Rorug05G0590100

Cell division cycle-associated 7-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001920
Physical Location & Seq
Forward (+)
78826849 .. 78827486
638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0590100.1

Sequence Viewer

Length: 405 bp
ATGAGGAGAGATGTGCTCAGCAAATGGAGCTTGCCACCAAGTAAGGAGTTGCGGGGGGCAAAAGACTTCATCAAGAAATACTTGGAGACAGAGGGTCAGAATATAGGAACTATTCATGCTGCAGACTTTCTGGGATCCATTCATTCACTTCCAATTGTCATGATCGAGACAGAAAGAGGAAGACTTGAGAAATACAAAGCTAAGGCGTGCTTATGCAGATTGCAGATCAAAGTTTTGAGTCCTGAAATTTTTTCAGATGGCAAGAAAAATTGCATCAAATTAAGTAAATCATGTAAGGTCATAGTGAAGGGCGAGAGGTTTGGACTGGAAACAAAGAAAAACGACGAATCTTGGTATTATTGCTGGTGTGGCTGCTCTGGTTTTTGGATCCAAGAAGTTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

134

Amino Acids

15.38

Weight (kDa)

9.18

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 52
AclWI GGATC 4 cut(s) 129, 142, 382, 395
AcsI RAATTY 1 cut(s) 246
AhdI GACNNNNNGTC 1 cut(s) 93
AluBI AGCT 2 cut(s) 30, 200
AluI AGCT 2 cut(s) 30, 200
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 2 cut(s) 80, 161
AlwI GGATC 4 cut(s) 129, 142, 382, 395
ApeKI GCWGC 2 cut(s) 119, 372
ApoI RAATTY 1 cut(s) 246
BamHI GGATCC 2 cut(s) 134, 387
BbsI GAAGAC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 2 cut(s) 106, 359
BccI CCATC 1 cut(s) 251
BcoDI GTCTC 2 cut(s) 80, 161
BfmI CTRYAG 1 cut(s) 120
BisI GCNGC 2 cut(s) 120, 373
BlpI GCTNAGC 1 cut(s) 17
BlsI GCNGC 2 cut(s) 121, 374
BmeRI GACNNNNNGTC 1 cut(s) 93
BmiI GGNNCC 2 cut(s) 136, 389
BmsI GCATC 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 187
BplI GAGNNNNNCTC 1 cut(s) 32
Bpu10I CCTNAGC 1 cut(s) 201
Bpu1102I GCTNAGC 1 cut(s) 17
BpuEI CTTGAG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 330
BseMII CTCAG 1 cut(s) 31
BseNI ACTGG 1 cut(s) 330
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 2 cut(s) 106, 359
BsiHKAI GWGCWC 1 cut(s) 18
BsmAI GTCTC 2 cut(s) 80, 161
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 4 cut(s) 134, 162, 225, 387
Bsp1720I GCTNAGC 1 cut(s) 17
BspACI CCGC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 30
BspHI TCATGA 1 cut(s) 159
BspLI GGNNCC 2 cut(s) 136, 389
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 4 cut(s) 129, 142, 382, 395
BsrI ACTGG 1 cut(s) 330
BssMI GATC 4 cut(s) 134, 162, 225, 387
BstC8I GCNNGC 2 cut(s) 32, 208
BstDEI CTNAG 2 cut(s) 17, 201
BstKTI GATC 4 cut(s) 137, 165, 228, 390
BstMAI GTCTC 2 cut(s) 80, 161
BstMBI GATC 4 cut(s) 134, 162, 225, 387
BstMWI GCNNNNNNNGC 2 cut(s) 27, 369
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 106, 359
BstV2I GAAGAC 1 cut(s) 187
BstX2I RGATCY 2 cut(s) 134, 387
BstYI RGATCY 2 cut(s) 134, 387
Cac8I GCNNGC 2 cut(s) 32, 208
CciI TCATGA 1 cut(s) 159
CviAII CATG 3 cut(s) 116, 160, 291
CviJI RGCY 3 cut(s) 30, 200, 372
CviKI_1 RGCY 3 cut(s) 30, 200, 372
DdeI CTNAG 2 cut(s) 17, 201
DpnI GATC 4 cut(s) 136, 164, 227, 389
DpnII GATC 4 cut(s) 134, 162, 225, 387
DriI GACNNNNNGTC 1 cut(s) 93
Eam1105I GACNNNNNGTC 1 cut(s) 93
FaeI CATG 3 cut(s) 119, 163, 294
FaiI YATR 6 cut(s) 104, 117, 161, 214, 292, 302
FalI AAGNNNNNCTT 4 cut(s) 65, 97, 194, 226
FatI CATG 3 cut(s) 115, 159, 290
FauI CCCGC 1 cut(s) 45
Fnu4HI GCNGC 2 cut(s) 120, 373
Fsp4HI GCNGC 2 cut(s) 120, 373
GluI GCNGC 2 cut(s) 120, 373
Hin1II CATG 3 cut(s) 119, 163, 294
HinfI GANTC 2 cut(s) 238, 347
Hpy188I TCNGA 2 cut(s) 99, 256
Hpy188III TCNNGA 4 cut(s) 73, 160, 166, 242
Hpy99I CGWCG 1 cut(s) 347
HpyAV CCTTC 1 cut(s) 301
HpyCH4V TGCA 4 cut(s) 122, 216, 223, 273
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 369
HpyF3I CTNAG 2 cut(s) 17, 201
Hsp92II CATG 3 cut(s) 119, 163, 294
Kzo9I GATC 4 cut(s) 134, 162, 225, 387
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 5 cut(s) 116, 255, 311, 349, 363
Lsp1109I GCAGC 2 cut(s) 106, 359
LweI GCATC 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 397
MalI GATC 4 cut(s) 136, 164, 227, 389
MboI GATC 4 cut(s) 134, 162, 225, 387
MboII GAAGA 1 cut(s) 192
MfeI CAATTG 1 cut(s) 153
MflI RGATCY 2 cut(s) 134, 387
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 4 cut(s) 153, 246, 268, 278
MlyI GAGTC 1 cut(s) 247
MnlI CCTC 3 cut(s) 85, 170, 309
MseI TTAA 1 cut(s) 281
MunI CAATTG 1 cut(s) 153
MwoI GCNNNNNNNGC 2 cut(s) 27, 369
NdeII GATC 4 cut(s) 134, 162, 225, 387
NlaIII CATG 3 cut(s) 119, 163, 294
NlaIV GGNNCC 2 cut(s) 136, 389
PagI TCATGA 1 cut(s) 159
PfeI GAWTC 1 cut(s) 347
PkrI GCNGC 2 cut(s) 121, 374
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 136, 389
PstI CTGCAG 1 cut(s) 124
PsuI RGATCY 2 cut(s) 134, 387
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 2 cut(s) 120, 373
Sau3AI GATC 4 cut(s) 134, 162, 225, 387
SchI GAGTC 1 cut(s) 247
SduI GDGCHC 1 cut(s) 18
SetI ASST 5 cut(s) 32, 202, 300, 320, 404
SfaNI GCATC 1 cut(s) 282
SfcI CTRYAG 1 cut(s) 120
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 4 cut(s) 153, 246, 268, 278
SsiI CCGC 1 cut(s) 52
TaqI TCGA 1 cut(s) 165
TasI AATT 4 cut(s) 153, 246, 268, 278
TfiI GAWTC 1 cut(s) 347
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TseI GCWGC 2 cut(s) 119, 372
TspDTI ATGAA 3 cut(s) 58, 104, 131
XapI RAATTY 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.