Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001920

Physical Location & Seq

Genomic Coordinates Forward (+)

15638460 .. 15641622

Gene Structure 3163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG106300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGTGAGCCGAAGAACCCAAGGTCCCAAACCCGCCGCCAACGGCGACGATGCAACCGGAATCGGAGACAACGCAGCCGCAGAGGTTTCGGACTACGAGCAAATCAGAGACCAACGGATCAAAGAGAACAAGGAGCGAATGCAGAAGCTGGGCATTTTCGACCTTTCACTCCAGCTCAAGTCCAAACCCTCCGCCGCTTCAAAACGCGGCCGTCCGTTGAAGGACCCTTCCGATCAGACCAAAATCATAACCAAAACCTCTCTCTCCCCAGCAAGGCGTTCCTCTAGGTTGAAGACTCTGGCTCCGGTGAGTTATGTGGAGATTAGGCCCAAAGGGAAGAGGGAGTCTTCGTGGAATGGTGAGATTAATATCAAGGAGGGTATAAGGCCGGAGATTTATACTGATGAACATGAAAAGCTGTTGGGGGATTGTAAGGAGACTTGGGAGCTCTCGGTTGATGGGTATGGAGAAGACAGGAAGCGGATATATGATCCGGTTAAGGGTGAAACTTGCCACCAATGCAGGCAGAAAACTCTTGGTCAGCATACACATTGCTGCAAATGTGACTTGGTCCAAGGGCAGTTTTGCGGAGATTGCTTATACATGAGATATGGAGAGAATGTGATCGAAGCCAACAAAAATCCTGATTGGGTTTGCCCTGTTTGTCGGGGCATTTGCAACTGCAGTCTTTGCCGTAAAGAAAAAGGGTGGGAGCCCACTGGTAATCTGTATAGGAAGGTCATAAATCTGGGTTTCAAGTCTGTGGCACATTATCTTATTCAAACCCGTCGTTCCCAACCAAAATCAGAAACCTCAGGTGCAGAGGAATCAATGCATGATGATATGAAACAAGAAACAGAAGAGGCACACTTAACAGGGGGAGAAGAAATGGAAGAGGTTCAGTGTGTTGATGCCAAAGATTTGGGTAACATGGATGATACTGGTGCTGCCGTTGCTGGGGATTCAGTTGAAGGTGAGACAAAGGGAAAGCTGAGAAGGAGGAGCACAAGGTTGAGGAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-4CXXC_R1

Protein Analysis

341

Amino Acids

38.34

Weight (kDa)

