AT4G37110

Zinc-finger domain of monoamine-oxidase A repressor R1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001920
Physical Location & Seq
Reverse (-)
17484030 .. 17486400
2371 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G37110.1

Sequence Viewer

Length: 1254 bp
ATGCCTGTGGTGAGAACGAGAGCGAAATGTTCGATTCCCGTCACAAACCCTAATCCAACAGTCGGAGGAGGAAACTCAAACGTCTCGATCTACGAGAAATGCAGAGAAGACAGGATCAAGGAGAATCTTCAGAGGATGAAGAATCTCGGAATCATGGATCTCTCTCTCAAACTCAAATCCGAGATCCGACCCGCCAAAAGGCGTTACGGTAACTCTAATGCCAATCCGGGTCGAGAAACATCTCCTATTCAGCTTTCCGTCTCCTCTAGACGATCCTCAAGATTGAAGCAGGAGCCGCCAGTTTCTCGGAGATCCTCGAGATTGAAGAACGCTACACCAGTTTCCTACGCAGAGGAACCTGAACTGAAGAAGGGTAAAGTGTCTAAAGAAGAGATTGTTTTGTGGGTAGGAGAAGGCGTAAGGCCAGAGATTTACACTGAGGAGCATGAGAAACTGTTAGGTAACACAGAACGAACTTGGGAGCTTTTTGTTGATGGTTGTGACAAAAATGGGAAACGGATTTATGACCCTGTTAGAGGAAAGTGTTGCCACCAGTGCAGGCAGAAGACGCTAGGTTATCATACCCAATGCAGCCAGTGTAACCATTCTGTTCGAGGTCAATTCTGTGGAGATTGTTTATACATGAGATATGGAGAACATGTTCTTGAAGCTCTGGAAAATCCGGACTGGATTTGTCCAGTCTGTCGCGATATCTGCAACTGCAGTTTCTGTCGTACAAAAAAAGGGTGGCTCCCAACTGGTGCAGCTTACAGGAAGATACATAAACTCGGGTATAAGTCTGTTGCACATTATCTGATTCAAACCAACCAACAGTCAGAAACAAGTGAGGATGATGAAACTGATGCTCCTGCAGATAGTCAAGCTTCAGAAGGAGATCATCTCCTTCTCATAACTGATGGGATTCAGGACAATCAAATTGACGAAAATCTCGATGATGATGATGGCTCAAACAAGAATCCGGATTCAGCTAGAAAGTCATTATGCTTCTTGTCGTCTGGGAACAACCAAACTTCAGTGACTGATGGTGATCTCAAGCCATTAGATGTGAAAGAGGTGGATCCAGCAACTCCTGTGATCATCGATCTTGAGGCTCAGTGCAGTGAAACTGAGAGGATGGCTAACTCTGCAAACAAAGAGAACCGAGAAACAAGAAGCAAGCGAAAGATGTCTGCTGAACCAAACCCAAATAGTATTGGTGGAAGACTGAGACAGCGTCGTAAGATTCAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

417

Amino Acids

46.93

Weight (kDa)

