RchiOBHm_Chr2g0103711

Cell division cycle-associated protein 7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001920
Physical Location & Seq
Reverse (-)
15109276 .. 15113366
4091 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47806

Sequence Viewer

Length: 1467 bp
ATGATGATGAACAAGACTCAGACCCAGAACAAGTCTCAGTATGAGCTTTCCAGAGATGAAAGAATCAAAGCAAACCTTGAACGAATGCAGAAGCTCGGCCTTGCTGACATCTCGCTTGAGCTCAAGTCTCAGTTTCAGGCCAAGCGCGCCACAAAGAGCTTCTCAAACCGTACGACGCCGTCTTCTGTAGCCTCTCCTATTCGGAGGCCCGGACCCATTCGCCGATCTTCTAGATTGCAGAATTCAACTCCAGTAAGCTACACAGAGGCGCCTCTGGGGAAGAAGGATGAGGGTAAGGAAATGGGTAGTATTATGCTGGAGGAGGGTGCAAGACCGGAGATTTACACAGAAGAGCATGAAAAGCTGTTGGGTCACACTGAAAAGAGCTGGACTCTTTTTGGGGATGGTTATGGGAAAGATGGAAAGCGACTTTATGACCCAGTTAGAGGAAAGACTTGTCATCAGTGCAGACAGAAAACTCTGGGATATCGTACTCAATGCCGCCAATGCAACAGGCTCCATGGACAGTTCTGTGGAGACTGTTTGTACATGAGATATGGGGAGCATGTACTTGAAGCTATTGAGAATCCAAAGTGGATTTGCCCTGTCTGTCGTGGAATTTGCAACTGTAGTTTTTGTCGGACAGCAAAAGGATGGCCTCCAACTGGCCTTCTCTACAGGAAGATAGTACAACTAGGATTCAAATCAGTTGCACACTATCTCATTCAAACCCGACGTGCAGAGACAAGTTTAGTGCAAAATCCAGAAACTCCCGAGCAAGTTTCTGGAAGAAGGTTACTGCCCTTCCCAGATACGGATGAAGAAAATCTCAAGGCTGATCATAATGACCTTGGACCGTTAACATCTCTAGGTGAACAGAAAGGAGACAATGAGTTTAAGTGTGAAAAAGAGGATGAAAAGCAGAATAATGCAGATCTAGACATCAATAACCAAGCTTCTGCAAAGAGGACATTGTCCTTTCCAGATATTGACCACATGGTTGGTGACCACCTTGGATTGCCAAAGCTTCAATCTGAGAGCAGCACTGGTGATCATAAAGAAGAGGAAGAGAGTAAAGTGGATTGTGTGGATTTGAAACTTGGTGATAGTACTAATGGATTAGAAACTGCCTCAAAGCCCAAAAAGAAGTGGGCTCGGGATAATGAACCAAGTGCTGATAGTATTGGTGGAAGATTAAGGCGGAGATGTCAGAAAGAAGCTGAGCATGATGATGATTCTTCAGATGCAAAAGACAAAATCCCAGATGGTAAGCAGGATGCTAACAAAATCTTGTCGGAGACGGAAGTCAAAAAAGAAATCTGTGTGCTGTTTACTGATAGTAAAGATGGTGGCGATAGCAGTACCGTATTGAAAGGAAGTTCAAAGCTCAAGAAGCGCATTCGTGTGGCTGAACCAAGTGCAGACAGTGTTGCTGGAAGACTGAGGCAGAGGCGTAAGGGCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

488

Amino Acids

54.93

Weight (kDa)

