Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001920

Physical Location & Seq

Genomic Coordinates Forward (+)

10452917 .. 10456064

Gene Structure 3148 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG089300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGTGAGCCGAAGAACCCGAGGTCCCAAACCGGCCGCCGACGGCGACGAAGAAACCGGAAGCGGAGACAACGCAGCCGCAGAGGTTTCGGACTACGAGCAAATCAGAGACCAACGGATCAAAGAGAACAAGGAGCGAATGCAGAAGCTGGGCATTTTCGACCTTTCACTCCAGCTCAAGTCCAAACCCTCCGCCGCTTCAAAACGCGGCCGTCCGTTGAAAGACCCTTCCGATCAGACCAAAACCTCTCTCTCCCCGGCAAGGCGTTCCTCTAGGTTGAAGACTCTGGCTCCGGTGAGTTATGTGGAGATTAGGCCCAAAGGGAAGAAGGAGTCTTCATGGAATGGTGAGATTAACATAAAGGAGGGTATAAGGCCGGAGATTTATAGTGATGAGCATGAAAAGCTGTTGGGGGATTGTAAGGAGACTTGGGAACTCTCGGTTGATGGGTATGGAGAAGACAGGAAGCGCATATATGATCCGGTTAAGGGTGAAACTTGCCACCAATGCAGGCAGAAAACTCTTGGTCAGCATACACATTGCTGCAAATGTGACTTGGTCCAAGGGCAGTTTTGCGGAGATTGCTTATACATGAGATATGGAGAGAATGTGATTGAAGCCAACAAAAATCCTGATTGGGTTTGCCCTGTTTGTCGGGGCATTTGCAACTGCAGTCTTTGCCGTAAAGAAAAAGGGTGGGAGCCCACTGGTAATCTGTATAGGAAGGTTAGCACTATCAACCTTATGCATGCAAGTATTTATGGTCATTCAATTTTTTTAAGTTACATTCTTCTCCTTTTCTTTTATTTCTCAGTTGAATGCTTAGTATTTGCTTGCATTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-4CXXC_R1

Protein Analysis

281

Amino Acids

31.91

Weight (kDa)

