MD05G1072600.v1.1

Cell division cycle-associated 7-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0001920
Physical Location & Seq
Forward (+)
15372534 .. 15375740
3207 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1072600.v1.1.491

Sequence Viewer

Length: 1011 bp
ATGGCGGTTCTGAGAAATCGAGGCGGAGGAAACTCCGGAGAGAACGGCGGAGCAACCGTAGAGACTGAAAGCGCAGGTGCTTCAGGGTACGAGCAGTTCAGGGACCAAAGGATCAGAGAGAACAAGGAGAGATTGCAAAAGCTGGGCATTTTGGACCTTGCCCTGAAGCTCAAGACCGAAGCTGCCGCCCCAAAACGTCCCCACCGGCCTAAAACCCACAGCCCACTTCCTGGTTCCGGATCCCCCAGGCGCTCTTCTAGGTTGAAGAGCGTGGCTCCAGTAGATTATGTGCAAAAGAAGAGGCCTATGAAGAAAGACGAGAACCCAAAGAGCCCAAAGAGGAGTGTTGAAATTTTTATAAAGGAAGGTTCAAGGCCAGAGATCTATACAGAGGAGCATGAGAAGCTGTTAGGGGATTGCGTTGAAAGCTGGGAGTTGGGTGTTGATGGCTATGGGGAAGATGGGAGGCGCATTTATGATCCGGTTAAGGGAGAATTTTGCCACCAATGCAGGCATAAAACTCTTGGTCATCATACACAGTGCTGGAAATGTGACTGGGTCCAAGGGCAGTTTTGTGGAGATTGCTTATACATGAGATATGGAGAGAATGTTATGGAAGCCAGCGAAAATCCTGATTGGACATGTCCTGTTTGTCGGGGCATCTGTAACTGCAATTGCTGCCGTCAAGTGAAGGGGTGGGAACCCACTGGTAATGTGTATAGAAAGGTCGTAAAATTGGGTTACAAATCTGTGGCACATTATCTCATTCAAAGCCGCCATCCCTCAACAAACACAGAAACCACAGGTGAAGAGGTTCTTGCAGAGGGATCAACTCCTTCAGCAGAGAGCTTTTCACATGATGAATCTTCAGGAATTGGCAGTGGCTCTGATACTAGCAAGCATGTTGGTGACAACGATGTGGGTAATGCAGATGCTGTTGCTGCTGATGTTGCTGTTAACAGTGAGGCAAAGAAAAAGCTGAGAAGGAGTACAAGGCTGAGTGGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

337

Amino Acids

37.15

Weight (kDa)