8.72

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 145 - 241 7e-40 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 268
AccII CGCG 1 cut(s) 147
AciI CCGC 2 cut(s) 502, 1201
AcsI RAATTY 2 cut(s) 241, 618
AcuI CTGAAG 1 cut(s) 1224
AcyI GRCGYC 2 cut(s) 176, 269
AfaI GTAC 7 cut(s) 172, 493, 548, 570, 690, 1111, 1363
AfiI CCNNNNNNNGG 3 cut(s) 446, 665, 814
AgsI TTSAA 9 cut(s) 80, 246, 575, 703, 728, 1031, 1096, 1372, 1383
AjiI CACGTC 1 cut(s) 737
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 6 cut(s) 39, 132, 531, 737, 879, 1292
Ama87I CYCGRG 2 cut(s) 773, 1155
AoxI GGCC 5 cut(s) 97, 138, 206, 656, 667
ApeKI GCWGC 1 cut(s) 1041
ApoI RAATTY 2 cut(s) 241, 618
AspLEI GCGC 4 cut(s) 147, 149, 271, 1398
AspS9I GGNCC 3 cut(s) 207, 212, 854
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 4 cut(s) 884, 1016, 1061, 1115
AvaI CYCGRG 2 cut(s) 773, 1155
AvaII GGWCC 2 cut(s) 212, 854
BanI GGYRCC 1 cut(s) 268
BanII GRGCYC 2 cut(s) 123, 1156
BbsI GAAGAC 2 cut(s) 174, 1444
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 1053
BccI CCATC 5 cut(s) 398, 413, 648, 1259, 1340
BceAI ACGGC 1 cut(s) 163
BclI TGATCA 2 cut(s) 838, 1051
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 6 cut(s) 39, 132, 531, 737, 879, 1292
BfaI CTAG 4 cut(s) 231, 695, 869, 938
BfmI CTRYAG 3 cut(s) 186, 628, 676
BfoI RGCGCY 1 cut(s) 272
BglII AGATCT 1 cut(s) 934
BisI GCNGC 2 cut(s) 502, 1042
BlpI GCTNAGC 1 cut(s) 1221
BlsI GCNGC 2 cut(s) 503, 1043
BmcAI AGTACT 1 cut(s) 1111
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 2 cut(s) 212, 854
BmeT110I CYCGRG 2 cut(s) 773, 1155
BmgBI CACGTC 1 cut(s) 737
BmgT120I GGNCC 3 cut(s) 207, 212, 854
BmiI GGNNCC 3 cut(s) 214, 270, 518
BmrFI CCNGG 1 cut(s) 210
BmrI ACTGGG 1 cut(s) 434
BmsI GCATC 2 cut(s) 1234, 1267
BmuI ACTGGG 1 cut(s) 434
BoxI GACNNNNGTC 1 cut(s) 1304
BpiI GAAGAC 2 cut(s) 174, 1444
BplI GAGNNNNNCTC 2 cut(s) 376, 408
BpmI CTGGAG 2 cut(s) 234, 338
Bpu1102I GCTNAGC 1 cut(s) 1221
BpuEI CTTGAG 4 cut(s) 107, 137, 815, 1373
BpuMI CCSGG 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 703
BsaHI GRCGYC 2 cut(s) 176, 269
BsaJI CCNNGG 3 cut(s) 520, 850, 1012
BsaWI WCCGGW 1 cut(s) 334
Bsc4I CCNNNNNNNGG 3 cut(s) 446, 665, 814
Bse1I ACTGG 4 cut(s) 251, 440, 670, 1051
Bse8I GATNNNNATC 1 cut(s) 703
BseDI CCNNGG 3 cut(s) 520, 850, 1012
BseGI GGATG 6 cut(s) 292, 409, 659, 823, 919, 1282
BseJI GATNNNNATC 1 cut(s) 703
BseLI CCNNNNNNNGG 3 cut(s) 446, 665, 814
BseMII CTCAG 6 cut(s) 32, 50, 143, 1026, 1212, 1433
BseNI ACTGG 4 cut(s) 251, 440, 670, 1051
BsePI GCGCGC 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 1 cut(s) 1053
BsgI GTGCAG 3 cut(s) 487, 759, 1440
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 5 cut(s) 99, 140, 208, 658, 669
BshNI GGYRCC 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 123
