Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001920

Physical Location & Seq

Genomic Coordinates Forward (+)

10533268 .. 10536415

Gene Structure 3148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG095400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGTGAGCCGAAGAACCCGAGGTCCCAAACCGGCCGCCGACGGCGACGAAGAAACCGGAAGCGGAGACAACGCAGCCGCAGAGGTTTCGGACTACGAGCAAATCAGAGACCAACGGATCAAAGAGAACAAGGAGCGAATGCAGAAGCTGGGCATTTTCGACCTTTCACTCCAGCTCAAGTCCAAACCCTCCGCCGCTTCAAAACGCGGCCGTCCGTTGAAAGACCCTTCCGATCAGACCAAAACCTCTCTCTCCCCGGCAAGGCGTTCCTCTAGGTTGAAGACTCTGGCTCCGGTGAGTTATGTGGAGATTAGGCCCAAAGGGAAGAAGGAGTCTTCATGGAATGGTGAGATTAACATAAAGGAGGGTATAAGGCCGGAGATTTATAGTGATGAGCATGAAAAGCTGTTGGGGGATTGTAAGGAGACTTGGGAACTCTCGGTTGATGGGTATGGAGAAGACAGGAAGCGCATATATGATCCGGTTAAGGGTGAAACTTGCCACCAATGCAGGCAGAAAACTCTTGGTCAGCATACACATTGCTGCAAATGTGACTTGGTCCAAGGGCAGTTTTGCGGAGATTGCTTATACATGAGATATGGAGAGAATGTGATTGAAGCCAACAAAAATCCTGATTGGGTTTGCCCTGTTTGTCGGGGCATTTGCAACTGCAGTCTTTGCCGTAAAGAAAAAGGGTGGGAGCCCACTGGTAATCTGTATAGGAAGGTCATAAATCTGGGTTACAAGTCTGTGGCACATTATCTTATTCAAACCCGTCGTTCCCAACCAAAATCAGAGACCTCGGGTGCAGAGGAATCAATGCATGATGATATGAAACAAGAAACAGAAGAGGCACAATTAACAGGGGGAGAAGAAATGGAAGAGGTTCACTGTGTTGATGCCAAAGATTTGGGTAACATAGATGATACTGGTGCTGGCGTTGCTGGGGATTCAGTTGAAGGTGAGACAAAGGAAAAGCTGAGAAGGAGGAGCACAAGGTTGAGGAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-4CXXC_R1

Protein Analysis

337

Amino Acids

37.98

Weight (kDa)