8.47

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 175 - 272 7.5e-39 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 708
AccIII TCCGGA 2 cut(s) 682, 979
AciI CCGC 2 cut(s) 192, 296
AclWI GGATC 7 cut(s) 122, 165, 178, 267, 306, 1073, 1086
AcuI CTGAAG 4 cut(s) 113, 386, 870, 1017
AfaI GTAC 1 cut(s) 736
AfiI CCNNNNNNNGG 3 cut(s) 62, 198, 536
AflIII ACRYGT 1 cut(s) 658
AgsI TTSAA 5 cut(s) 286, 325, 668, 821, 1247
AloI GAACNNNNNNTCC 2 cut(s) 645, 677
AluBI AGCT 7 cut(s) 253, 484, 671, 767, 884, 989, 1250
AluI AGCT 7 cut(s) 253, 484, 671, 767, 884, 989, 1250
Alw26I GTCTC 3 cut(s) 88, 265, 1222
AlwI GGATC 7 cut(s) 122, 165, 178, 267, 306, 1073, 1086
AlwNI CAGNNNCTG 2 cut(s) 729, 1040
Ama87I CYCGRG 2 cut(s) 316, 788
Aor13HI TCCGGA 2 cut(s) 682, 979
AoxI GGCC 1 cut(s) 422
ApeKI GCWGC 2 cut(s) 591, 764
Asp700I GAANNNNTTC 1 cut(s) 660
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 22, 1058
AvaI CYCGRG 2 cut(s) 316, 788
BamHI GGATCC 1 cut(s) 1078
BbsI GAAGAC 3 cut(s) 114, 572, 1228
BbvI GCAGC 2 cut(s) 603, 776
BccI CCATC 5 cut(s) 488, 911, 956, 1037, 1129
BclI TGATCA 1 cut(s) 1095
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 3 cut(s) 88, 265, 1222
BfaI CTAG 3 cut(s) 267, 572, 990
BfmI CTRYAG 2 cut(s) 721, 870
BisI GCNGC 3 cut(s) 296, 592, 765
BlsI GCNGC 3 cut(s) 297, 593, 766
Bme1390I CCNGG 1 cut(s) 228
BmeT110I CYCGRG 2 cut(s) 316, 788
BmiI GGNNCC 4 cut(s) 294, 357, 752, 1080
BmrFI CCNGG 1 cut(s) 228
BmsI GCATC 1 cut(s) 853
BpiI GAAGAC 3 cut(s) 114, 572, 1228
BplI GAGNNNNNCTC 2 cut(s) 885, 917
BpuEI CTTGAG 3 cut(s) 262, 1037, 1127
BpuMI CCSGG 1 cut(s) 228
Bsa29I ATCGAT 1 cut(s) 1101
BsaBI GATNNNNATC 1 cut(s) 1047
BsaWI WCCGGW 2 cut(s) 682, 979
BsaXI ACNNNNNCTCC 6 cut(s) 402, 432, 645, 675, 850, 880
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 198, 536
Bse1I ACTGG 7 cut(s) 299, 338, 553, 595, 692, 698, 763
Bse8I GATNNNNATC 1 cut(s) 1047
BseAI TCCGGA 2 cut(s) 682, 979
BseCI ATCGAT 1 cut(s) 1101
BseGI GGATG 3 cut(s) 141, 856, 1140
BseJI GATNNNNATC 1 cut(s) 1047
BseLI CCNNNNNNNGG 3 cut(s) 62, 198, 536
BseMII CTCAG 4 cut(s) 429, 1119, 1127, 1217
BseNI ACTGG 7 cut(s) 299, 338, 553, 595, 692, 698, 763
BseRI GAGGAG 3 cut(s) 81, 253, 455
BseXI GCAGC 2 cut(s) 603, 776
BsgI GTGCAG 3 cut(s) 577, 783, 1138
Bsh1236I CGCG 1 cut(s) 708
BshFI GGCC 1 cut(s) 424
BshVI ATCGAT 1 cut(s) 1101
BsiHKCI CYCGRG 2 cut(s) 316, 788
BsiSI CCGG 3 cut(s) 227, 683, 980
BslI CCNNNNNNNGG 3 cut(s) 62, 198, 536
BsmAI GTCTC 3 cut(s) 88, 265, 1222
BsmBI CGTCTC 2 cut(s) 88, 265
BsnI GGCC 1 cut(s) 424
BsoBI CYCGRG 2 cut(s) 316, 788
Bsp13I TCCGGA 2 cut(s) 682, 979
