Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001920

Physical Location & Seq

Genomic Coordinates Forward (+)

15767914 .. 15770979

Gene Structure 3066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG100800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGTGAGCCGAAGAACCCGAGGTCCCAAACCGGCCGCCGAAGGCGACGAAGAAACCGGAAGGGGAGACAACGCAGCCGCAGAGGTTTCGGACTACGAGCAAATCAGAGACCAACGGATCAAAGAGAACAAGGAGCGAATGCAGAAGCTGGGCATTTTCGACCTTTCACTCCAGCTCAAGTCCAAACCCTCCGCCGCTTCAAAACGCGGCCGTCCGTTGAAAGACCCTTCCGATCAGACCAAAATCATAACCAAAACCTCTCTCTCCCCGGCAAGGCGTTCCTCTAGGTTGAAGACTCTGGCTCCGGTGAGTTATGTGGAGATTAGGCCCAAAGGGAAGAAGGAGTCTTCATGGAATGGTGAGATTAACATCAAGGAGGGTATAAGGCCGGAGATTTATACTGATGAACATGAAAAGCTGTTGGGGGATTGTAAGGAGACTTGGGAGCTCTCGGTTGATGGGTATGGAGAAGACAGGAAGCGGATATATGATCCGGTTAAGGGTGAAACTTGCCACCAATGCAGGCAGAAAACTCTTGGTCAGCATACACATTGCTGCAAATGTGACTTGGTCCAAGGGCAGTTTTGCGGAGATTGCTTATACATGAGATATGGAGAGAATGTGATCGAAGCCAACAAAAATCCTGATTGGGTTTGCCCTGTTTGTCGGGGCATTTGCAACTGCAGTCTTTGCCGTAAAGAAAAAGGGTGGGAGCCCACTGGTAATCTGTATAGGAAGGTCATAAATCTGGGTTACAAGTCTGTGGCACATTATCTTATTCAAACCTGTCGTTCCCAACCAAAATCAGAAACCTCAGGTGCAGAGGAATCAATGCATGATGATATGAAACAAGAAACAGAAGAGGCACACTTAACAGGGGGAGAAGAAATGGAAGAGGTTCAGTGTGTTGATGCCAAAGATTTGGGTAACATAGATGATACTGGTGCTGCCGCTGCTGGGGATTCAGTTGAAGGTGAGACAAAGGGAAAGCCGAGAAGGAGGAGCACAAGGTTGAGGAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-4CXXC_R1

Protein Analysis

341

Amino Acids

38.37

Weight (kDa)

8.09

Isoelectric Point (pI)

