FvH4_2g07200

Cell division cycle-associated 7-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001920
Physical Location & Seq
Forward (+)
5975310 .. 5978483
3174 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07200.t2

Sequence Viewer

Length: 1026 bp
ATGGTGGCCCGATCAACCGGAGGCTCCAAACCCGCCGACGACGGCGACGAAGAAACCGCAACCGGAGACAATGCAACCGCAGAGGTCACAGACTACGAGCAAATCAGAGACCAAAGAATCAAAGCGAACAAGGAGCGAATGCAGAAGCTGGGCCTTTTCGACCTTGCGCAGAAGCTCAAGTCCAAACCCTCCGCCGCTTCAAAACCCCGCCGCGGCCGTCTGCCGAAAGACCCCTCCGATCAGACCAATCCGAAACCCCCTCTCTCCCCAGCAAGGCGCTCTTCCCGGTTGAAGACTATGGCTCCGGTGAGCTATGTGGAGATTAGGCCCAAAGGGAAGAGGGAGTCCACGTGGAACAGTGAGATTAACATTAAGGAAGGGAAAAGGCCGGAGATTTATACAGATGAAGATGAAAGGCTATTGGGGGATTGCAAGGAGACTTGGGAGCTCTCGGTTGATGGGTATGGAGAAGACAGGAAGCGGATCTATGATCCGGTTAAGGGCGAAACTTGCCACCAATGCAGGCAGAAAACTCTTGGTCAGCATACACATTGCTGCAAATGTAACTTGGTTCAAGGGCAGTTTTGCGGAGATTGCTTATACATGAGATATGGTGAGAATGTGATTGAAGCCAACAAAAATCCTGATTGGGTTTGCCCTGTTTGTCGGGGTATTTGCAACTGCAGTCTTTGCCGTAAAGAAAAAGGTTGGGAGCCCACTGGTAATCTGTATAGGAAGGTCATAAATCTGGGTTACAAGTCTGTGGCACATTATCTTATTCAAACCCGTCGTTCCCAACCAAAATCAGAAACCTCAGGTGCAGAGGAATCAGTGCAGGATGATATGAAACAAGAAACAGAAGATGGACAAGTAGCAGGGGAAAAAGAAATGGAAGAGGTTCAGCCTGTTGCTGCCAAAGATATGGGTAACATACATGATACCGGTTCTGGAGTTGCTGGGGATTCTGTTGAAGGTGAGACAAAGGAAAAGTCGAGAAGGAGGAGCACAAGGTTGAGGAAGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

342

Amino Acids

38.35

Weight (kDa)

8.45

Isoelectric Point (pI)

