Rroxscaffold_7G00206930

Cell division cycle-associated 7-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001920
Physical Location & Seq
Forward (+)
56768927 .. 56771834
2908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00206930.1

Sequence Viewer

Length: 1020 bp
ATGGTGAGCCGAAGAACCCGAGGCCCCAAACCCGCCGCCGACGGCGACGAAGAAACCGGAGACAATGCAGCCGCAGAGGTTTCGGACTACGAGCAAATCCGAGACCAACGGATCAAAGAGAACAAGGAGCGAATGCAGAAGCTGGGCATTTTCGACCTTTCACTCCAGCTCAAGTCCAAACCCTCCGCCGCTTCAAAACGCGGCCGTCCGTTGAAGGACCCTTCCGATCAGACCAAAATCATAACCAAAACCTCTCTCTCCCCAGCAAGGCGTTCCTCTAGGTTGAAGACTCTGGCTCCGGTGAGTTATGTGGAGATTAGGCCCAAAGGGAAGAGGGAGTCTTCGTGGAATGGTGAGATTAATATCAAGGAGGGTATAAGGCCAGAGATTTATAGTGATGAGCATGAAAAGCTATTGGGGGATTGTAAGGAGACTTGGGAACTCTCGGTTGATGGGTATGGAGAAGACGGGAAGCGGATTTATGATCCGGTTAAGGGTGAAACTTGCCACCAATGCAGGCAGAAAACTCTTGGTCAGCATACACATTGCTGCAAATGTGACTTGGTCCAAGGGCAGTTTTGTGGAGATTGCTTATACATGAGATATGGAGAGAATGTGATCGAAGCCAGCAAAAATCCTGATTGGGTTTGCCCTGTTTGTCGGGGCATTTGCAACTGCAGTCTTTGCCGTAAAGAAAAAGGGTGGGAGCCCACTGGTAATTTGTATAGGAAGGTCATAAATCTGGGTTACAAGTCTGTGGCACATTATCTTATTCAAACCCGTCGTTCCCAACGAAAAGCAGAAACCTCAGGTGCAGAGGAATCAATGCATGATGATATGAAACAAGAAACAGAAGAGGCACACTTAACAGGGGGAGAAGAAATGGAAGAGGTTCAGTGTGTTGATGCCAAAGATTTGGGTAACATAGATGATACTGGTGCTGCCGTTGCTGGGGATTCAGTTGAAGGTGAGACAAAGGGAAAGCCGAGAAGGAGGAGCACAAGGTTGAGGAAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

339

Amino Acids

38.16

Weight (kDa)