45.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-4CXXC_R1	PF10497	163 - 259	4.2e-40	Zinc-finger domain of monoamine-oxidase A repressor R1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37110 AT4G37110 AT4G37110 AT4G37110
fragaria_vesca	FvH4_1g14770 FvH4_1g14770 FvH4_1g14770 FvH4_2g07200 FvH4_2g07200
malus_domestica	MD02G1160900.v1.1 MD05G1072600.v1.1 MD10G1087200.v1.1 MD10G1087400.v1.1 MD15G1275000.v1.1
prunus_persica	Prupe.7G142700_v2.0.a1 Prupe.7G142700_v2.0.a1 Prupe.8G113300_v2.0.a1 Prupe.8G113300_v2.0.a1 Prupe.8G113400_v2.0.a1 Prupe.8G113400_v2.0.a1
pyrus_communis	pycom02g12700 pycom05g06480 pycom10g06970 pycom10g08140 pycom15g23810
rosa_chinensis	RchiOBHm_Chr2g0103711 RchiOBHm_Chr6g0259631 RchiOBHm_Chr6g0259651
rosa_laevigata	RLG00000014516 RLG00000017251
rosa_multiflora	Rmu_sc0000536.1_g000015
rosa_roxburghii	Rroxscaffold_2G00139460 Rroxscaffold_7G00206930
rosa_rugosa	Rorug02G0116800 Rorug05G0590100
rosa_samantha	Rh2AG165600 Rh2BG172900 Rh2CG171600 Rh2DG171200 Rh6AG106300 Rh6BG100800 Rh6BG100900 Rh6CG095400 Rh6DG089300
rosa_wichuraiana	Rw2G012970 Rw6G009190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	207
AciI	CCGC	8 cut(s)	36, 78, 192, 195, 207, 481, 588, 951
AclWI	GGATC	2 cut(s)	125, 485
AcoI	YGGCCR	2 cut(s)	33, 208
AfiI	CCNNNNNNNGG	3 cut(s)	273, 500, 957
AgsI	TTSAA	5 cut(s)	201, 220, 292, 782, 971
AloI	GAACNNNNNNTCC	2 cut(s)	7, 39
AluBI	AGCT	4 cut(s)	148, 175, 418, 448
AluI	AGCT	4 cut(s)	148, 175, 418, 448
Alw21I	GWGCWC	2 cut(s)	450, 1007
Alw26I	GTCTC	4 cut(s)	60, 102, 431, 971
AlwI	GGATC	2 cut(s)	125, 485
AlwNI	CAGNNNCTG	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	18
AoxI	GGCC	4 cut(s)	33, 208, 326, 386
ApeKI	GCWGC	4 cut(s)	74, 555, 947, 953
Asp700I	GAANNNNTTC	1 cut(s)	897
AspS9I	GGNCC	3 cut(s)	23, 327, 571
AsuC2I	CCSGG	1 cut(s)	269
AsuHPI	GGTGA	5 cut(s)	16, 319, 371, 515, 986
AvaI	CYCGRG	1 cut(s)	18
AvaII	GGWCC	2 cut(s)	23, 571
AxyI	CCTNAGG	1 cut(s)	814
BanII	GRGCYC	2 cut(s)	450, 717
BbsI	GAAGAC	3 cut(s)	299, 339, 477
Bbv12I	GWGCWC	2 cut(s)	450, 1007
BbvI	GCAGC	4 cut(s)	86, 542, 934, 940
BccI	CCATC	1 cut(s)	452
BceAI	ACGGC	2 cut(s)	195, 678
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BcnI	CCSGG	1 cut(s)	269
BcoDI	GTCTC	4 cut(s)	60, 102, 431, 971
BfaI	CTAG	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	682
BisI	GCNGC	9 cut(s)	36, 75, 78, 195, 208, 556, 948, 951, 954
BlsI	GCNGC	9 cut(s)	37, 76, 79, 196, 209, 557, 949, 952, 955
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	2 cut(s)	23, 571
BmeT110I	CYCGRG	1 cut(s)	18
BmgT120I	GGNCC	3 cut(s)	23, 327, 571
BmiI	GGNNCC	3 cut(s)	25, 303, 714
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	1 cut(s)	901
BpiI	GAAGAC	3 cut(s)	299, 339, 477
BpmI	CTGGAG	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	269
BsaBI	GATNNNNATC	1 cut(s)	368
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	3 cut(s)	19, 267, 574
BsaWI	WCCGGW	3 cut(s)	56, 304, 493
BsaXI	ACNNNNNCTCC	4 cut(s)	286, 316, 606, 636
Bsc4I	CCNNNNNNNGG	3 cut(s)	273, 500, 957
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	724, 946
Bse21I	CCTNAGG	1 cut(s)	814
Bse3DI	GCAATG	1 cut(s)	550
Bse8I	GATNNNNATC	1 cut(s)	368
BseDI	CCNNGG	3 cut(s)	19, 267, 574
BseJI	GATNNNNATC	1 cut(s)	368
BseLI	CCNNNNNNNGG	3 cut(s)	273, 500, 957
BseMI	GCAATG	1 cut(s)	550
BseMII	CTCAG	1 cut(s)	828