BsiHKCI CYCGRG 2 cut(s) 773, 1155
BsiSI CCGG 2 cut(s) 210, 335
BsiWI CGTACG 1 cut(s) 170
BslI CCNNNNNNNGG 3 cut(s) 446, 665, 814
BsmAI GTCTC 6 cut(s) 39, 132, 531, 737, 879, 1292
BsmBI CGTCTC 1 cut(s) 1292
BsmI GAATGC 2 cut(s) 90, 1398
BsnI GGCC 5 cut(s) 99, 140, 208, 658, 669
BsoBI CYCGRG 2 cut(s) 773, 1155
Bsp1286I GDGCHC 2 cut(s) 123, 1156
Bsp1407I TGTACA 1 cut(s) 546
Bsp143I GATC 4 cut(s) 224, 838, 934, 1051
Bsp1720I GCTNAGC 1 cut(s) 1221
Bsp19I CCATGG 1 cut(s) 520
BspACI CCGC 2 cut(s) 502, 1201
BspANI GGCC 5 cut(s) 99, 140, 208, 658, 669
BspCNI CTCAG 6 cut(s) 31, 49, 142, 1027, 1213, 1434
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 3 cut(s) 214, 270, 518
BspQI GCTCTTC 1 cut(s) 345
BspT107I GGYRCC 1 cut(s) 268
BsrGI TGTACA 1 cut(s) 546
BsrI ACTGG 4 cut(s) 251, 440, 670, 1051
BssECI CCNNGG 3 cut(s) 520, 850, 1012
BssHII GCGCGC 1 cut(s) 145
BssMI GATC 4 cut(s) 224, 838, 934, 1051
BssNI GRCGYC 2 cut(s) 176, 269
BssT1I CCWWGG 3 cut(s) 520, 850, 1012
Bst4CI ACNGT 7 cut(s) 170, 528, 542, 629, 858, 1366, 1427
Bst6I CTCTTC 3 cut(s) 345, 1056, 1062
BstACI GRCGYC 2 cut(s) 176, 269
BstAUI TGTACA 1 cut(s) 546
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 6 cut(s) 18, 36, 129, 1035, 1221, 1442
BstDSI CCRYGG 1 cut(s) 520
BstEII GGTNACC 1 cut(s) 1004
BstF5I GGATG 6 cut(s) 292, 409, 659, 823, 919, 1282
BstFNI CGCG 1 cut(s) 147
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 4 cut(s) 147, 149, 271, 1398
BstKTI GATC 4 cut(s) 227, 841, 937, 1054
BstMAI GTCTC 6 cut(s) 39, 132, 531, 737, 879, 1292
BstMBI GATC 4 cut(s) 224, 838, 934, 1051
BstMWI GCNNNNNNNGC 4 cut(s) 146, 361, 507, 1393
BstNSI RCATGY 1 cut(s) 569
BstPAI GACNNNNGTC 1 cut(s) 1304
BstPI GGTNACC 1 cut(s) 1004
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 3 cut(s) 186, 628, 676
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 1053
BstV2I GAAGAC 2 cut(s) 174, 1444
BstX2I RGATCY 1 cut(s) 934
BstXI CCANNNNNNTGG 1 cut(s) 1001
BstYI RGATCY 1 cut(s) 934
BsuRI GGCC 5 cut(s) 99, 140, 208, 658, 669
BtgI CCRYGG 1 cut(s) 520
BtrI CACGTC 1 cut(s) 737
BtsCI GGATG 6 cut(s) 292, 409, 659, 823, 919, 1282
BtsIMutI CAGTG 4 cut(s) 375, 470, 1044, 1432
Cac8I GCNNGC 1 cut(s) 147
CfoI GCGC 4 cut(s) 147, 149, 271, 1398
Cfr13I GGNCC 3 cut(s) 207, 212, 854
CseI GACGC 1 cut(s) 184
Csp6I GTAC 7 cut(s) 171, 492, 547, 569, 689, 1110, 1362
CviAII CATG 6 cut(s) 356, 521, 550, 566, 997, 1226
CviQI GTAC 7 cut(s) 171, 492, 547, 569, 689, 1110, 1362
DdeI CTNAG 6 cut(s) 18, 36, 129, 1035, 1221, 1442
DinI GGCGCC 1 cut(s) 270
DpnI GATC 4 cut(s) 226, 840, 936, 1053
DpnII GATC 4 cut(s) 224, 838, 934, 1051
Eam1104I CTCTTC 3 cut(s) 345, 1056, 1062
EarI CTCTTC 3 cut(s) 345, 1056, 1062
EciI GGCGGA 1 cut(s) 1216
Ecl136II GAGCTC 1 cut(s) 121
Eco130I CCWWGG 3 cut(s) 520, 850, 1012
Eco24I GRGCYC 2 cut(s) 123, 1156
Eco32I GATATC 1 cut(s) 488
