cut(s)	392
BspLI	GGNNCC	1 cut(s)	1062
BspPI	GGATC	2 cut(s)	12, 1045
BspQI	GCTCTTC	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	497
BsrDI	GCAATG	2 cut(s)	172, 934
BsrI	ACTGG	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	2 cut(s)	4, 1037
Bst4CI	ACNGT	1 cut(s)	813
Bst6I	CTCTTC	3 cut(s)	81, 129, 1070
BstC8I	GCNNGC	3 cut(s)	319, 390, 462
BstDEI	CTNAG	4 cut(s)	344, 456, 837, 1112
BstDSI	CCRYGG	1 cut(s)	446
BstENI	CCTNNNNNAGG	1 cut(s)	521
BstF5I	GGATG	8 cut(s)	106, 345, 456, 714, 883, 997, 1049, 1119
BstFNI	CGCG	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	2 cut(s)	7, 1040
BstMAI	GTCTC	3 cut(s)	249, 497, 1051
BstMBI	GATC	2 cut(s)	4, 1037
BstMWI	GCNNNNNNNGC	5 cut(s)	274, 380, 389, 470, 1011
BstNSI	RCATGY	1 cut(s)	477
BstPAI	GACNNNNGTC	1 cut(s)	509
BstSFI	CTRYAG	1 cut(s)	765
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	3 cut(s)	451, 475, 774
BstV2I	GAAGAC	1 cut(s)	667
Bsu15I	ATCGAT	1 cut(s)	645
BsuRI	GGCC	2 cut(s)	311, 1031
BsuTUI	ATCGAT	1 cut(s)	645
BtgI	CCRYGG	1 cut(s)	446
BtsCI	GGATG	8 cut(s)	106, 345, 456, 714, 883, 997, 1049, 1119
BtsI	GCAGTG	2 cut(s)	123, 774
BtsIMutI	CAGTG	2 cut(s)	123, 774
Cac8I	GCNNGC	3 cut(s)	319, 390, 462
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	1029
ClaI	ATCGAT	1 cut(s)	645
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	2 cut(s)	474, 748
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	4 cut(s)	344, 456, 837, 1112
DpnI	GATC	2 cut(s)	6, 1039
DpnII	GATC	2 cut(s)	4, 1037
DraI	TTTAAA	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	3 cut(s)	81, 129, 1070
EarI	CTCTTC	3 cut(s)	81, 129, 1070
EciI	GGCGGA	2 cut(s)	361, 410
Ecl136II	GAGCTC	3 cut(s)	277, 317, 712
Eco24I	GRGCYC	3 cut(s)	279, 319, 714
Eco31I	GGTCTC	1 cut(s)	497
Eco32I	GATATC	1 cut(s)	1108
Eco53kI	GAGCTC	3 cut(s)	277, 317, 712
Eco57I	CTGAAG	1 cut(s)	416
EcoICRI	GAGCTC	3 cut(s)	277, 317, 712
EcoNI	CCTNNNNNAGG	1 cut(s)	521
EcoRI	GAATTC	2 cut(s)	692, 849
EcoRV	GATATC	1 cut(s)	1108
EcoT38I	GRGCYC	3 cut(s)	279, 319, 714
FaeI	CATG	2 cut(s)	477, 751
FaiI	YATR	5 cut(s)	475, 552, 749, 806, 896
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FaqI	GGGAC	3 cut(s)	239, 497, 960
FatI	CATG	2 cut(s)	473, 747
FblI	GTMKAC	1 cut(s)	817
Fnu4HI	GCNGC	4 cut(s)	393, 465, 489, 788
FokI	GGATG	8 cut(s)	113, 352, 463, 701, 890, 1004, 1036, 1106
FriOI	GRGCYC	3 cut(s)	279, 319, 714
Fsp4HI	GCNGC	4 cut(s)	393, 465, 489, 788
FspBI	CTAG	2 cut(s)	741, 1129
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	4 cut(s)	393, 465, 489, 788
GsuI	CTGGAG	2 cut(s)	263, 410
HaeIII	GGCC	2 cut(s)	311, 1031
HapII	CCGG	3 cut(s)	312, 915, 1058
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	2 cut(s)	477, 751
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HinfI	GANTC	9 cut(s)	32, 260, 348, 454, 619, 663, 724, 737, 1022
HpaII	CCGG	3 cut(s)	312, 915, 1058
HphI	GGTGA	1 cut(s)	646
Hpy166II	GTNNAC	1 cut(s)	818
Hpy188I	TCNGA	8 cut(s)	85, 265, 633, 672, 723, 736, 901, 1009
Hpy188III	TCNNGA	3 cut(s)	280, 700, 915
Hpy8I	GTNNAC	1 cut(s)	818
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	2 cut(s)	728, 767