BseNI	ACTGG	2 cut(s)	724, 946
BseRI	GAGGAG	1 cut(s)	1015
BseX3I	CGGCCG	2 cut(s)	33, 208
BseXI	GCAGC	4 cut(s)	86, 542, 934, 940
BseYI	CCCAGC	2 cut(s)	148, 956
BsgI	GTGCAG	1 cut(s)	840
Bsh1236I	CGCG	1 cut(s)	207
Bsh1285I	CGRYCG	2 cut(s)	36, 211
BshFI	GGCC	4 cut(s)	35, 210, 328, 388
BsiEI	CGRYCG	2 cut(s)	36, 211
BsiHKAI	GWGCWC	2 cut(s)	450, 1007
BsiHKCI	CYCGRG	1 cut(s)	18
BsiSI	CCGG	6 cut(s)	32, 57, 269, 305, 389, 494
BslFI	GGGAC	1 cut(s)	9
BslI	CCNNNNNNNGG	3 cut(s)	273, 500, 957
BsmAI	GTCTC	4 cut(s)	60, 102, 431, 971
BsmFI	GGGAC	1 cut(s)	9
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	4 cut(s)	35, 210, 328, 388
Bso31I	GGTCTC	1 cut(s)	102
BsoBI	CYCGRG	1 cut(s)	18
Bsp1286I	GDGCHC	3 cut(s)	450, 717, 1007
Bsp143I	GATC	4 cut(s)	117, 232, 490, 624
BspACI	CCGC	8 cut(s)	36, 78, 192, 195, 207, 481, 588, 951
BspANI	GGCC	4 cut(s)	35, 210, 328, 388
BspCNI	CTCAG	1 cut(s)	827
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	3 cut(s)	25, 303, 714
BspMAI	CTGCAG	1 cut(s)	686
BspPI	GGATC	2 cut(s)	125, 485
BspTNI	GGTCTC	1 cut(s)	102
BsrDI	GCAATG	1 cut(s)	550
BsrFI	RCCGGY	1 cut(s)	31
BsrI	ACTGG	2 cut(s)	724, 946
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	3 cut(s)	19, 267, 574
BssMI	GATC	4 cut(s)	117, 232, 490, 624
BssT1I	CCWWGG	1 cut(s)	574
Bst6I	CTCTTC	2 cut(s)	855, 888
BstAPI	GCANNNNNTGC	1 cut(s)	690
BstC8I	GCNNGC	1 cut(s)	524
BstDEI	CTNAG	1 cut(s)	814
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	4 cut(s)	120, 235, 493, 627
BstMAI	GTCTC	4 cut(s)	60, 102, 431, 971
BstMBI	GATC	4 cut(s)	117, 232, 490, 624
BstMCI	CGRYCG	2 cut(s)	36, 211
BstMWI	GCNNNNNNNGC	4 cut(s)	519, 594, 690, 953
BstSCI	CCNGG	1 cut(s)	267
BstSFI	CTRYAG	1 cut(s)	682
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	4 cut(s)	86, 542, 934, 940
BstV2I	GAAGAC	3 cut(s)	299, 339, 477
BstXI	CCANNNNNNTGG	1 cut(s)	922
BstZI	CGGCCG	2 cut(s)	33, 208
Bsu36I	CCTNAGG	1 cut(s)	814
BsuRI	GGCC	4 cut(s)	35, 210, 328, 388
BtsIMutI	CAGTG	2 cut(s)	717, 908
Cac8I	GCNNGC	1 cut(s)	524
CaiI	CAGNNNCTG	1 cut(s)	148
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	3 cut(s)	23, 327, 571
CviAII	CATG	4 cut(s)	351, 410, 604, 836
DdeI	CTNAG	1 cut(s)	814
DpnI	GATC	4 cut(s)	119, 234, 492, 626
DpnII	GATC	4 cut(s)	117, 232, 490, 624
EaeI	YGGCCR	2 cut(s)	33, 208
EagI	CGGCCG	2 cut(s)	33, 208
Eam1104I	CTCTTC	2 cut(s)	855, 888
EarI	CTCTTC	2 cut(s)	855, 888
EciI	GGCGGA	1 cut(s)	181
Ecl136II	GAGCTC	1 cut(s)	448
EclXI	CGGCCG	2 cut(s)	33, 208
Eco130I	CCWWGG	1 cut(s)	574
Eco24I	GRGCYC	2 cut(s)	450, 717
Eco31I	GGTCTC	1 cut(s)	102
Eco47I	GGWCC	2 cut(s)	23, 571
Eco52I	CGGCCG	2 cut(s)	33, 208
Eco53kI	GAGCTC	1 cut(s)	448
Eco81I	CCTNAGG	1 cut(s)	814
Eco88I	CYCGRG	1 cut(s)	18
EcoICRI	GAGCTC	1 cut(s)	448
EcoO109I	RGGNCCY	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	574
EcoT22I	ATGCAT	1 cut(s)	837
EcoT38I	GRGCYC	2 cut(s)	450, 717
ErhI	CCWWGG	1 cut(s)	574
FaeI	CATG	4 cut(s)	354, 413, 607, 839
FaqI	GGGAC	1 cut(s)	9
FatI	CATG	4 cut(s)	350, 409, 603, 835
Fnu4HI	GCNGC	9 cut(s)	36, 75, 78, 195, 208, 556, 948, 951, 954
FriOI	GRGCYC	2 cut(s)	450, 717
Fsp4HI	GCNGC	9 cut(s)	36, 75, 78, 195, 208, 556, 948, 951, 954
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	9 cut(s)	36, 75, 78, 195, 208, 556, 948, 951, 954
GsaI	CCCAGC	2 cut(s)	152, 960
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	4 cut(s)	35, 210, 328, 388