50.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 64 - 160 1.9e-40 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 168
AccII CGCG 1 cut(s) 213
AclWI GGATC 2 cut(s) 485, 491
AcoI YGGCCR 1 cut(s) 214
AcvI CACGTG 1 cut(s) 351
AfiI CCNNNNNNNGG 3 cut(s) 212, 273, 500
AgeI ACCGGT 1 cut(s) 941
AgsI TTSAA 6 cut(s) 201, 292, 575, 629, 782, 971
AluBI AGCT 4 cut(s) 148, 175, 312, 448
AluI AGCT 4 cut(s) 148, 175, 312, 448
Alw21I GWGCWC 2 cut(s) 450, 1007
Alw26I GTCTC 4 cut(s) 60, 102, 431, 971
AlwI GGATC 2 cut(s) 485, 491
AlwNI CAGNNNCTG 1 cut(s) 148
AoxI GGCC 5 cut(s) 6, 151, 214, 326, 386
ApeKI GCWGC 2 cut(s) 555, 911
ArsI GACNNNNNNTTYG 2 cut(s) 974, 1006
AsiGI ACCGGT 1 cut(s) 941
Asp700I GAANNNNTTC 1 cut(s) 897
AspLEI GCGC 2 cut(s) 169, 279
AspS9I GGNCC 3 cut(s) 7, 151, 327
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 3 cut(s) 319, 626, 986
AxyI CCTNAGG 1 cut(s) 814
BanII GRGCYC 2 cut(s) 450, 717
BbrPI CACGTG 1 cut(s) 351
BbsI GAAGAC 2 cut(s) 299, 477
Bbv12I GWGCWC 2 cut(s) 450, 1007
BbvI GCAGC 2 cut(s) 542, 898
BccI CCATC 2 cut(s) 452, 857
BceAI ACGGC 3 cut(s) 58, 201, 678
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 4 cut(s) 60, 102, 431, 971
BfmI CTRYAG 1 cut(s) 682
BfoI RGCGCY 1 cut(s) 280
BisI GCNGC 5 cut(s) 195, 211, 214, 556, 912
BlsI GCNGC 5 cut(s) 196, 212, 215, 557, 913
Bme1390I CCNGG 1 cut(s) 286
BmgT120I GGNCC 3 cut(s) 7, 151, 327
BmiI GGNNCC 3 cut(s) 25, 303, 714
BmrFI CCNGG 1 cut(s) 286
BpiI GAAGAC 2 cut(s) 299, 477
BpmI CTGGAG 1 cut(s) 969
BpuEI CTTGAG 1 cut(s) 161
BpuMI CCSGG 1 cut(s) 286
BsaAI YACGTR 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 211
BsaWI WCCGGW 5 cut(s) 17, 62, 304, 493, 941
BsaXI ACNNNNNCTCC 4 cut(s) 286, 316, 335, 365
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 273, 500
Bse118I RCCGGY 1 cut(s) 941
Bse1I ACTGG 1 cut(s) 724
Bse21I CCTNAGG 1 cut(s) 814
Bse3DI GCAATG 1 cut(s) 550
BseDI CCNNGG 1 cut(s) 211
BseGI GGATG 1 cut(s) 844
BseLI CCNNNNNNNGG 3 cut(s) 212, 273, 500
BseMI GCAATG 1 cut(s) 550
BseMII CTCAG 1 cut(s) 828
BseNI ACTGG 1 cut(s) 724
BseRI GAGGAG 1 cut(s) 1015
BseX3I CGGCCG 1 cut(s) 214
BseXI GCAGC 2 cut(s) 542, 898
BseYI CCCAGC 3 cut(s) 148, 268, 956
BsgI GTGCAG 2 cut(s) 840, 854
Bsh1236I CGCG 1 cut(s) 213
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 5 cut(s) 8, 153, 216, 328, 388
BshTI ACCGGT 1 cut(s) 941
BsiEI CGRYCG 1 cut(s) 217
BsiHKAI GWGCWC 2 cut(s) 450, 1007
BsiSI CCGG 7 cut(s) 18, 63, 286, 305, 389, 494, 942
BslI CCNNNNNNNGG 3 cut(s) 212, 273, 500
BsmAI GTCTC 4 cut(s) 60, 102, 431, 971
BsmI GAATGC 1 cut(s) 144
BsnI GGCC 5 cut(s) 8, 153, 216, 328, 388
Bso31I GGTCTC 1 cut(s) 102
Bsp1286I GDGCHC 3 cut(s) 450, 717, 1007
Bsp143I GATC 4 cut(s) 11, 238, 483, 490
BspANI GGCC 5 cut(s) 8, 153, 216, 328, 388
BspCNI CTCAG 1 cut(s) 827
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 3 cut(s) 25, 303, 714
BspMAI CTGCAG 1 cut(s) 686