8.54

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-4CXXC_R1	PF10497	159 - 245	2.8e-35	Zinc-finger domain of monoamine-oxidase A repressor R1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37110 AT4G37110 AT4G37110 AT4G37110
fragaria_vesca	FvH4_1g14770 FvH4_1g14770 FvH4_1g14770 FvH4_2g07200 FvH4_2g07200
malus_domestica	MD02G1160900.v1.1 MD05G1072600.v1.1 MD10G1087200.v1.1 MD10G1087400.v1.1 MD15G1275000.v1.1
prunus_persica	Prupe.7G142700_v2.0.a1 Prupe.7G142700_v2.0.a1 Prupe.8G113300_v2.0.a1 Prupe.8G113300_v2.0.a1 Prupe.8G113400_v2.0.a1 Prupe.8G113400_v2.0.a1
pyrus_communis	pycom02g12700 pycom05g06480 pycom10g06970 pycom10g08140 pycom15g23810
rosa_chinensis	RchiOBHm_Chr2g0103711 RchiOBHm_Chr6g0259631 RchiOBHm_Chr6g0259651
rosa_laevigata	RLG00000014516 RLG00000017251
rosa_multiflora	Rmu_sc0000536.1_g000015
rosa_roxburghii	Rroxscaffold_2G00139460 Rroxscaffold_7G00206930
rosa_rugosa	Rorug02G0116800 Rorug05G0590100
rosa_samantha	Rh2AG165600 Rh2BG172900 Rh2CG171600 Rh2DG171200 Rh6AG106300 Rh6BG100800 Rh6BG100900 Rh6CG095400 Rh6DG089300
rosa_wichuraiana	Rw2G012970 Rw6G009190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	207
AciI	CCGC	7 cut(s)	36, 63, 78, 192, 195, 207, 576
AclWI	GGATC	2 cut(s)	125, 473
AcoI	YGGCCR	2 cut(s)	33, 208
AfiI	CCNNNNNNNGG	2 cut(s)	261, 488
AgsI	TTSAA	6 cut(s)	201, 220, 280, 617, 771, 818
AloI	GAACNNNNNNTCC	2 cut(s)	7, 39
AluBI	AGCT	3 cut(s)	148, 175, 406
AluI	AGCT	3 cut(s)	148, 175, 406
Alw26I	GTCTC	3 cut(s)	60, 102, 419
AlwI	GGATC	2 cut(s)	125, 473
AlwNI	CAGNNNCTG	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	18
AoxI	GGCC	4 cut(s)	33, 208, 314, 374
ApeKI	GCWGC	2 cut(s)	74, 543
AspLEI	GCGC	1 cut(s)	471
AspS9I	GGNCC	3 cut(s)	23, 315, 559
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	4 cut(s)	16, 307, 359, 503
AvaI	CYCGRG	1 cut(s)	18
AvaII	GGWCC	2 cut(s)	23, 559
BanII	GRGCYC	1 cut(s)	705
BbsI	GAAGAC	3 cut(s)	287, 327, 465
BbvI	GCAGC	2 cut(s)	86, 530
BccI	CCATC	1 cut(s)	440
BceAI	ACGGC	3 cut(s)	58, 195, 666
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	3 cut(s)	60, 102, 419
BfaI	CTAG	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	670
BisI	GCNGC	6 cut(s)	36, 75, 78, 195, 208, 544
BlsI	GCNGC	6 cut(s)	37, 76, 79, 196, 209, 545
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	2 cut(s)	23, 559
BmeT110I	CYCGRG	1 cut(s)	18
BmgT120I	GGNCC	3 cut(s)	23, 315, 559
BmiI	GGNNCC	3 cut(s)	25, 291, 702
BmrFI	CCNGG	1 cut(s)	257
BpiI	GAAGAC	3 cut(s)	287, 327, 465
BpmI	CTGGAG	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	3 cut(s)	19, 255, 562
BsaWI	WCCGGW	3 cut(s)	56, 292, 481
BsaXI	ACNNNNNCTCC	4 cut(s)	274, 304, 594, 624
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 488
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	712
Bse3DI	GCAATG	1 cut(s)	538
BseDI	CCNNGG	3 cut(s)	19, 255, 562
BseLI	CCNNNNNNNGG	2 cut(s)	261, 488
BseMI	GCAATG	1 cut(s)	538
BseMII	CTCAG	1 cut(s)	825
BseNI	ACTGG	1 cut(s)	712
BseX3I	CGGCCG	2 cut(s)	33, 208