HapII	CCGG	6 cut(s)	32, 57, 269, 305, 389, 494
Hin1II	CATG	4 cut(s)	354, 413, 607, 839
HinfI	GANTC	4 cut(s)	295, 344, 827, 962
HpaII	CCGG	6 cut(s)	32, 57, 269, 305, 389, 494
HphI	GGTGA	5 cut(s)	16, 319, 371, 515, 986
Hpy188I	TCNGA	5 cut(s)	91, 107, 232, 237, 808
Hpy188III	TCNNGA	1 cut(s)	644
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	7 cut(s)	35, 54, 237, 334, 730, 965, 990
HpyCH4V	TGCA	7 cut(s)	142, 522, 558, 678, 684, 821, 835
HpyF10VI	GCNNNNNNNGC	4 cut(s)	519, 594, 690, 953
HpyF3I	CTNAG	1 cut(s)	814
Hsp92II	CATG	4 cut(s)	354, 413, 607, 839
Kzo9I	GATC	4 cut(s)	117, 232, 490, 624
LmnI	GCTCC	5 cut(s)	133, 307, 445, 712, 1002
Lsp1109I	GCAGC	4 cut(s)	86, 542, 934, 940
LweI	GCATC	1 cut(s)	901
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	3 cut(s)	563, 752, 926
MalI	GATC	4 cut(s)	119, 234, 492, 626
MboI	GATC	4 cut(s)	117, 232, 490, 624
MboII	GAAGA	9 cut(s)	24, 62, 304, 339, 349, 482, 872, 896, 905
MhlI	GDGCHC	3 cut(s)	450, 717, 1007
MlyI	GAGTC	2 cut(s)	289, 353
Mph1103I	ATGCAT	1 cut(s)	837
MroXI	GAANNNNTTC	1 cut(s)	897
MseI	TTAA	3 cut(s)	366, 498, 872
MspA1I	CMGCKG	1 cut(s)	953
MspI	CCGG	6 cut(s)	32, 57, 269, 305, 389, 494
MspR9I	CCNGG	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	144
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	4 cut(s)	519, 594, 690, 953
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	4 cut(s)	117, 232, 490, 624
NlaIII	CATG	4 cut(s)	354, 413, 607, 839
NlaIV	GGNNCC	3 cut(s)	25, 303, 714
NmeAIII	GCCGAG	1 cut(s)	1017
NmuCI	GTSAC	1 cut(s)	563
NsiI	ATGCAT	1 cut(s)	837
PctI	GAATGC	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	897
PfeI	GAWTC	2 cut(s)	827, 962
PflFI	GACNNNGTC	1 cut(s)	569
PkrI	GCNGC	9 cut(s)	37, 76, 79, 196, 209, 557, 949, 952, 955
PleI	GAGTC	2 cut(s)	289, 352
PpsI	GAGTC	2 cut(s)	289, 352
PpuMI	RGGWCCY	1 cut(s)	23
Psp124BI	GAGCTC	1 cut(s)	450
Psp5II	RGGWCCY	1 cut(s)	23
PspFI	CCCAGC	2 cut(s)	148, 956
PspN4I	GGNNCC	3 cut(s)	25, 303, 714
PspPI	GGNCC	3 cut(s)	23, 327, 571
PspPPI	RGGWCCY	1 cut(s)	23
PstI	CTGCAG	1 cut(s)	686
PstNI	CAGNNNCTG	1 cut(s)	148
PsyI	GACNNNGTC	1 cut(s)	569
SacI	GAGCTC	1 cut(s)	450
SaqAI	TTAA	3 cut(s)	366, 498, 872
SatI	GCNGC	9 cut(s)	36, 75, 78, 195, 208, 556, 948, 951, 954
Sau3AI	GATC	4 cut(s)	117, 232, 490, 624
Sau96I	GGNCC	3 cut(s)	23, 327, 571
SchI	GAGTC	2 cut(s)	289, 353
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	3 cut(s)	450, 717, 1007
SfaNI	GCATC	1 cut(s)	901
SfcI	CTRYAG	1 cut(s)	682
SinI	GGWCC	2 cut(s)	23, 571
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SsiI	CCGC	8 cut(s)	36, 78, 192, 195, 207, 481, 588, 951
SspMI	CTAG	1 cut(s)	285
SstI	GAGCTC	1 cut(s)	450
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	574
TaqI	TCGA	2 cut(s)	159, 627
TauI	GCSGC	5 cut(s)	38, 80, 197, 210, 953
TfiI	GAWTC	2 cut(s)	827, 962
Tru1I	TTAA	3 cut(s)	366, 498, 872
Tru9I	TTAA	3 cut(s)	366, 498, 872
TscAI	CASTG	2 cut(s)	724, 908
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	4 cut(s)	74, 555, 947, 953
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	4 cut(s)	339, 420, 426, 860
TspGWI	ACGGA	2 cut(s)	130, 204
TspRI	CASTG	2 cut(s)	724, 908
Tth111I	GACNNNGTC	1 cut(s)	569
VpaK11BI	GGWCC	2 cut(s)	23, 571
XmnI	GAANNNNTTC	1 cut(s)	897
XspI	CTAG	1 cut(s)	285
Zsp2I	ATGCAT	1 cut(s)	837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.