8.11

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 161 - 257 5.7e-40 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 201
AciI CCGC 7 cut(s) 33, 36, 72, 186, 189, 201, 475
AclWI GGATC 2 cut(s) 119, 479
AcoI YGGCCR 1 cut(s) 202
AfiI CCNNNNNNNGG 3 cut(s) 267, 494, 951
AgsI TTSAA 5 cut(s) 195, 214, 286, 776, 965
AluBI AGCT 3 cut(s) 142, 169, 412
AluI AGCT 3 cut(s) 142, 169, 412
Alw21I GWGCWC 1 cut(s) 1001
Alw26I GTCTC 4 cut(s) 54, 96, 425, 965
AlwI GGATC 2 cut(s) 119, 479
AlwNI CAGNNNCTG 1 cut(s) 142
Ama87I CYCGRG 1 cut(s) 18
AoxI GGCC 4 cut(s) 22, 202, 320, 380
ApeKI GCWGC 3 cut(s) 68, 549, 941
AseI ATTAAT 1 cut(s) 360
Asp700I GAANNNNTTC 1 cut(s) 891
AspS9I GGNCC 4 cut(s) 23, 217, 321, 565
AsuHPI GGTGA 5 cut(s) 16, 313, 365, 509, 980
AvaI CYCGRG 1 cut(s) 18
AvaII GGWCC 2 cut(s) 217, 565
AxyI CCTNAGG 1 cut(s) 808
BanII GRGCYC 1 cut(s) 711
BbsI GAAGAC 3 cut(s) 293, 333, 471
Bbv12I GWGCWC 1 cut(s) 1001
BbvI GCAGC 3 cut(s) 80, 536, 928
BccI CCATC 1 cut(s) 446
BceAI ACGGC 4 cut(s) 58, 189, 672, 929
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BcoDI GTCTC 4 cut(s) 54, 96, 425, 965
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 676
BisI GCNGC 7 cut(s) 36, 69, 72, 189, 202, 550, 942
BlsI GCNGC 7 cut(s) 37, 70, 73, 190, 203, 551, 943
Bme18I GGWCC 2 cut(s) 217, 565
BmeT110I CYCGRG 1 cut(s) 18
BmgT120I GGNCC 4 cut(s) 23, 217, 321, 565
BmiI GGNNCC 4 cut(s) 25, 219, 297, 708
BmsI GCATC 1 cut(s) 895
BpiI GAAGAC 3 cut(s) 293, 333, 471
BpmI CTGGAG 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 155
BsaBI GATNNNNATC 1 cut(s) 362
BsaI GGTCTC 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 19, 568
BsaWI WCCGGW 3 cut(s) 56, 298, 487
BsaXI ACNNNNNCTCC 6 cut(s) 280, 310, 329, 359, 600, 630
Bsc4I CCNNNNNNNGG 3 cut(s) 267, 494, 951
Bse1I ACTGG 2 cut(s) 718, 940
Bse21I CCTNAGG 1 cut(s) 808
Bse3DI GCAATG 1 cut(s) 544
Bse8I GATNNNNATC 1 cut(s) 362
BseDI CCNNGG 2 cut(s) 19, 568
BseJI GATNNNNATC 1 cut(s) 362
BseLI CCNNNNNNNGG 3 cut(s) 267, 494, 951
BseMI GCAATG 1 cut(s) 544
BseMII CTCAG 1 cut(s) 822
BseNI ACTGG 2 cut(s) 718, 940
BseRI GAGGAG 1 cut(s) 1009
BseX3I CGGCCG 1 cut(s) 202
BseXI GCAGC 3 cut(s) 80, 536, 928
BseYI CCCAGC 3 cut(s) 142, 262, 950
BsgI GTGCAG 1 cut(s) 834
Bsh1236I CGCG 1 cut(s) 201
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 4 cut(s) 24, 204, 322, 382
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 1001
BsiHKCI CYCGRG 1 cut(s) 18
BsiSI CCGG 3 cut(s) 57, 299, 488
BslI CCNNNNNNNGG 3 cut(s) 267, 494, 951
BsmAI GTCTC 4 cut(s) 54, 96, 425, 965
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 4 cut(s) 24, 204, 322, 382
Bso31I GGTCTC 1 cut(s) 96
BsoBI CYCGRG 1 cut(s) 18