7.47

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-4CXXC_R1	PF10497	159 - 255	4.1e-40	Zinc-finger domain of monoamine-oxidase A repressor R1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37110 AT4G37110 AT4G37110 AT4G37110
fragaria_vesca	FvH4_1g14770 FvH4_1g14770 FvH4_1g14770 FvH4_2g07200 FvH4_2g07200
malus_domestica	MD02G1160900.v1.1 MD05G1072600.v1.1 MD10G1087200.v1.1 MD10G1087400.v1.1 MD15G1275000.v1.1
prunus_persica	Prupe.7G142700_v2.0.a1 Prupe.7G142700_v2.0.a1 Prupe.8G113300_v2.0.a1 Prupe.8G113300_v2.0.a1 Prupe.8G113400_v2.0.a1 Prupe.8G113400_v2.0.a1
pyrus_communis	pycom02g12700 pycom05g06480 pycom10g06970 pycom10g08140 pycom15g23810
rosa_chinensis	RchiOBHm_Chr2g0103711 RchiOBHm_Chr6g0259631 RchiOBHm_Chr6g0259651
rosa_laevigata	RLG00000014516 RLG00000017251
rosa_multiflora	Rmu_sc0000536.1_g000015
rosa_roxburghii	Rroxscaffold_2G00139460 Rroxscaffold_7G00206930
rosa_rugosa	Rorug02G0116800 Rorug05G0590100
rosa_samantha	Rh2AG165600 Rh2BG172900 Rh2CG171600 Rh2DG171200 Rh6AG106300 Rh6BG100800 Rh6BG100900 Rh6CG095400 Rh6DG089300
rosa_wichuraiana	Rw2G012970 Rw6G009190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	207
AciI	CCGC	7 cut(s)	36, 63, 78, 192, 195, 207, 576
AclWI	GGATC	2 cut(s)	125, 473
AcoI	YGGCCR	2 cut(s)	33, 208
AfiI	CCNNNNNNNGG	2 cut(s)	261, 488
AgsI	TTSAA	6 cut(s)	201, 220, 280, 617, 770, 959
AloI	GAACNNNNNNTCC	2 cut(s)	7, 39
AluBI	AGCT	4 cut(s)	148, 175, 406, 979
AluI	AGCT	4 cut(s)	148, 175, 406, 979
Alw21I	GWGCWC	1 cut(s)	995
Alw26I	GTCTC	5 cut(s)	60, 102, 419, 791, 959
AlwI	GGATC	2 cut(s)	125, 473
AlwNI	CAGNNNCTG	1 cut(s)	148
Ama87I	CYCGRG	2 cut(s)	18, 802
AoxI	GGCC	4 cut(s)	33, 208, 314, 374
ApeKI	GCWGC	2 cut(s)	74, 543
Asp700I	GAANNNNTTC	1 cut(s)	885
AspLEI	GCGC	1 cut(s)	471
AspS9I	GGNCC	3 cut(s)	23, 315, 559
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	5 cut(s)	16, 307, 359, 503, 974
AvaI	CYCGRG	2 cut(s)	18, 802
AvaII	GGWCC	2 cut(s)	23, 559
BanII	GRGCYC	1 cut(s)	705
BbsI	GAAGAC	3 cut(s)	287, 327, 465
Bbv12I	GWGCWC	1 cut(s)	995
BbvI	GCAGC	2 cut(s)	86, 530
BccI	CCATC	1 cut(s)	440
BceAI	ACGGC	3 cut(s)	58, 195, 666
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	5 cut(s)	60, 102, 419, 791, 959
BfaI	CTAG	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	670
BisI	GCNGC	6 cut(s)	36, 75, 78, 195, 208, 544
BlsI	GCNGC	6 cut(s)	37, 76, 79, 196, 209, 545
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	2 cut(s)	23, 559
BmeT110I	CYCGRG	2 cut(s)	18, 802
BmgT120I	GGNCC	3 cut(s)	23, 315, 559
BmiI	GGNNCC	3 cut(s)	25, 291, 702
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	1 cut(s)	889
BpiI	GAAGAC	3 cut(s)	287, 327, 465
BpmI	CTGGAG	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	257
BsaI	GGTCTC	2 cut(s)	102, 791
BsaJI	CCNNGG	4 cut(s)	19, 255, 562, 801
BsaWI	WCCGGW	3 cut(s)	56, 292, 481
BsaXI	ACNNNNNCTCC	4 cut(s)	274, 304, 594, 624
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 488
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	712, 934
Bse3DI	GCAATG	1 cut(s)	538
BseDI	CCNNGG	4 cut(s)	19, 255, 562, 801
BseLI	CCNNNNNNNGG	2 cut(s)	261, 488
BseMI	GCAATG	1 cut(s)	538
BseMII	CTCAG	1 cut(s)	971
BseNI	ACTGG	2 cut(s)	712, 934
BseRI	GAGGAG	1 cut(s)	1003