Bsp68I TCGCGA 1 cut(s) 708
BspACI CCGC 2 cut(s) 192, 296
BspANI GGCC 1 cut(s) 424
BspCNI CTCAG 4 cut(s) 430, 1120, 1126, 1218
BspDI ATCGAT 1 cut(s) 1101
BspEI TCCGGA 2 cut(s) 682, 979
BspFNI CGCG 1 cut(s) 708
BspLI GGNNCC 4 cut(s) 294, 357, 752, 1080
BspMAI CTGCAG 2 cut(s) 725, 874
BspPI GGATC 7 cut(s) 122, 165, 178, 267, 306, 1073, 1086
BsrI ACTGG 7 cut(s) 299, 338, 553, 595, 692, 698, 763
Bst4CI ACNGT 4 cut(s) 61, 209, 456, 834
Bst6I CTCTTC 1 cut(s) 384
BstC8I GCNNGC 2 cut(s) 560, 1178
BstDEI CTNAG 4 cut(s) 438, 1113, 1128, 1226
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 3 cut(s) 141, 856, 1140
BstFNI CGCG 1 cut(s) 708
BstMAI GTCTC 3 cut(s) 88, 265, 1222
BstMWI GCNNNNNNNGC 5 cut(s) 295, 555, 568, 714, 1145
BstNSI RCATGY 1 cut(s) 662
BstSCI CCNGG 1 cut(s) 226
BstSFI CTRYAG 2 cut(s) 721, 870
BstUI CGCG 1 cut(s) 708
BstV1I GCAGC 2 cut(s) 603, 776
BstV2I GAAGAC 3 cut(s) 114, 572, 1228
BstX2I RGATCY 4 cut(s) 157, 183, 311, 1078
BstYI RGATCY 4 cut(s) 157, 183, 311, 1078
Bsu15I ATCGAT 1 cut(s) 1101
BsuRI GGCC 1 cut(s) 424
BsuTUI ATCGAT 1 cut(s) 1101
BtsCI GGATG 3 cut(s) 141, 856, 1140
BtsI GCAGTG 1 cut(s) 1126
BtsIMutI CAGTG 6 cut(s) 435, 560, 602, 1041, 1121, 1126
BtuMI TCGCGA 1 cut(s) 708
Cac8I GCNNGC 2 cut(s) 560, 1178
CaiI CAGNNNCTG 2 cut(s) 729, 1040
ClaI ATCGAT 1 cut(s) 1101
CseI GACGC 2 cut(s) 577, 1223
Csp6I GTAC 1 cut(s) 735
CviAII CATG 4 cut(s) 154, 446, 643, 659
CviQI GTAC 1 cut(s) 735
DdeI CTNAG 4 cut(s) 438, 1113, 1128, 1226
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Eco32I GATATC 1 cut(s) 712
Eco57I CTGAAG 4 cut(s) 113, 386, 870, 1017
Eco88I CYCGRG 2 cut(s) 316, 788
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoRV GATATC 1 cut(s) 712
Esp3I CGTCTC 2 cut(s) 88, 265
FaeI CATG 4 cut(s) 157, 449, 646, 662
FatI CATG 4 cut(s) 153, 445, 642, 658
FauI CCCGC 1 cut(s) 199
FbaI TGATCA 1 cut(s) 1095
Fnu4HI GCNGC 3 cut(s) 296, 592, 765
FokI GGATG 3 cut(s) 148, 863, 1147
Fsp4HI GCNGC 3 cut(s) 296, 592, 765
FspBI CTAG 3 cut(s) 267, 572, 990
GluI GCNGC 3 cut(s) 296, 592, 765
HaeIII GGCC 1 cut(s) 424
HapII CCGG 3 cut(s) 227, 683, 980
HgaI GACGC 2 cut(s) 577, 1223
Hin1II CATG 4 cut(s) 157, 449, 646, 662
HindIII AAGCTT 2 cut(s) 882, 1248
HinfI GANTC 9 cut(s) 34, 124, 142, 150, 817, 922, 976, 983, 1243
HpaII CCGG 3 cut(s) 227, 683, 980
HphI GGTGA 2 cut(s) 22, 1058
Hpy188I TCNGA 9 cut(s) 65, 132, 149, 181, 188, 309, 816, 838, 889
Hpy99I CGWCG 1 cut(s) 1239
HpyAV CCTTC 4 cut(s) 364, 407, 884, 914
HpyCH4III ACNGT 4 cut(s) 61, 209, 456, 834
HpyCH4IV ACGT 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 5 cut(s) 295, 555, 568, 714, 1145
