Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001920

Physical Location & Seq

Genomic Coordinates Reverse (-)

12932011 .. 12932959

Gene Structure 949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1087200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCTTCATCTTCTTCAAAGCTACAACCACTTCTTCCTTCTGGGGCATCTGCAACTGGGGTGGGAACCCACCGGTAATCTGTATAGAAAGGTCATAAAACTGGGTTACAAATCTGTGGCACACTATCTTATCCAAACCCACCGTTCCCCAACAAACTCAGAGACCGCAGGTGAAGAAGTTGTAGCAGAGGGATCAACTCCTTCAGTGGAACCCTCTTCACATGATGAATCTTCAGGATCAGGCAATGGCCTTGATACTAGTGAGCATGTTGATGACAATGATGTGGGCAACGTAGATGCTGTTGCTGCTGGTGATGCTGTTGACGGCAAGGCAAAGAAAAAGCTGAGAAGGAATACAAGGCTGAGCAAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-4CXXC_R1

Protein Analysis

125

Amino Acids

13.47

Weight (kDa)

5.94

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37110 AT4G37110 AT4G37110 AT4G37110
fragaria_vesca	FvH4_1g14770 FvH4_1g14770 FvH4_1g14770 FvH4_2g07200 FvH4_2g07200
malus_domestica	MD02G1160900.v1.1 MD05G1072600.v1.1 MD10G1087200.v1.1 MD10G1087400.v1.1 MD15G1275000.v1.1
prunus_persica	Prupe.7G142700_v2.0.a1 Prupe.7G142700_v2.0.a1 Prupe.8G113300_v2.0.a1 Prupe.8G113300_v2.0.a1 Prupe.8G113400_v2.0.a1 Prupe.8G113400_v2.0.a1
pyrus_communis	pycom02g12700 pycom05g06480 pycom10g06970 pycom10g08140 pycom15g23810
rosa_chinensis	RchiOBHm_Chr2g0103711 RchiOBHm_Chr6g0259631 RchiOBHm_Chr6g0259651
rosa_laevigata	RLG00000014516 RLG00000017251
rosa_multiflora	Rmu_sc0000536.1_g000015
rosa_roxburghii	Rroxscaffold_2G00139460 Rroxscaffold_7G00206930
rosa_rugosa	Rorug02G0116800 Rorug05G0590100
rosa_samantha	Rh2AG165600 Rh2BG172900 Rh2CG171600 Rh2DG171200 Rh6AG106300 Rh6BG100800 Rh6BG100900 Rh6CG095400 Rh6DG089300
rosa_wichuraiana	Rw2G012970 Rw6G009190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	158
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	2 cut(s)	199, 244
AcuI	CTGAAG	2 cut(s)	186, 216
AgeI	ACCGGT	1 cut(s)	71
AgsI	TTSAA	1 cut(s)	17
AhlI	ACTAGT	1 cut(s)	257
AluBI	AGCT	2 cut(s)	21, 343
AluI	AGCT	2 cut(s)	21, 343
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	2 cut(s)	199, 244
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	1 cut(s)	305
AsiGI	ACCGGT	1 cut(s)	71
AsuHPI	GGTGA	2 cut(s)	182, 323
BbvI	GCAGC	1 cut(s)	292
BceAI	ACGGC	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	155
BcuI	ACTAGT	1 cut(s)	257
BfaI	CTAG	1 cut(s)	258
BfuAI	ACCTGC	1 cut(s)	158
BisI	GCNGC	1 cut(s)	306
BlpI	GCTNAGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	307
BmiI	GGNNCC	2 cut(s)	66, 210
BmrI	ACTGGG	2 cut(s)	65, 110
BmsI	GCATC	3 cut(s)	55, 286, 304
BmuI	ACTGGG	2 cut(s)	65, 110
Bpu1102I	GCTNAGC	1 cut(s)	362
BsaI	GGTCTC	1 cut(s)	155
BsaWI	WCCGGW	1 cut(s)	71
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	2 cut(s)	60, 105
Bse3DI	GCAATG	1 cut(s)	250
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	3 cut(s)	171, 335, 353
BseNI	ACTGG	2 cut(s)	60, 105
BseXI	GCAGC	1 cut(s)	292
BshFI	GGCC	1 cut(s)	249
BshTI	ACCGGT	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	249
Bso31I	GGTCTC	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	191, 236