BseX3I	CGGCCG	2 cut(s)	33, 208
BseXI	GCAGC	2 cut(s)	86, 530
BseYI	CCCAGC	2 cut(s)	148, 944
BsgI	GTGCAG	1 cut(s)	828
Bsh1236I	CGCG	1 cut(s)	207
Bsh1285I	CGRYCG	2 cut(s)	36, 211
BshFI	GGCC	4 cut(s)	35, 210, 316, 376
BsiEI	CGRYCG	2 cut(s)	36, 211
BsiHKAI	GWGCWC	1 cut(s)	995
BsiHKCI	CYCGRG	2 cut(s)	18, 802
BsiSI	CCGG	6 cut(s)	32, 57, 257, 293, 377, 482
BslFI	GGGAC	1 cut(s)	9
BslI	CCNNNNNNNGG	2 cut(s)	261, 488
BsmAI	GTCTC	5 cut(s)	60, 102, 419, 791, 959
BsmFI	GGGAC	1 cut(s)	9
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	4 cut(s)	35, 210, 316, 376
Bso31I	GGTCTC	2 cut(s)	102, 791
BsoBI	CYCGRG	2 cut(s)	18, 802
Bsp1286I	GDGCHC	2 cut(s)	705, 995
Bsp143I	GATC	3 cut(s)	117, 232, 478
BspACI	CCGC	7 cut(s)	36, 63, 78, 192, 195, 207, 576
BspANI	GGCC	4 cut(s)	35, 210, 316, 376
BspCNI	CTCAG	1 cut(s)	972
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	3 cut(s)	25, 291, 702
BspMAI	CTGCAG	1 cut(s)	674
BspPI	GGATC	2 cut(s)	125, 473
BspTNI	GGTCTC	2 cut(s)	102, 791
BsrDI	GCAATG	1 cut(s)	538
BsrFI	RCCGGY	1 cut(s)	31
BsrI	ACTGG	2 cut(s)	712, 934
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	4 cut(s)	19, 255, 562, 801
BssMI	GATC	3 cut(s)	117, 232, 478
BssT1I	CCWWGG	1 cut(s)	562
Bst4CI	ACNGT	1 cut(s)	893
Bst6I	CTCTTC	2 cut(s)	843, 876
BstAPI	GCANNNNNTGC	1 cut(s)	678
BstC8I	GCNNGC	2 cut(s)	512, 937
BstDEI	CTNAG	1 cut(s)	980
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	3 cut(s)	120, 235, 481
BstMAI	GTCTC	5 cut(s)	60, 102, 419, 791, 959
BstMBI	GATC	3 cut(s)	117, 232, 478
BstMCI	CGRYCG	2 cut(s)	36, 211
BstMWI	GCNNNNNNNGC	5 cut(s)	403, 507, 582, 678, 941
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	1 cut(s)	670
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	86, 530
BstV2I	GAAGAC	3 cut(s)	287, 327, 465
BstXI	CCANNNNNNTGG	1 cut(s)	910
BstZI	CGGCCG	2 cut(s)	33, 208
BsuRI	GGCC	4 cut(s)	35, 210, 316, 376
BtsIMutI	CAGTG	2 cut(s)	705, 889
Cac8I	GCNNGC	2 cut(s)	512, 937
CaiI	CAGNNNCTG	1 cut(s)	148
CfoI	GCGC	1 cut(s)	471
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	3 cut(s)	23, 315, 559
CviAII	CATG	4 cut(s)	339, 398, 592, 824
DdeI	CTNAG	1 cut(s)	980
DpnI	GATC	3 cut(s)	119, 234, 480
DpnII	GATC	3 cut(s)	117, 232, 478
EaeI	YGGCCR	2 cut(s)	33, 208
EagI	CGGCCG	2 cut(s)	33, 208
Eam1104I	CTCTTC	2 cut(s)	843, 876
EarI	CTCTTC	2 cut(s)	843, 876
EciI	GGCGGA	1 cut(s)	181
EclXI	CGGCCG	2 cut(s)	33, 208
Eco130I	CCWWGG	1 cut(s)	562
Eco24I	GRGCYC	1 cut(s)	705
Eco31I	GGTCTC	2 cut(s)	102, 791
Eco47I	GGWCC	2 cut(s)	23, 559
Eco52I	CGGCCG	2 cut(s)	33, 208
Eco88I	CYCGRG	2 cut(s)	18, 802
EcoO109I	RGGNCCY	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	562
EcoT22I	ATGCAT	1 cut(s)	825
EcoT38I	GRGCYC	1 cut(s)	705
ErhI	CCWWGG	1 cut(s)	562
FaeI	CATG	4 cut(s)	342, 401, 595, 827
FaqI	GGGAC	1 cut(s)	9
FatI	CATG	4 cut(s)	338, 397, 591, 823
Fnu4HI	GCNGC	6 cut(s)	36, 75, 78, 195, 208, 544
FriOI	GRGCYC	1 cut(s)	705
Fsp4HI	GCNGC	6 cut(s)	36, 75, 78, 195, 208, 544
FspBI	CTAG	1 cut(s)	273
GlaI	GCGC	1 cut(s)	470
GluI	GCNGC	6 cut(s)	36, 75, 78, 195, 208, 544
GsaI	CCCAGC	2 cut(s)	152, 948
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	4 cut(s)	35, 210, 316, 376
HapII	CCGG	6 cut(s)	32, 57, 257, 293, 377, 482
HhaI	GCGC	1 cut(s)	471