8.48

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 159 - 255 4.1e-36 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 359
AarI CACCTGC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 65
AccB7I CCANNNNNTGG 1 cut(s) 230
AccIII TCCGGA 2 cut(s) 35, 236
AciI CCGC 5 cut(s) 5, 24, 48, 186, 775
AclWI GGATC 5 cut(s) 119, 234, 247, 473, 835
AcsI RAATTY 2 cut(s) 351, 494
AcuI CTGAAG 4 cut(s) 66, 185, 822, 852
AfaI GTAC 2 cut(s) 89, 991
AfiI CCNNNNNNNGG 3 cut(s) 230, 236, 488
AflIII ACRYGT 1 cut(s) 641
AgsI TTSAA 5 cut(s) 265, 350, 372, 425, 770
AjnI CCWGG 2 cut(s) 229, 245
AluBI AGCT 7 cut(s) 142, 169, 182, 406, 429, 849, 979
AluI AGCT 7 cut(s) 142, 169, 182, 406, 429, 849, 979
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 5 cut(s) 119, 234, 247, 473, 835
AlwNI CAGNNNCTG 1 cut(s) 935
Aor13HI TCCGGA 2 cut(s) 35, 236
AoxI GGCC 3 cut(s) 206, 302, 374
ApeKI GCWGC 3 cut(s) 182, 678, 941
ApoI RAATTY 2 cut(s) 351, 494
Asp700I GAANNNNTTC 1 cut(s) 813
AspLEI GCGC 3 cut(s) 74, 252, 471
AspS9I GGNCC 3 cut(s) 103, 154, 559
AsuHPI GGTGA 2 cut(s) 818, 920
AvaII GGWCC 3 cut(s) 103, 154, 559
BamHI GGATCC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 335
BbvI GCAGC 3 cut(s) 169, 665, 928
BccI CCATC 3 cut(s) 440, 455, 786
BceAI ACGGC 2 cut(s) 61, 666
BciT130I CCWGG 2 cut(s) 231, 247
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 2 cut(s) 258, 894
BfoI RGCGCY 1 cut(s) 253
BfuAI ACCTGC 1 cut(s) 65
BglII AGATCT 1 cut(s) 381
BisI GCNGC 5 cut(s) 183, 186, 679, 775, 942
BlsI GCNGC 5 cut(s) 184, 187, 680, 776, 943
Bme1390I CCNGG 2 cut(s) 231, 247
Bme18I GGWCC 3 cut(s) 103, 154, 559
BmgT120I GGNCC 3 cut(s) 103, 154, 559
BmiI GGNNCC 6 cut(s) 104, 235, 241, 276, 560, 702
BmrFI CCNGG 2 cut(s) 231, 247
BmrI ACTGGG 1 cut(s) 565
BmsI GCATC 2 cut(s) 669, 922
BmuI ACTGGG 1 cut(s) 565
BplI GAGNNNNNCTC 2 cut(s) 259, 291
BpmI CTGGAG 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 245, 562
BsaWI WCCGGW 3 cut(s) 35, 236, 481
BsaXI ACNNNNNCTCC 4 cut(s) 42, 72, 594, 624
Bsc4I CCNNNNNNNGG 3 cut(s) 230, 236, 488
Bse118I RCCGGY 1 cut(s) 204
Bse1I ACTGG 3 cut(s) 278, 560, 712
BseAI TCCGGA 2 cut(s) 35, 236
BseBI CCWGG 2 cut(s) 231, 247
BseDI CCNNGG 2 cut(s) 245, 562
BseGI GGATG 1 cut(s) 778
BseLI CCNNNNNNNGG 3 cut(s) 230, 236, 488
BseMII CTCAG 2 cut(s) 971, 989
BseNI ACTGG 3 cut(s) 278, 560, 712
BseRI GAGGAG 2 cut(s) 355, 407
BseXI GCAGC 3 cut(s) 169, 665, 928
BseYI CCCAGC 2 cut(s) 142, 429
BshFI GGCC 3 cut(s) 208, 304, 376
BsiSI CCGG 4 cut(s) 36, 205, 237, 482
BslFI GGGAC 2 cut(s) 116, 183
BslI CCNNNNNNNGG 3 cut(s) 230, 236, 488
BsmAI GTCTC 1 cut(s) 56
BsmFI GGGAC 2 cut(s) 116, 183
BsnI GGCC 3 cut(s) 208, 304, 376
Bsp1286I GDGCHC 1 cut(s) 335
Bsp13I TCCGGA 2 cut(s) 35, 236
Bsp143I GATC 5 cut(s) 111, 239, 381, 478, 827
BspACI CCGC 5 cut(s) 5, 24, 48, 186, 775
BspANI GGCC 3 cut(s) 208, 304, 376
BspCNI CTCAG 2 cut(s) 972, 990
BspEI TCCGGA 2 cut(s) 35, 236
BspLI GGNNCC 6 cut(s) 104, 235, 241, 276, 560, 702
BspMI ACCTGC 1 cut(s) 65
BspPI GGATC 5 cut(s) 119, 234, 247, 473, 835
BspQI GCTCTTC 2 cut(s) 259, 260
BsrFI RCCGGY 1 cut(s) 204
BsrI ACTGG 3 cut(s) 278, 560, 712
BssAI RCCGGY 1 cut(s) 204
BssECI CCNNGG 2 cut(s) 245, 562