Bsp1286I GDGCHC 2 cut(s) 711, 1001
Bsp143I GATC 4 cut(s) 111, 226, 484, 618
BspACI CCGC 7 cut(s) 33, 36, 72, 186, 189, 201, 475
BspANI GGCC 4 cut(s) 24, 204, 322, 382
BspCNI CTCAG 1 cut(s) 821
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 4 cut(s) 25, 219, 297, 708
BspMAI CTGCAG 1 cut(s) 680
BspPI GGATC 2 cut(s) 119, 479
BspTNI GGTCTC 1 cut(s) 96
BsrDI GCAATG 1 cut(s) 544
BsrI ACTGG 2 cut(s) 718, 940
BssECI CCNNGG 2 cut(s) 19, 568
BssMI GATC 4 cut(s) 111, 226, 484, 618
BssT1I CCWWGG 1 cut(s) 568
Bst6I CTCTTC 3 cut(s) 326, 849, 882
BstAPI GCANNNNNTGC 1 cut(s) 684
BstC8I GCNNGC 2 cut(s) 518, 628
BstDEI CTNAG 1 cut(s) 808
BstFNI CGCG 1 cut(s) 201
BstKTI GATC 4 cut(s) 114, 229, 487, 621
BstMAI GTCTC 4 cut(s) 54, 96, 425, 965
BstMBI GATC 4 cut(s) 111, 226, 484, 618
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 4 cut(s) 409, 513, 684, 947
BstSFI CTRYAG 1 cut(s) 676
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 3 cut(s) 80, 536, 928
BstV2I GAAGAC 3 cut(s) 293, 333, 471
BstXI CCANNNNNNTGG 1 cut(s) 916
BstZI CGGCCG 1 cut(s) 202
Bsu36I CCTNAGG 1 cut(s) 808
BsuRI GGCC 4 cut(s) 24, 204, 322, 382
BtsIMutI CAGTG 2 cut(s) 711, 902
Cac8I GCNNGC 2 cut(s) 518, 628
CaiI CAGNNNCTG 1 cut(s) 142
Cfr13I GGNCC 4 cut(s) 23, 217, 321, 565
CviAII CATG 3 cut(s) 404, 598, 830
DdeI CTNAG 1 cut(s) 808
DpnI GATC 4 cut(s) 113, 228, 486, 620
DpnII GATC 4 cut(s) 111, 226, 484, 618
EaeI YGGCCR 1 cut(s) 202
EagI CGGCCG 1 cut(s) 202
Eam1104I CTCTTC 3 cut(s) 326, 849, 882
EarI CTCTTC 3 cut(s) 326, 849, 882
EciI GGCGGA 1 cut(s) 175
EclXI CGGCCG 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 568
Eco24I GRGCYC 1 cut(s) 711
Eco31I GGTCTC 1 cut(s) 96
Eco47I GGWCC 2 cut(s) 217, 565
Eco52I CGGCCG 1 cut(s) 202
Eco81I CCTNAGG 1 cut(s) 808
Eco88I CYCGRG 1 cut(s) 18
EcoO109I RGGNCCY 2 cut(s) 23, 217
EcoT14I CCWWGG 1 cut(s) 568
EcoT22I ATGCAT 1 cut(s) 831
EcoT38I GRGCYC 1 cut(s) 711
ErhI CCWWGG 1 cut(s) 568
FaeI CATG 3 cut(s) 407, 601, 833
FatI CATG 3 cut(s) 403, 597, 829
FauI CCCGC 1 cut(s) 40
Fnu4HI GCNGC 7 cut(s) 36, 69, 72, 189, 202, 550, 942
FriOI GRGCYC 1 cut(s) 711
Fsp4HI GCNGC 7 cut(s) 36, 69, 72, 189, 202, 550, 942
FspBI CTAG 1 cut(s) 279
GluI GCNGC 7 cut(s) 36, 69, 72, 189, 202, 550, 942
GsaI CCCAGC 3 cut(s) 146, 266, 954
GsuI CTGGAG 1 cut(s) 149
HaeIII GGCC 4 cut(s) 24, 204, 322, 382
HapII CCGG 3 cut(s) 57, 299, 488
Hin1II CATG 3 cut(s) 407, 601, 833
HinfI GANTC 4 cut(s) 289, 338, 821, 956
HpaII CCGG 3 cut(s) 57, 299, 488
HphI GGTGA 5 cut(s) 16, 313, 365, 509, 980
Hpy188I TCNGA 4 cut(s) 85, 101, 226, 231
Hpy188III TCNNGA 1 cut(s) 638
Hpy99I CGWCG 3 cut(s) 44, 50, 786
HpyAV CCTTC 5 cut(s) 208, 231, 724, 959, 984