Eco47I GGWCC 2 cut(s) 212, 854
Eco53kI GAGCTC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 1224
Eco88I CYCGRG 2 cut(s) 773, 1155
Eco91I GGTNACC 1 cut(s) 1004
EcoICRI GAGCTC 1 cut(s) 121
EcoO65I GGTNACC 1 cut(s) 1004
EcoRI GAATTC 1 cut(s) 241
EcoRV GATATC 1 cut(s) 488
EcoT14I CCWWGG 3 cut(s) 520, 850, 1012
EcoT38I GRGCYC 2 cut(s) 123, 1156
EgeI GGCGCC 1 cut(s) 270
EheI GGCGCC 1 cut(s) 270
ErhI CCWWGG 3 cut(s) 520, 850, 1012
Esp3I CGTCTC 1 cut(s) 1292
FaeI CATG 6 cut(s) 359, 524, 553, 569, 1000, 1229
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FatI CATG 6 cut(s) 355, 520, 549, 565, 996, 1225
FbaI TGATCA 2 cut(s) 838, 1051
Fnu4HI GCNGC 2 cut(s) 502, 1042
FokI GGATG 6 cut(s) 299, 416, 666, 830, 926, 1289
FriOI GRGCYC 2 cut(s) 123, 1156
Fsp4HI GCNGC 2 cut(s) 502, 1042
FspBI CTAG 4 cut(s) 231, 695, 869, 938
GlaI GCGC 4 cut(s) 146, 148, 270, 1397
GluI GCNGC 2 cut(s) 502, 1042
GsuI CTGGAG 2 cut(s) 234, 338
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 5 cut(s) 99, 140, 208, 658, 669
HapII CCGG 2 cut(s) 210, 335
HgaI GACGC 1 cut(s) 184
HhaI GCGC 4 cut(s) 147, 149, 271, 1398
Hin1I GRCGYC 2 cut(s) 176, 269
Hin1II CATG 6 cut(s) 359, 524, 553, 569, 1000, 1229
Hin6I GCGC 4 cut(s) 145, 147, 269, 1396
HinP1I GCGC 4 cut(s) 145, 147, 269, 1396
HincII GTYRAC 1 cut(s) 861
HindII GTYRAC 1 cut(s) 861
HindIII AAGCTT 2 cut(s) 954, 1025
HinfI GANTC 6 cut(s) 16, 63, 391, 586, 699, 1235
HpaI GTTAAC 1 cut(s) 861
HpaII CCGG 2 cut(s) 210, 335
HphI GGTGA 4 cut(s) 884, 1016, 1061, 1115
Hpy166II GTNNAC 3 cut(s) 861, 875, 1332
Hpy188I TCNGA 7 cut(s) 21, 204, 642, 1036, 1212, 1243, 1297
Hpy188III TCNNGA 9 cut(s) 51, 231, 764, 773, 786, 938, 983, 1157, 1390
Hpy8I GTNNAC 3 cut(s) 861, 875, 1332
Hpy99I CGWCG 2 cut(s) 178, 738
HpyAV CCTTC 4 cut(s) 277, 680, 786, 814
HpyCH4III ACNGT 7 cut(s) 170, 528, 542, 629, 858, 1366, 1427
HpyCH4IV ACGT 1 cut(s) 736
HpyF10VI GCNNNNNNNGC 4 cut(s) 146, 361, 507, 1393
HpyF3I CTNAG 6 cut(s) 18, 36, 129, 1035, 1221, 1442
HpySE526I ACGT 1 cut(s) 736
Hsp92I GRCGYC 2 cut(s) 176, 269
Hsp92II CATG 6 cut(s) 359, 524, 553, 569, 1000, 1229
HspAI GCGC 4 cut(s) 145, 147, 269, 1396
KasI GGCGCC 1 cut(s) 268
Ksp22I TGATCA 2 cut(s) 838, 1051
KspAI GTTAAC 1 cut(s) 861
Kzo9I GATC 4 cut(s) 224, 838, 934, 1051
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 2 cut(s) 522, 562
Lsp1109I GCAGC 1 cut(s) 1053
LweI GCATC 2 cut(s) 1234, 1267
MaeI CTAG 4 cut(s) 231, 695, 869, 938
MaeII ACGT 1 cut(s) 736
MaeIII GTNAC 3 cut(s) 371, 795, 1004
MalI GATC 4 cut(s) 226, 840, 936, 1053
MboI GATC 4 cut(s) 224, 838, 934, 1051
MflI RGATCY 1 cut(s) 934
MhlI GDGCHC 2 cut(s) 123, 1156
MluCI AATT 3 cut(s) 241, 618, 1462
Mly113I GGCGCC 1 cut(s) 269
MlyI GAGTC 2 cut(s) 10, 385
MmeI TCCRAC 3 cut(s) 620, 686, 1275
MseI TTAA 3 cut(s) 860, 897, 1196
MslI CAYNNNNRTG 2 cut(s) 1230, 1403