Bsp1720I	GCTNAGC	1 cut(s)	362
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	3 cut(s)	170, 336, 354
BspLI	GGNNCC	2 cut(s)	66, 210
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	2 cut(s)	199, 244
BspTNI	GGTCTC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	2 cut(s)	60, 105
BssAI	RCCGGY	1 cut(s)	71
BssMI	GATC	2 cut(s)	191, 236
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	220
BstDEI	CTNAG	3 cut(s)	157, 344, 362
BstKTI	GATC	2 cut(s)	194, 239
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	2 cut(s)	191, 236
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 314
BstNSI	RCATGY	1 cut(s)	269
BstV1I	GCAGC	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	249
BtsIMutI	CAGTG	1 cut(s)	210
BveI	ACCTGC	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	71
CspAI	ACCGGT	1 cut(s)	71
CspCI	CAANNNNNGTGG	2 cut(s)	41, 76
CviAII	CATG	2 cut(s)	221, 266
CviJI	RGCY	4 cut(s)	21, 249, 343, 361
CviKI_1	RGCY	4 cut(s)	21, 249, 343, 361
DdeI	CTNAG	3 cut(s)	157, 344, 362
DpnI	GATC	2 cut(s)	193, 238
DpnII	GATC	2 cut(s)	191, 236
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
Eco31I	GGTCTC	1 cut(s)	155
Eco57I	CTGAAG	2 cut(s)	186, 216
FaeI	CATG	2 cut(s)	224, 269
FaiI	YATR	4 cut(s)	84, 95, 222, 267
FatI	CATG	2 cut(s)	220, 265
Fnu4HI	GCNGC	1 cut(s)	306
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	2 cut(s)	224, 269
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	2 cut(s)	182, 323
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	1 cut(s)	234
Hpy8I	GTNNAC	1 cut(s)	322
HpyAV	CCTTC	3 cut(s)	47, 210, 342
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	1 cut(s)	52
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 314
HpyF3I	CTNAG	3 cut(s)	157, 344, 362
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	224, 269
Kzo9I	GATC	2 cut(s)	191, 236
LpnPI	CCDG	8 cut(s)	26, 41, 85, 86, 153, 219, 225, 294
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	3 cut(s)	55, 286, 304
MaeI	CTAG	1 cut(s)	258
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	2 cut(s)	193, 238
MboI	GATC	2 cut(s)	191, 236
MboII	GAAGA	5 cut(s)	5, 25, 185, 207, 222
MnlI	CCTC	2 cut(s)	181, 223
MseI	TTAA	1 cut(s)	373
MslI	CAYNNNNRTG	1 cut(s)	270
MspI	CCGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	305, 314
NdeII	GATC	2 cut(s)	191, 236
NlaIII	CATG	2 cut(s)	224, 269
NlaIV	GGNNCC	2 cut(s)	66, 210
NspI	RCATGY	1 cut(s)	269
PaqCI	CACCTGC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	227
PinAI	ACCGGT	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	66, 210
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	373
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	2 cut(s)	191, 236
SetI	ASST	5 cut(s)	23, 93, 172, 294, 345
SfaNI	GCATC	3 cut(s)	55, 286, 304
SmiMI	CAYNNNNRTG	1 cut(s)	270
SpeI	ACTAGT	1 cut(s)	257
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	373
Tru9I	TTAA	1 cut(s)	373
TscAI	CASTG	1 cut(s)	210
TseI	GCWGC	1 cut(s)	305
TspDTI	ATGAA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	210
XceI	RCATGY	1 cut(s)	269
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.