BseXI	GCAGC	2 cut(s)	86, 530
BseYI	CCCAGC	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	207
Bsh1285I	CGRYCG	2 cut(s)	36, 211
BshFI	GGCC	4 cut(s)	35, 210, 316, 376
BsiEI	CGRYCG	2 cut(s)	36, 211
BsiHKCI	CYCGRG	1 cut(s)	18
BsiSI	CCGG	6 cut(s)	32, 57, 257, 293, 377, 482
BslFI	GGGAC	1 cut(s)	9
BslI	CCNNNNNNNGG	2 cut(s)	261, 488
BsmAI	GTCTC	3 cut(s)	60, 102, 419
BsmFI	GGGAC	1 cut(s)	9
BsmI	GAATGC	2 cut(s)	144, 824
BsnI	GGCC	4 cut(s)	35, 210, 316, 376
Bso31I	GGTCTC	1 cut(s)	102
BsoBI	CYCGRG	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	705
Bsp143I	GATC	3 cut(s)	117, 232, 478
BspACI	CCGC	7 cut(s)	36, 63, 78, 192, 195, 207, 576
BspANI	GGCC	4 cut(s)	35, 210, 316, 376
BspCNI	CTCAG	1 cut(s)	824
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	3 cut(s)	25, 291, 702
BspMAI	CTGCAG	1 cut(s)	674
BspPI	GGATC	2 cut(s)	125, 473
BspTNI	GGTCTC	1 cut(s)	102
BsrDI	GCAATG	1 cut(s)	538
BsrFI	RCCGGY	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	712
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	3 cut(s)	19, 255, 562
BssMI	GATC	3 cut(s)	117, 232, 478
BssT1I	CCWWGG	1 cut(s)	562
BstAPI	GCANNNNNTGC	1 cut(s)	678
BstC8I	GCNNGC	3 cut(s)	512, 750, 835
BstDEI	CTNAG	3 cut(s)	811, 823, 843
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	3 cut(s)	120, 235, 481
BstMAI	GTCTC	3 cut(s)	60, 102, 419
BstMBI	GATC	3 cut(s)	117, 232, 478
BstMCI	CGRYCG	2 cut(s)	36, 211
BstMWI	GCNNNNNNNGC	4 cut(s)	403, 507, 582, 678
BstNSI	RCATGY	1 cut(s)	752
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	1 cut(s)	670
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	86, 530
BstV2I	GAAGAC	3 cut(s)	287, 327, 465
BstZI	CGGCCG	2 cut(s)	33, 208
BsuRI	GGCC	4 cut(s)	35, 210, 316, 376
BtsIMutI	CAGTG	1 cut(s)	705
Cac8I	GCNNGC	3 cut(s)	512, 750, 835
CaiI	CAGNNNCTG	1 cut(s)	148
CfoI	GCGC	1 cut(s)	471
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	3 cut(s)	23, 315, 559
CviAII	CATG	4 cut(s)	339, 398, 592, 749
DdeI	CTNAG	3 cut(s)	811, 823, 843
DpnI	GATC	3 cut(s)	119, 234, 480
DpnII	GATC	3 cut(s)	117, 232, 478
EaeI	YGGCCR	2 cut(s)	33, 208
EagI	CGGCCG	2 cut(s)	33, 208
EciI	GGCGGA	1 cut(s)	181
EclXI	CGGCCG	2 cut(s)	33, 208
Eco130I	CCWWGG	1 cut(s)	562
Eco24I	GRGCYC	1 cut(s)	705
Eco31I	GGTCTC	1 cut(s)	102
Eco47I	GGWCC	2 cut(s)	23, 559
Eco52I	CGGCCG	2 cut(s)	33, 208
Eco88I	CYCGRG	1 cut(s)	18
EcoO109I	RGGNCCY	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	562
EcoT22I	ATGCAT	1 cut(s)	750
EcoT38I	GRGCYC	1 cut(s)	705
ErhI	CCWWGG	1 cut(s)	562
FaeI	CATG	4 cut(s)	342, 401, 595, 752
FaqI	GGGAC	1 cut(s)	9
FatI	CATG	4 cut(s)	338, 397, 591, 748
Fnu4HI	GCNGC	6 cut(s)	36, 75, 78, 195, 208, 544
FriOI	GRGCYC	1 cut(s)	705
Fsp4HI	GCNGC	6 cut(s)	36, 75, 78, 195, 208, 544
FspBI	CTAG	1 cut(s)	273
GlaI	GCGC	1 cut(s)	470
GluI	GCNGC	6 cut(s)	36, 75, 78, 195, 208, 544
GsaI	CCCAGC	1 cut(s)	152
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	4 cut(s)	35, 210, 316, 376
HapII	CCGG	6 cut(s)	32, 57, 257, 293, 377, 482