MspI CCGG 2 cut(s) 210, 335
MspR9I CCNGG 1 cut(s) 210
Mva1269I GAATGC 2 cut(s) 90, 1398
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 4 cut(s) 146, 361, 507, 1393
NarI GGCGCC 1 cut(s) 269
NciI CCSGG 1 cut(s) 210
NcoI CCATGG 1 cut(s) 520
NdeII GATC 4 cut(s) 224, 838, 934, 1051
NlaIII CATG 6 cut(s) 359, 524, 553, 569, 1000, 1229
NlaIV GGNNCC 3 cut(s) 214, 270, 518
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 2 cut(s) 371, 1004
NspI RCATGY 1 cut(s) 569
PauI GCGCGC 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 345
PctI GAATGC 2 cut(s) 90, 1398
PfeI GAWTC 4 cut(s) 63, 586, 699, 1235
Pfl23II CGTACG 1 cut(s) 170
PflFI GACNNNGTC 2 cut(s) 178, 973
PkrI GCNGC 2 cut(s) 503, 1043
PleI GAGTC 2 cut(s) 10, 385
PluTI GGCGCC 1 cut(s) 272
PpsI GAGTC 2 cut(s) 10, 385
PshAI GACNNNNGTC 1 cut(s) 1304
Psp124BI GAGCTC 1 cut(s) 123
PspEI GGTNACC 1 cut(s) 1004
PspLI CGTACG 1 cut(s) 170
PspN4I GGNNCC 3 cut(s) 214, 270, 518
PspPI GGNCC 3 cut(s) 207, 212, 854
PsuI RGATCY 1 cut(s) 934
PsyI GACNNNGTC 2 cut(s) 178, 973
PteI GCGCGC 1 cut(s) 145
RsaI GTAC 7 cut(s) 172, 493, 548, 570, 690, 1111, 1363
RsaNI GTAC 7 cut(s) 171, 492, 547, 569, 689, 1110, 1362
RseI CAYNNNNRTG 2 cut(s) 1230, 1403
SacI GAGCTC 1 cut(s) 123
SapI GCTCTTC 1 cut(s) 345
SaqAI TTAA 3 cut(s) 860, 897, 1196
SatI GCNGC 2 cut(s) 502, 1042
Sau3AI GATC 4 cut(s) 224, 838, 934, 1051
Sau96I GGNCC 3 cut(s) 207, 212, 854
ScaI AGTACT 1 cut(s) 1111
SchI GAGTC 2 cut(s) 10, 385
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 2 cut(s) 123, 1156
SfaNI GCATC 2 cut(s) 1234, 1267
SfcI CTRYAG 3 cut(s) 186, 628, 676
SfoI GGCGCC 1 cut(s) 270
SinI GGWCC 2 cut(s) 212, 854
SmiMI CAYNNNNRTG 2 cut(s) 1230, 1403
SmlI CTYRAG 4 cut(s) 116, 122, 830, 1388
SmoI CTYRAG 4 cut(s) 116, 122, 830, 1388
Sse9I AATT 3 cut(s) 241, 618, 1462
SsiI CCGC 2 cut(s) 502, 1201
SspDI GGCGCC 1 cut(s) 268
SspMI CTAG 4 cut(s) 231, 695, 869, 938
SstI GAGCTC 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 208
StyI CCWWGG 3 cut(s) 520, 850, 1012
TaaI ACNGT 7 cut(s) 170, 528, 542, 629, 858, 1366, 1427
TaiI ACGT 1 cut(s) 739
TasI AATT 3 cut(s) 241, 618, 1462
TatI WGTACW 4 cut(s) 546, 568, 688, 1109
TauI GCSGC 1 cut(s) 504
TfiI GAWTC 4 cut(s) 63, 586, 699, 1235
Tru1I TTAA 3 cut(s) 860, 897, 1196
Tru9I TTAA 3 cut(s) 860, 897, 1196
TscAI CASTG 4 cut(s) 382, 470, 1051, 1432
TseFI GTSAC 2 cut(s) 371, 1004
TseI GCWGC 1 cut(s) 1041
Tsp45I GTSAC 2 cut(s) 371, 1004
TspDTI ATGAA 6 cut(s) 23, 72, 372, 834, 930, 1179
TspGWI ACGGA 2 cut(s) 830, 1316
TspRI CASTG 4 cut(s) 382, 470, 1051, 1432
Tth111I GACNNNGTC 2 cut(s) 178, 973
VpaK11BI GGWCC 2 cut(s) 212, 854
XapI RAATTY 2 cut(s) 241, 618
XbaI TCTAGA 2 cut(s) 230, 937
XceI RCATGY 1 cut(s) 569
XspI CTAG 4 cut(s) 231, 695, 869, 938
ZrmI AGTACT 1 cut(s) 1111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.