BspPI GGATC 2 cut(s) 485, 491
BspQI GCTCTTC 1 cut(s) 286
BspTNI GGTCTC 1 cut(s) 102
BsrDI GCAATG 1 cut(s) 550
BsrFI RCCGGY 1 cut(s) 941
BsrI ACTGG 1 cut(s) 724
BssAI RCCGGY 1 cut(s) 941
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 4 cut(s) 11, 238, 483, 490
Bst4CI ACNGT 1 cut(s) 359
Bst6I CTCTTC 3 cut(s) 286, 332, 888
BstAPI GCANNNNNTGC 1 cut(s) 690
BstBAI YACGTR 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 524
BstDEI CTNAG 1 cut(s) 814
BstDSI CCRYGG 1 cut(s) 211
BstF5I GGATG 1 cut(s) 844
BstFNI CGCG 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 280
BstHHI GCGC 2 cut(s) 169, 279
BstKTI GATC 4 cut(s) 14, 241, 486, 493
BstMAI GTCTC 4 cut(s) 60, 102, 431, 971
BstMBI GATC 4 cut(s) 11, 238, 483, 490
BstMCI CGRYCG 1 cut(s) 217
BstMWI GCNNNNNNNGC 4 cut(s) 510, 519, 594, 690
BstSCI CCNGG 1 cut(s) 284
BstSFI CTRYAG 1 cut(s) 682
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 542, 898
BstV2I GAAGAC 2 cut(s) 299, 477
BstX2I RGATCY 1 cut(s) 483
BstXI CCANNNNNNTGG 1 cut(s) 922
BstYI RGATCY 1 cut(s) 483
BstZI CGGCCG 1 cut(s) 214
Bsu36I CCTNAGG 1 cut(s) 814
BsuRI GGCC 5 cut(s) 8, 153, 216, 328, 388
BtgI CCRYGG 1 cut(s) 211
BtsCI GGATG 1 cut(s) 844
BtsIMutI CAGTG 3 cut(s) 364, 717, 837
Cac8I GCNNGC 1 cut(s) 524
CaiI CAGNNNCTG 1 cut(s) 148
CfoI GCGC 2 cut(s) 169, 279
Cfr10I RCCGGY 1 cut(s) 941
Cfr13I GGNCC 3 cut(s) 7, 151, 327
Cfr42I CCGCGG 1 cut(s) 214
CspAI ACCGGT 1 cut(s) 941
CviAII CATG 2 cut(s) 604, 935
DdeI CTNAG 1 cut(s) 814
DpnI GATC 4 cut(s) 13, 240, 485, 492
DpnII GATC 4 cut(s) 11, 238, 483, 490
EaeI YGGCCR 1 cut(s) 214
EagI CGGCCG 1 cut(s) 214
Eam1104I CTCTTC 3 cut(s) 286, 332, 888
EarI CTCTTC 3 cut(s) 286, 332, 888
EciI GGCGGA 1 cut(s) 181
Ecl136II GAGCTC 1 cut(s) 448
EclXI CGGCCG 1 cut(s) 214
Eco24I GRGCYC 2 cut(s) 450, 717
Eco31I GGTCTC 1 cut(s) 102
Eco52I CGGCCG 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 448
Eco72I CACGTG 1 cut(s) 351
Eco81I CCTNAGG 1 cut(s) 814
EcoICRI GAGCTC 1 cut(s) 448
EcoT38I GRGCYC 2 cut(s) 450, 717
FaeI CATG 2 cut(s) 607, 938
FalI AAGNNNNNCTT 2 cut(s) 265, 297
FatI CATG 2 cut(s) 603, 934
FauI CCCGC 2 cut(s) 40, 215
Fnu4HI GCNGC 5 cut(s) 195, 211, 214, 556, 912
FokI GGATG 1 cut(s) 851
FriOI GRGCYC 2 cut(s) 450, 717
Fsp4HI GCNGC 5 cut(s) 195, 211, 214, 556, 912
FspI TGCGCA 1 cut(s) 168
GlaI GCGC 2 cut(s) 168, 278
GluI GCNGC 5 cut(s) 195, 211, 214, 556, 912
GsaI CCCAGC 3 cut(s) 152, 272, 960
GsuI CTGGAG 1 cut(s) 969
HaeII RGCGCY 1 cut(s) 280
HaeIII GGCC 5 cut(s) 8, 153, 216, 328, 388
HapII CCGG 7 cut(s) 18, 63, 286, 305, 389, 494, 942
HhaI GCGC 2 cut(s) 169, 279
Hin1II CATG 2 cut(s) 607, 938
Hin6I GCGC 2 cut(s) 167, 277
HinP1I GCGC 2 cut(s) 167, 277
HinfI GANTC 4 cut(s) 117, 344, 827, 962
HpaII CCGG 7 cut(s) 18, 63, 286, 305, 389, 494, 942
HphI GGTGA 3 cut(s) 319, 626, 986
Hpy166II GTNNAC 1 cut(s) 348
Hpy188I TCNGA 5 cut(s) 107, 238, 243, 252, 808