HpyCH4III	ACNGT	1 cut(s)	813
HpyCH4IV	ACGT	1 cut(s)	792
HpyCH4V	TGCA	3 cut(s)	523, 790, 1103
HpyF10VI	GCNNNNNNNGC	5 cut(s)	274, 380, 389, 470, 1011
HpyF3I	CTNAG	4 cut(s)	344, 456, 837, 1112
HpySE526I	ACGT	1 cut(s)	792
Hsp92II	CATG	2 cut(s)	477, 751
HspAI	GCGC	1 cut(s)	114
Kpn2I	TCCGGA	1 cut(s)	914
Kzo9I	GATC	2 cut(s)	4, 1037
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	6 cut(s)	86, 199, 235, 282, 314, 1060
Lsp1109I	GCAGC	3 cut(s)	451, 475, 774
LweI	GCATC	3 cut(s)	330, 867, 1125
MaeI	CTAG	2 cut(s)	741, 1129
MaeII	ACGT	1 cut(s)	792
MaeIII	GTNAC	2 cut(s)	349, 625
MalI	GATC	2 cut(s)	6, 1039
MboI	GATC	2 cut(s)	4, 1037
MhlI	GDGCHC	5 cut(s)	279, 319, 390, 597, 714
MluCI	AATT	5 cut(s)	140, 692, 729, 849, 902
MlyI	GAGTC	3 cut(s)	357, 448, 657
MmeI	TCCRAC	2 cut(s)	966, 1015
MroI	TCCGGA	1 cut(s)	914
MseI	TTAA	2 cut(s)	180, 905
MslI	CAYNNNNRTG	1 cut(s)	383
MspI	CCGG	3 cut(s)	312, 915, 1058
MssI	GTTTAAAC	1 cut(s)	181
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	5 cut(s)	274, 380, 389, 470, 1011
NdeII	GATC	2 cut(s)	4, 1037
NlaIII	CATG	2 cut(s)	477, 751
NlaIV	GGNNCC	1 cut(s)	1062
NmuCI	GTSAC	2 cut(s)	349, 625
NspI	RCATGY	1 cut(s)	477
OliI	CACNNNNGTG	1 cut(s)	383
PciSI	GCTCTTC	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	1022
PfeI	GAWTC	6 cut(s)	32, 260, 619, 724, 737, 1022
PflFI	GACNNNGTC	1 cut(s)	666
PkrI	GCNGC	4 cut(s)	394, 466, 490, 789
PleI	GAGTC	3 cut(s)	356, 448, 657
PmeI	GTTTAAAC	1 cut(s)	181
PpsI	GAGTC	3 cut(s)	356, 448, 657
PshAI	GACNNNNGTC	1 cut(s)	509
Psp124BI	GAGCTC	3 cut(s)	279, 319, 714
PspN4I	GGNNCC	1 cut(s)	1062
PspPI	GGNCC	1 cut(s)	1029
PsrI	GAACNNNNNNTAC	4 cut(s)	801, 833, 943, 975
PsyI	GACNNNGTC	1 cut(s)	666
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	383
SacI	GAGCTC	3 cut(s)	279, 319, 714
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	180, 905
SatI	GCNGC	4 cut(s)	393, 465, 489, 788
Sau3AI	GATC	2 cut(s)	4, 1037
Sau96I	GGNCC	1 cut(s)	1029
SchI	GAGTC	3 cut(s)	357, 448, 657
SduI	GDGCHC	5 cut(s)	279, 319, 390, 597, 714
SfaNI	GCATC	3 cut(s)	330, 867, 1125
SfcI	CTRYAG	1 cut(s)	765
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
Sse9I	AATT	5 cut(s)	140, 692, 729, 849, 902
SsiI	CCGC	6 cut(s)	329, 372, 383, 392, 395, 467
SspMI	CTAG	2 cut(s)	741, 1129
SstI	GAGCTC	3 cut(s)	279, 319, 714
TaaI	ACNGT	1 cut(s)	813
TaiI	ACGT	1 cut(s)	795
TaqI	TCGA	7 cut(s)	7, 207, 405, 645, 825, 1016, 1070
TaqII	GACCGA	1 cut(s)	656
TasI	AATT	5 cut(s)	140, 692, 729, 849, 902
TatI	WGTACW	1 cut(s)	75
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	6 cut(s)	32, 260, 619, 724, 737, 1022
Tru1I	TTAA	2 cut(s)	180, 905
Tru9I	TTAA	2 cut(s)	180, 905
TscAI	CASTG	2 cut(s)	123, 781
TseFI	GTSAC	2 cut(s)	349, 625
TseI	GCWGC	3 cut(s)	464, 488, 787
Tsp45I	GTSAC	2 cut(s)	349, 625
TspDTI	ATGAA	3 cut(s)	631, 632, 736
TspRI	CASTG	2 cut(s)	123, 781
Tth111I	GACNNNGTC	1 cut(s)	666
XagI	CCTNNNNNAGG	1 cut(s)	521
XapI	RAATTY	2 cut(s)	692, 849
XceI	RCATGY	1 cut(s)	477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	985
XmiI	GTMKAC	1 cut(s)	817
XspI	CTAG	2 cut(s)	741, 1129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.