HpyCH4V TGCA 8 cut(s) 68, 136, 516, 552, 672, 678, 815, 829
HpyF10VI GCNNNNNNNGC 4 cut(s) 409, 513, 684, 947
HpyF3I CTNAG 1 cut(s) 808
Hsp92II CATG 3 cut(s) 407, 601, 833
Kzo9I GATC 4 cut(s) 111, 226, 484, 618
LmnI GCTCC 4 cut(s) 127, 301, 706, 996
Lsp1109I GCAGC 3 cut(s) 80, 536, 928
LweI GCATC 1 cut(s) 895
MaeI CTAG 1 cut(s) 279
MaeIII GTNAC 3 cut(s) 557, 746, 920
MalI GATC 4 cut(s) 113, 228, 486, 620
MboI GATC 4 cut(s) 111, 226, 484, 618
MboII GAAGA 9 cut(s) 24, 62, 298, 333, 343, 476, 866, 890, 899
MhlI GDGCHC 2 cut(s) 711, 1001
MluCI AATT 1 cut(s) 718
MlyI GAGTC 2 cut(s) 283, 347
Mph1103I ATGCAT 1 cut(s) 831
MroXI GAANNNNTTC 1 cut(s) 891
MseI TTAA 3 cut(s) 360, 492, 866
MspI CCGG 3 cut(s) 57, 299, 488
Mva1269I GAATGC 1 cut(s) 138
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 4 cut(s) 409, 513, 684, 947
NdeII GATC 4 cut(s) 111, 226, 484, 618
NlaIII CATG 3 cut(s) 407, 601, 833
NlaIV GGNNCC 4 cut(s) 25, 219, 297, 708
NmeAIII GCCGAG 1 cut(s) 1011
NmuCI GTSAC 1 cut(s) 557
NsiI ATGCAT 1 cut(s) 831
PcsI WCGNNNNNNNCGW 1 cut(s) 790
PctI GAATGC 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 891
PfeI GAWTC 2 cut(s) 821, 956
PflFI GACNNNGTC 1 cut(s) 563
PkrI GCNGC 7 cut(s) 37, 70, 73, 190, 203, 551, 943
PleI GAGTC 2 cut(s) 283, 346
PpsI GAGTC 2 cut(s) 283, 346
PpuMI RGGWCCY 1 cut(s) 217
PshBI ATTAAT 1 cut(s) 360
Psp5II RGGWCCY 1 cut(s) 217
PspFI CCCAGC 3 cut(s) 142, 262, 950
PspN4I GGNNCC 4 cut(s) 25, 219, 297, 708
PspPI GGNCC 4 cut(s) 23, 217, 321, 565
PspPPI RGGWCCY 1 cut(s) 217
PstI CTGCAG 1 cut(s) 680
PstNI CAGNNNCTG 1 cut(s) 142
PsyI GACNNNGTC 1 cut(s) 563
SaqAI TTAA 3 cut(s) 360, 492, 866
SatI GCNGC 7 cut(s) 36, 69, 72, 189, 202, 550, 942
Sau3AI GATC 4 cut(s) 111, 226, 484, 618
Sau96I GGNCC 4 cut(s) 23, 217, 321, 565
SchI GAGTC 2 cut(s) 283, 347
SduI GDGCHC 2 cut(s) 711, 1001
SfaNI GCATC 1 cut(s) 895
SfcI CTRYAG 1 cut(s) 676
SinI GGWCC 2 cut(s) 217, 565
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 1 cut(s) 718
SsiI CCGC 7 cut(s) 33, 36, 72, 186, 189, 201, 475
SspMI CTAG 1 cut(s) 279
StyI CCWWGG 1 cut(s) 568
TaqI TCGA 2 cut(s) 153, 621
TasI AATT 1 cut(s) 718
TauI GCSGC 4 cut(s) 38, 74, 191, 204
TfiI GAWTC 2 cut(s) 821, 956
Tru1I TTAA 3 cut(s) 360, 492, 866
Tru9I TTAA 3 cut(s) 360, 492, 866
TscAI CASTG 2 cut(s) 718, 902
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 3 cut(s) 68, 549, 941
Tsp45I GTSAC 1 cut(s) 557
TspDTI ATGAA 2 cut(s) 420, 854
TspGWI ACGGA 2 cut(s) 124, 198
TspRI CASTG 2 cut(s) 718, 902
Tth111I GACNNNGTC 1 cut(s) 563
VpaK11BI GGWCC 2 cut(s) 217, 565
VspI ATTAAT 1 cut(s) 360
XmnI GAANNNNTTC 1 cut(s) 891
XspI CTAG 1 cut(s) 279
Zsp2I ATGCAT 1 cut(s) 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.