Hin1II	CATG	4 cut(s)	342, 401, 595, 827
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HinfI	GANTC	4 cut(s)	283, 332, 815, 950
HpaII	CCGG	6 cut(s)	32, 57, 257, 293, 377, 482
HphI	GGTGA	5 cut(s)	16, 307, 359, 503, 974
Hpy166II	GTNNAC	1 cut(s)	889
Hpy188I	TCNGA	5 cut(s)	91, 107, 232, 237, 796
Hpy188III	TCNNGA	1 cut(s)	632
Hpy8I	GTNNAC	1 cut(s)	889
Hpy99I	CGWCG	3 cut(s)	44, 50, 780
HpyAV	CCTTC	5 cut(s)	237, 322, 718, 953, 978
HpyCH4III	ACNGT	1 cut(s)	893
HpyCH4V	TGCA	7 cut(s)	142, 510, 546, 666, 672, 809, 823
HpyF10VI	GCNNNNNNNGC	5 cut(s)	403, 507, 582, 678, 941
HpyF3I	CTNAG	1 cut(s)	980
Hsp92II	CATG	4 cut(s)	342, 401, 595, 827
HspAI	GCGC	1 cut(s)	469
Kzo9I	GATC	3 cut(s)	117, 232, 478
LmnI	GCTCC	4 cut(s)	133, 295, 700, 990
Lsp1109I	GCAGC	2 cut(s)	86, 530
LweI	GCATC	1 cut(s)	889
MaeI	CTAG	1 cut(s)	273
MaeIII	GTNAC	3 cut(s)	551, 740, 914
MalI	GATC	3 cut(s)	119, 234, 480
MboI	GATC	3 cut(s)	117, 232, 478
MboII	GAAGA	9 cut(s)	24, 62, 292, 327, 337, 470, 860, 884, 893
MhlI	GDGCHC	2 cut(s)	705, 995
MluCI	AATT	1 cut(s)	857
MlyI	GAGTC	2 cut(s)	277, 341
Mph1103I	ATGCAT	1 cut(s)	825
MroXI	GAANNNNTTC	1 cut(s)	885
MseI	TTAA	3 cut(s)	354, 486, 860
MspI	CCGG	6 cut(s)	32, 57, 257, 293, 377, 482
MspR9I	CCNGG	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	144
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	5 cut(s)	403, 507, 582, 678, 941
NciI	CCSGG	1 cut(s)	257
NdeII	GATC	3 cut(s)	117, 232, 478
NlaIII	CATG	4 cut(s)	342, 401, 595, 827
NlaIV	GGNNCC	3 cut(s)	25, 291, 702
NmuCI	GTSAC	1 cut(s)	551
NsiI	ATGCAT	1 cut(s)	825
PctI	GAATGC	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	885
PfeI	GAWTC	2 cut(s)	815, 950
PflFI	GACNNNGTC	1 cut(s)	557
PkrI	GCNGC	6 cut(s)	37, 76, 79, 196, 209, 545
PleI	GAGTC	2 cut(s)	277, 340
PpsI	GAGTC	2 cut(s)	277, 340
PpuMI	RGGWCCY	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	23
PspFI	CCCAGC	2 cut(s)	148, 944
PspN4I	GGNNCC	3 cut(s)	25, 291, 702
PspPI	GGNCC	3 cut(s)	23, 315, 559
PspPPI	RGGWCCY	1 cut(s)	23
PstI	CTGCAG	1 cut(s)	674
PstNI	CAGNNNCTG	1 cut(s)	148
PsyI	GACNNNGTC	1 cut(s)	557
SaqAI	TTAA	3 cut(s)	354, 486, 860
SatI	GCNGC	6 cut(s)	36, 75, 78, 195, 208, 544
Sau3AI	GATC	3 cut(s)	117, 232, 478
Sau96I	GGNCC	3 cut(s)	23, 315, 559
SchI	GAGTC	2 cut(s)	277, 341
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	2 cut(s)	705, 995
SfaNI	GCATC	1 cut(s)	889
SfcI	CTRYAG	1 cut(s)	670
SinI	GGWCC	2 cut(s)	23, 559
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	1 cut(s)	857
SsiI	CCGC	7 cut(s)	36, 63, 78, 192, 195, 207, 576
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	562
TaaI	ACNGT	1 cut(s)	893
TaqI	TCGA	1 cut(s)	159
TasI	AATT	1 cut(s)	857
TauI	GCSGC	4 cut(s)	38, 80, 197, 210
TfiI	GAWTC	2 cut(s)	815, 950
Tru1I	TTAA	3 cut(s)	354, 486, 860
Tru9I	TTAA	3 cut(s)	354, 486, 860
TscAI	CASTG	2 cut(s)	712, 896
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	2 cut(s)	74, 543
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	3 cut(s)	327, 414, 848
TspGWI	ACGGA	2 cut(s)	130, 204
TspRI	CASTG	2 cut(s)	712, 896
Tth111I	GACNNNGTC	1 cut(s)	557
VpaK11BI	GGWCC	2 cut(s)	23, 559
XmnI	GAANNNNTTC	1 cut(s)	885
XspI	CTAG	1 cut(s)	273
Zsp2I	ATGCAT	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.