BssMI GATC 5 cut(s) 111, 239, 381, 478, 827
BssT1I CCWWGG 1 cut(s) 562
Bst2UI CCWGG 2 cut(s) 231, 247
Bst4CI ACNGT 3 cut(s) 58, 540, 962
Bst6I CTCTTC 4 cut(s) 259, 260, 293, 804
BstAPI GCANNNNNTGC 1 cut(s) 678
BstC8I GCNNGC 3 cut(s) 512, 622, 899
BstDEI CTNAG 3 cut(s) 11, 980, 998
BstF5I GGATG 1 cut(s) 778
BstH2I RGCGCY 1 cut(s) 253
BstHHI GCGC 3 cut(s) 74, 252, 471
BstKTI GATC 5 cut(s) 114, 242, 384, 481, 830
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 5 cut(s) 111, 239, 381, 478, 827
BstMWI GCNNNNNNNGC 6 cut(s) 403, 426, 507, 678, 941, 950
BstNI CCWGG 2 cut(s) 231, 247
BstNSI RCATGY 2 cut(s) 645, 905
BstSCI CCNGG 2 cut(s) 229, 245
BstV1I GCAGC 3 cut(s) 169, 665, 928
BstX2I RGATCY 2 cut(s) 239, 381
BstYI RGATCY 2 cut(s) 239, 381
BsuRI GGCC 3 cut(s) 208, 304, 376
BtsCI GGATG 1 cut(s) 778
BtsI GCAGTG 1 cut(s) 886
BtsIMutI CAGTG 4 cut(s) 545, 705, 886, 967
BveI ACCTGC 1 cut(s) 65
Cac8I GCNNGC 3 cut(s) 512, 622, 899
CaiI CAGNNNCTG 1 cut(s) 935
CfoI GCGC 3 cut(s) 74, 252, 471
Cfr10I RCCGGY 1 cut(s) 204
Cfr13I GGNCC 3 cut(s) 103, 154, 559
Csp6I GTAC 2 cut(s) 88, 990
CviAII CATG 5 cut(s) 398, 592, 642, 857, 902
CviQI GTAC 2 cut(s) 88, 990
DdeI CTNAG 3 cut(s) 11, 980, 998
DpnI GATC 5 cut(s) 113, 241, 383, 480, 829
DpnII GATC 5 cut(s) 111, 239, 381, 478, 827
Eam1104I CTCTTC 4 cut(s) 259, 260, 293, 804
EarI CTCTTC 4 cut(s) 259, 260, 293, 804
EciI GGCGGA 2 cut(s) 39, 63
Eco130I CCWWGG 1 cut(s) 562
Eco147I AGGCCT 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 335
Eco47I GGWCC 3 cut(s) 103, 154, 559
Eco57I CTGAAG 4 cut(s) 66, 185, 822, 852
EcoRII CCWGG 2 cut(s) 229, 245
EcoT14I CCWWGG 1 cut(s) 562
EcoT38I GRGCYC 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 562
FaeI CATG 5 cut(s) 401, 595, 645, 860, 905
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FaqI GGGAC 2 cut(s) 116, 183
FatI CATG 5 cut(s) 397, 591, 641, 856, 901
Fnu4HI GCNGC 5 cut(s) 183, 186, 679, 775, 942
FokI GGATG 1 cut(s) 765
FriOI GRGCYC 1 cut(s) 335
Fsp4HI GCNGC 5 cut(s) 183, 186, 679, 775, 942
FspBI CTAG 2 cut(s) 258, 894
GlaI GCGC 3 cut(s) 73, 251, 470
GluI GCNGC 5 cut(s) 183, 186, 679, 775, 942
GsaI CCCAGC 2 cut(s) 146, 433
GsuI CTGGAG 1 cut(s) 261
HaeII RGCGCY 1 cut(s) 253
HaeIII GGCC 3 cut(s) 208, 304, 376
HapII CCGG 4 cut(s) 36, 205, 237, 482
HhaI GCGC 3 cut(s) 74, 252, 471
Hin1II CATG 5 cut(s) 401, 595, 645, 860, 905
Hin6I GCGC 3 cut(s) 72, 250, 469
HinP1I GCGC 3 cut(s) 72, 250, 469
HincII GTYRAC 1 cut(s) 958
HindII GTYRAC 1 cut(s) 958
HinfI GANTC 1 cut(s) 863
HpaI GTTAAC 1 cut(s) 958
HpaII CCGG 4 cut(s) 36, 205, 237, 482
HphI GGTGA 2 cut(s) 818, 920
Hpy166II GTNNAC 1 cut(s) 958
Hpy188I TCNGA 3 cut(s) 12, 116, 889
Hpy188III TCNNGA 5 cut(s) 36, 172, 237, 632, 870
Hpy8I GTNNAC 1 cut(s) 958
HpyAV CCTTC 4 cut(s) 359, 685, 846, 978
HpyCH4III ACNGT 3 cut(s) 58, 540, 962
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 6 cut(s) 136, 292, 510, 672, 821, 929
HpyF10VI GCNNNNNNNGC 6 cut(s) 403, 426, 507, 678, 941, 950
HpyF3I CTNAG 3 cut(s) 11, 980, 998
HpySE526I ACGT 1 cut(s) 196
Hsp92II CATG 5 cut(s) 401, 595, 645, 860, 905
HspAI GCGC 3 cut(s) 72, 250, 469
Kpn2I TCCGGA 2 cut(s) 35, 236
KspAI GTTAAC 1 cut(s) 958