HhaI	GCGC	1 cut(s)	471
Hin1II	CATG	4 cut(s)	342, 401, 595, 752
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HinfI	GANTC	2 cut(s)	283, 332
HpaII	CCGG	6 cut(s)	32, 57, 257, 293, 377, 482
HphI	GGTGA	4 cut(s)	16, 307, 359, 503
Hpy188I	TCNGA	4 cut(s)	91, 107, 232, 237
Hpy188III	TCNNGA	1 cut(s)	632
Hpy99I	CGWCG	2 cut(s)	44, 50
HpyAV	CCTTC	3 cut(s)	237, 322, 718
HpyCH4V	TGCA	8 cut(s)	142, 510, 546, 666, 672, 748, 752, 837
HpyF10VI	GCNNNNNNNGC	4 cut(s)	403, 507, 582, 678
HpyF3I	CTNAG	3 cut(s)	811, 823, 843
Hsp92II	CATG	4 cut(s)	342, 401, 595, 752
HspAI	GCGC	1 cut(s)	469
Kzo9I	GATC	3 cut(s)	117, 232, 478
LmnI	GCTCC	3 cut(s)	133, 295, 700
Lsp1109I	GCAGC	2 cut(s)	86, 530
MaeI	CTAG	1 cut(s)	273
MaeIII	GTNAC	2 cut(s)	551, 782
MalI	GATC	3 cut(s)	119, 234, 480
MboI	GATC	3 cut(s)	117, 232, 478
MboII	GAAGA	7 cut(s)	24, 62, 292, 327, 337, 470, 782
MhlI	GDGCHC	1 cut(s)	705
MluCI	AATT	1 cut(s)	771
MlyI	GAGTC	2 cut(s)	277, 341
MnlI	CCTC	6 cut(s)	14, 76, 199, 256, 280, 358
Mph1103I	ATGCAT	1 cut(s)	750
MseI	TTAA	3 cut(s)	354, 486, 779
MspI	CCGG	6 cut(s)	32, 57, 257, 293, 377, 482
MspR9I	CCNGG	1 cut(s)	257
Mva1269I	GAATGC	2 cut(s)	144, 824
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	4 cut(s)	403, 507, 582, 678
NciI	CCSGG	1 cut(s)	257
NdeII	GATC	3 cut(s)	117, 232, 478
NlaIII	CATG	4 cut(s)	342, 401, 595, 752
NlaIV	GGNNCC	3 cut(s)	25, 291, 702
NmuCI	GTSAC	1 cut(s)	551
NsiI	ATGCAT	1 cut(s)	750
NspI	RCATGY	1 cut(s)	752
PaeI	GCATGC	1 cut(s)	752
PctI	GAATGC	2 cut(s)	144, 824
PflFI	GACNNNGTC	1 cut(s)	557
PkrI	GCNGC	6 cut(s)	37, 76, 79, 196, 209, 545
PleI	GAGTC	2 cut(s)	277, 340
PpsI	GAGTC	2 cut(s)	277, 340
PpuMI	RGGWCCY	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	23
PspFI	CCCAGC	1 cut(s)	148
PspN4I	GGNNCC	3 cut(s)	25, 291, 702
PspPI	GGNCC	3 cut(s)	23, 315, 559
PspPPI	RGGWCCY	1 cut(s)	23
PstI	CTGCAG	1 cut(s)	674
PstNI	CAGNNNCTG	1 cut(s)	148
PsyI	GACNNNGTC	1 cut(s)	557
SaqAI	TTAA	3 cut(s)	354, 486, 779
SatI	GCNGC	6 cut(s)	36, 75, 78, 195, 208, 544
Sau3AI	GATC	3 cut(s)	117, 232, 478
Sau96I	GGNCC	3 cut(s)	23, 315, 559
SchI	GAGTC	2 cut(s)	277, 341
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	705
SfcI	CTRYAG	1 cut(s)	670
SinI	GGWCC	2 cut(s)	23, 559
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SphI	GCATGC	1 cut(s)	752
Sse9I	AATT	1 cut(s)	771
SsiI	CCGC	7 cut(s)	36, 63, 78, 192, 195, 207, 576
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	562
TaqI	TCGA	1 cut(s)	159
TasI	AATT	1 cut(s)	771
TauI	GCSGC	4 cut(s)	38, 80, 197, 210
Tru1I	TTAA	3 cut(s)	354, 486, 779
Tru9I	TTAA	3 cut(s)	354, 486, 779
TscAI	CASTG	1 cut(s)	712
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	2 cut(s)	74, 543
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	2 cut(s)	327, 414
TspGWI	ACGGA	2 cut(s)	130, 204
TspRI	CASTG	1 cut(s)	712
Tth111I	GACNNNGTC	1 cut(s)	557
VpaK11BI	GGWCC	2 cut(s)	23, 559
XceI	RCATGY	1 cut(s)	752
XspI	CTAG	1 cut(s)	273
Zsp2I	ATGCAT	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.