Hpy188III TCNNGA 3 cut(s) 644, 948, 993
Hpy8I GTNNAC 1 cut(s) 348
Hpy99I CGWCG 4 cut(s) 41, 44, 50, 792
HpyAV CCTTC 4 cut(s) 371, 730, 965, 990
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4IV ACGT 1 cut(s) 350
HpyCH4V TGCA 9 cut(s) 74, 142, 432, 522, 558, 678, 684, 821, 835
HpyF10VI GCNNNNNNNGC 4 cut(s) 510, 519, 594, 690
HpyF3I CTNAG 1 cut(s) 814
HpySE526I ACGT 1 cut(s) 350
Hsp92II CATG 2 cut(s) 607, 938
HspAI GCGC 2 cut(s) 167, 277
KspI CCGCGG 1 cut(s) 214
Kzo9I GATC 4 cut(s) 11, 238, 483, 490
LguI GCTCTTC 1 cut(s) 286
LmnI GCTCC 6 cut(s) 29, 133, 307, 445, 712, 1002
Lsp1109I GCAGC 2 cut(s) 542, 898
MaeII ACGT 1 cut(s) 350
MaeIII GTNAC 4 cut(s) 85, 563, 752, 926
MalI GATC 4 cut(s) 13, 240, 485, 492
MboI GATC 4 cut(s) 11, 238, 483, 490
MboII GAAGA 8 cut(s) 62, 273, 304, 349, 419, 482, 872, 905
MflI RGATCY 1 cut(s) 483
MhlI GDGCHC 3 cut(s) 450, 717, 1007
MlyI GAGTC 1 cut(s) 353
MroXI GAANNNNTTC 1 cut(s) 897
MseI TTAA 3 cut(s) 366, 372, 498
MspA1I CMGCKG 1 cut(s) 213
MspI CCGG 7 cut(s) 18, 63, 286, 305, 389, 494, 942
MspR9I CCNGG 1 cut(s) 286
Mva1269I GAATGC 1 cut(s) 144
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 4 cut(s) 510, 519, 594, 690
NciI CCSGG 1 cut(s) 286
NdeII GATC 4 cut(s) 11, 238, 483, 490
NlaIII CATG 2 cut(s) 607, 938
NlaIV GGNNCC 3 cut(s) 25, 303, 714
NmuCI GTSAC 1 cut(s) 85
NsbI TGCGCA 1 cut(s) 168
PciSI GCTCTTC 1 cut(s) 286
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 897
PfeI GAWTC 3 cut(s) 117, 827, 962
PinAI ACCGGT 1 cut(s) 941
PkrI GCNGC 5 cut(s) 196, 212, 215, 557, 913
PleI GAGTC 1 cut(s) 352
PmaCI CACGTG 1 cut(s) 351
PmlI CACGTG 1 cut(s) 351
PpsI GAGTC 1 cut(s) 352
Ppu21I YACGTR 1 cut(s) 351
Psp124BI GAGCTC 1 cut(s) 450
PspCI CACGTG 1 cut(s) 351
PspFI CCCAGC 3 cut(s) 148, 268, 956
PspN4I GGNNCC 3 cut(s) 25, 303, 714
PspPI GGNCC 3 cut(s) 7, 151, 327
PstI CTGCAG 1 cut(s) 686
PstNI CAGNNNCTG 1 cut(s) 148
PsuI RGATCY 1 cut(s) 483
SacI GAGCTC 1 cut(s) 450
SacII CCGCGG 1 cut(s) 214
SapI GCTCTTC 1 cut(s) 286
SaqAI TTAA 3 cut(s) 366, 372, 498
SatI GCNGC 5 cut(s) 195, 211, 214, 556, 912
Sau3AI GATC 4 cut(s) 11, 238, 483, 490
Sau96I GGNCC 3 cut(s) 7, 151, 327
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 3 cut(s) 450, 717, 1007
SfcI CTRYAG 1 cut(s) 682
Sfr303I CCGCGG 1 cut(s) 214
SgrBI CCGCGG 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SstI GAGCTC 1 cut(s) 450
StyD4I CCNGG 1 cut(s) 284
TaaI ACNGT 1 cut(s) 359
TaiI ACGT 1 cut(s) 353
TaqI TCGA 2 cut(s) 159, 992
TauI GCSGC 3 cut(s) 197, 213, 216
TfiI GAWTC 3 cut(s) 117, 827, 962
Tru1I TTAA 3 cut(s) 366, 372, 498
Tru9I TTAA 3 cut(s) 366, 372, 498
TscAI CASTG 3 cut(s) 364, 724, 837
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 2 cut(s) 555, 911
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 3 cut(s) 420, 426, 860
TspRI CASTG 3 cut(s) 364, 724, 837
XmnI GAANNNNTTC 1 cut(s) 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.