Kzo9I GATC 5 cut(s) 111, 239, 381, 478, 827
LguI GCTCTTC 2 cut(s) 259, 260
LmnI GCTCC 3 cut(s) 50, 280, 394
Lsp1109I GCAGC 3 cut(s) 169, 665, 928
LweI GCATC 2 cut(s) 669, 922
MaeI CTAG 2 cut(s) 258, 894
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 4 cut(s) 551, 665, 740, 908
MalI GATC 5 cut(s) 113, 241, 383, 480, 829
MboI GATC 5 cut(s) 111, 239, 381, 478, 827
MboII GAAGA 7 cut(s) 246, 277, 310, 322, 470, 821, 858
MfeI CAATTG 1 cut(s) 673
MflI RGATCY 2 cut(s) 239, 381
MhlI GDGCHC 1 cut(s) 335
MluCI AATT 6 cut(s) 351, 494, 673, 734, 873, 1006
MroI TCCGGA 2 cut(s) 35, 236
MroXI GAANNNNTTC 1 cut(s) 813
MseI TTAA 3 cut(s) 486, 957, 1009
MslI CAYNNNNRTG 1 cut(s) 906
MspI CCGG 4 cut(s) 36, 205, 237, 482
MspR9I CCNGG 2 cut(s) 231, 247
MunI CAATTG 1 cut(s) 673
MvaI CCWGG 2 cut(s) 231, 247
MwoI GCNNNNNNNGC 6 cut(s) 403, 426, 507, 678, 941, 950
NdeII GATC 5 cut(s) 111, 239, 381, 478, 827
NlaIII CATG 5 cut(s) 401, 595, 645, 860, 905
NlaIV GGNNCC 6 cut(s) 104, 235, 241, 276, 560, 702
NmuCI GTSAC 2 cut(s) 551, 908
NspI RCATGY 2 cut(s) 645, 905
PaqCI CACCTGC 1 cut(s) 65
PceI AGGCCT 1 cut(s) 304
PciI ACATGT 1 cut(s) 641
PciSI GCTCTTC 2 cut(s) 259, 260
PdmI GAANNNNTTC 1 cut(s) 813
PfeI GAWTC 1 cut(s) 863
PflFI GACNNNGTC 1 cut(s) 557
PflMI CCANNNNNTGG 1 cut(s) 230
PkrI GCNGC 5 cut(s) 184, 187, 680, 776, 943
PscI ACATGT 1 cut(s) 641
PsiI TTATAA 1 cut(s) 359
Psp6I CCWGG 2 cut(s) 229, 245
PspFI CCCAGC 2 cut(s) 142, 429
PspGI CCWGG 2 cut(s) 229, 245
PspN4I GGNNCC 6 cut(s) 104, 235, 241, 276, 560, 702
PspPI GGNCC 3 cut(s) 103, 154, 559
PsrI GAACNNNNNNTAC 2 cut(s) 80, 112
PstNI CAGNNNCTG 1 cut(s) 935
PsuI RGATCY 2 cut(s) 239, 381
PsyI GACNNNGTC 1 cut(s) 557
RsaI GTAC 2 cut(s) 89, 991
RsaNI GTAC 2 cut(s) 88, 990
RseI CAYNNNNRTG 1 cut(s) 906
SapI GCTCTTC 2 cut(s) 259, 260
SaqAI TTAA 3 cut(s) 486, 957, 1009
SatI GCNGC 5 cut(s) 183, 186, 679, 775, 942
Sau3AI GATC 5 cut(s) 111, 239, 381, 478, 827
Sau96I GGNCC 3 cut(s) 103, 154, 559
ScrFI CCNGG 2 cut(s) 231, 247
SduI GDGCHC 1 cut(s) 335
SfaNI GCATC 2 cut(s) 669, 922
SinI GGWCC 3 cut(s) 103, 154, 559
SmiMI CAYNNNNRTG 1 cut(s) 906
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 6 cut(s) 351, 494, 673, 734, 873, 1006
SseBI AGGCCT 1 cut(s) 304
SsiI CCGC 5 cut(s) 5, 24, 48, 186, 775
SspMI CTAG 2 cut(s) 258, 894
StuI AGGCCT 1 cut(s) 304
StyD4I CCNGG 2 cut(s) 229, 245
StyI CCWWGG 1 cut(s) 562
TaaI ACNGT 3 cut(s) 58, 540, 962
TaiI ACGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 19
TaqII GACCGA 1 cut(s) 191
TasI AATT 6 cut(s) 351, 494, 673, 734, 873, 1006
TatI WGTACW 1 cut(s) 989
TauI GCSGC 2 cut(s) 188, 777
TfiI GAWTC 1 cut(s) 863
Tru1I TTAA 3 cut(s) 486, 957, 1009
Tru9I TTAA 3 cut(s) 486, 957, 1009
TscAI CASTG 4 cut(s) 545, 712, 886, 967
TseFI GTSAC 2 cut(s) 551, 908
TseI GCWGC 3 cut(s) 182, 678, 941
Tsp45I GTSAC 2 cut(s) 551, 908
TspDTI ATGAA 2 cut(s) 323, 876
TspRI CASTG 4 cut(s) 545, 712, 886, 967
Tth111I GACNNNGTC 1 cut(s) 557
Van91I CCANNNNNTGG 1 cut(s) 230
VpaK11BI GGWCC 3 cut(s) 103, 154, 559
XapI RAATTY 2 cut(s) 351, 494
XceI RCATGY 2 cut(s) 645, 905
XmnI GAANNNNTTC 1 cut(s) 813
XspI CTAG 2 cut(s) 258, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.