HpyF3I CTNAG 4 cut(s) 438, 1113, 1128, 1226
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 4 cut(s) 157, 449, 646, 662
Kpn2I TCCGGA 2 cut(s) 682, 979
Ksp22I TGATCA 1 cut(s) 1095
LmnI GCTCC 5 cut(s) 292, 442, 481, 756, 871
Lsp1109I GCAGC 2 cut(s) 603, 776
LweI GCATC 1 cut(s) 853
MaeI CTAG 3 cut(s) 267, 572, 990
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 7 cut(s) 40, 203, 209, 461, 500, 599, 1036
MboII GAAGA 9 cut(s) 119, 119, 151, 337, 379, 401, 577, 787, 1233
MflI RGATCY 4 cut(s) 157, 183, 311, 1078
MluCI AATT 2 cut(s) 620, 936
MmeI TCCRAC 3 cut(s) 43, 80, 211
MroI TCCGGA 2 cut(s) 682, 979
MroXI GAANNNNTTC 1 cut(s) 660
MspI CCGG 3 cut(s) 227, 683, 980
MspR9I CCNGG 1 cut(s) 228
MvnI CGCG 1 cut(s) 708
MwoI GCNNNNNNNGC 5 cut(s) 295, 555, 568, 714, 1145
NciI CCSGG 1 cut(s) 228
NlaIII CATG 4 cut(s) 157, 449, 646, 662
NlaIV GGNNCC 4 cut(s) 294, 357, 752, 1080
NmuCI GTSAC 3 cut(s) 40, 500, 1036
NruI TCGCGA 1 cut(s) 708
NspI RCATGY 1 cut(s) 662
PaeR7I CTCGAG 1 cut(s) 316
PciI ACATGT 1 cut(s) 658
PcsI WCGNNNNNNNCGW 1 cut(s) 948
PdmI GAANNNNTTC 1 cut(s) 660
PfeI GAWTC 9 cut(s) 34, 124, 142, 150, 817, 922, 976, 983, 1243
PflFI GACNNNGTC 1 cut(s) 1233
PkrI GCNGC 3 cut(s) 297, 593, 766
PscI ACATGT 1 cut(s) 658
PspN4I GGNNCC 4 cut(s) 294, 357, 752, 1080
PstI CTGCAG 2 cut(s) 725, 874
PstNI CAGNNNCTG 2 cut(s) 729, 1040
PsuI RGATCY 4 cut(s) 157, 183, 311, 1078
PsyI GACNNNGTC 1 cut(s) 1233
RruI TCGCGA 1 cut(s) 708
RsaI GTAC 1 cut(s) 736
RsaNI GTAC 1 cut(s) 735
SatI GCNGC 3 cut(s) 296, 592, 765
ScrFI CCNGG 1 cut(s) 228
SfaNI GCATC 1 cut(s) 853
SfcI CTRYAG 2 cut(s) 721, 870
Sfr274I CTCGAG 1 cut(s) 316
SlaI CTCGAG 1 cut(s) 316
SmlI CTYRAG 4 cut(s) 277, 316, 1052, 1106
SmoI CTYRAG 4 cut(s) 277, 316, 1052, 1106
Sse9I AATT 2 cut(s) 620, 936
SsiI CCGC 2 cut(s) 192, 296
SspMI CTAG 3 cut(s) 267, 572, 990
StyD4I CCNGG 1 cut(s) 226
TaaI ACNGT 4 cut(s) 61, 209, 456, 834
TaiI ACGT 1 cut(s) 84
TaqI TCGA 7 cut(s) 32, 86, 232, 317, 613, 951, 1101
TasI AATT 2 cut(s) 620, 936
TauI GCSGC 1 cut(s) 298
TfiI GAWTC 9 cut(s) 34, 124, 142, 150, 817, 922, 976, 983, 1243
TscAI CASTG 6 cut(s) 442, 560, 602, 1041, 1121, 1126
TseFI GTSAC 3 cut(s) 40, 500, 1036
TseI GCWGC 2 cut(s) 591, 764
Tsp45I GTSAC 3 cut(s) 40, 500, 1036
TspDTI ATGAA 2 cut(s) 152, 870
TspGWI ACGGA 2 cut(s) 247, 532
TspRI CASTG 6 cut(s) 442, 560, 602, 1041, 1121, 1126
Tth111I GACNNNGTC 1 cut(s) 1233
XagI CCTNNNNNAGG 1 cut(s) 534
XbaI TCTAGA 1 cut(s) 266
XceI RCATGY 1 cut(s) 662
XhoI CTCGAG 1 cut(s) 316
XmnI GAANNNNTTC 1 cut(s) 660
XspI CTAG 3 cut(s) 267, 572, 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.