8.3

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-4CXXC_R1	PF10497	163 - 259	4.2e-40	Zinc-finger domain of monoamine-oxidase A repressor R1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37110 AT4G37110 AT4G37110 AT4G37110
fragaria_vesca	FvH4_1g14770 FvH4_1g14770 FvH4_1g14770 FvH4_2g07200 FvH4_2g07200
malus_domestica	MD02G1160900.v1.1 MD05G1072600.v1.1 MD10G1087200.v1.1 MD10G1087400.v1.1 MD15G1275000.v1.1
prunus_persica	Prupe.7G142700_v2.0.a1 Prupe.7G142700_v2.0.a1 Prupe.8G113300_v2.0.a1 Prupe.8G113300_v2.0.a1 Prupe.8G113400_v2.0.a1 Prupe.8G113400_v2.0.a1
pyrus_communis	pycom02g12700 pycom05g06480 pycom10g06970 pycom10g08140 pycom15g23810
rosa_chinensis	RchiOBHm_Chr2g0103711 RchiOBHm_Chr6g0259631 RchiOBHm_Chr6g0259651
rosa_laevigata	RLG00000014516 RLG00000017251
rosa_multiflora	Rmu_sc0000536.1_g000015
rosa_roxburghii	Rroxscaffold_2G00139460 Rroxscaffold_7G00206930
rosa_rugosa	Rorug02G0116800 Rorug05G0590100
rosa_samantha	Rh2AG165600 Rh2BG172900 Rh2CG171600 Rh2DG171200 Rh6AG106300 Rh6BG100800 Rh6BG100900 Rh6CG095400 Rh6DG089300
rosa_wichuraiana	Rw2G012970 Rw6G009190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	207
AciI	CCGC	8 cut(s)	33, 36, 78, 192, 195, 207, 481, 588
AclWI	GGATC	2 cut(s)	125, 485
AcoI	YGGCCR	1 cut(s)	208
AfiI	CCNNNNNNNGG	3 cut(s)	273, 500, 957
AgsI	TTSAA	6 cut(s)	201, 220, 292, 757, 782, 971
AloI	GAACNNNNNNTCC	2 cut(s)	7, 39
AluBI	AGCT	5 cut(s)	148, 175, 418, 448, 991
AluI	AGCT	5 cut(s)	148, 175, 418, 448, 991
Alw21I	GWGCWC	2 cut(s)	450, 1007
Alw26I	GTCTC	4 cut(s)	60, 102, 431, 971
AlwI	GGATC	2 cut(s)	125, 485
AlwNI	CAGNNNCTG	1 cut(s)	148
AoxI	GGCC	3 cut(s)	208, 326, 386
ApeKI	GCWGC	3 cut(s)	74, 555, 947
AseI	ATTAAT	1 cut(s)	366
Asp700I	GAANNNNTTC	1 cut(s)	897
AspS9I	GGNCC	4 cut(s)	23, 223, 327, 571
AsuHPI	GGTGA	5 cut(s)	16, 319, 371, 515, 986
AvaII	GGWCC	3 cut(s)	23, 223, 571
AxyI	CCTNAGG	1 cut(s)	814
BanII	GRGCYC	2 cut(s)	450, 717
BbsI	GAAGAC	3 cut(s)	299, 339, 477
Bbv12I	GWGCWC	2 cut(s)	450, 1007
BbvI	GCAGC	3 cut(s)	86, 542, 934
BccI	CCATC	1 cut(s)	452
BceAI	ACGGC	4 cut(s)	58, 195, 678, 935
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BcoDI	GTCTC	4 cut(s)	60, 102, 431, 971
BfaI	CTAG	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	682
BisI	GCNGC	7 cut(s)	36, 75, 78, 195, 208, 556, 948
BlsI	GCNGC	7 cut(s)	37, 76, 79, 196, 209, 557, 949
Bme18I	GGWCC	3 cut(s)	23, 223, 571
BmgT120I	GGNCC	4 cut(s)	23, 223, 327, 571
BmiI	GGNNCC	4 cut(s)	25, 225, 303, 714
BmsI	GCATC	2 cut(s)	40, 901
BpiI	GAAGAC	3 cut(s)	299, 339, 477
BpmI	CTGGAG	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	368
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	19, 574
BsaWI	WCCGGW	3 cut(s)	56, 304, 493
BsaXI	ACNNNNNCTCC	6 cut(s)	286, 316, 335, 365, 606, 636
Bsc4I	CCNNNNNNNGG	3 cut(s)	273, 500, 957
Bse1I	ACTGG	2 cut(s)	724, 946
Bse21I	CCTNAGG	1 cut(s)	814
Bse3DI	GCAATG	1 cut(s)	550
Bse8I	GATNNNNATC	1 cut(s)	368
BseDI	CCNNGG	2 cut(s)	19, 574
BseGI	GGATG	1 cut(s)	940
BseJI	GATNNNNATC	1 cut(s)	368
BseLI	CCNNNNNNNGG	3 cut(s)	273, 500, 957
BseMI	GCAATG	1 cut(s)	550
BseMII	CTCAG	2 cut(s)	828, 983
BseNI	ACTGG	2 cut(s)	724, 946
BseRI	GAGGAG	1 cut(s)	1015
BseX3I	CGGCCG	1 cut(s)	208
BseXI	GCAGC	3 cut(s)	86, 542, 934
BseYI	CCCAGC	3 cut(s)	148, 268, 956
BsgI	GTGCAG	1 cut(s)	840
Bsh1236I	CGCG	1 cut(s)	207
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	3 cut(s)	210, 328, 388
BsiEI	CGRYCG	1 cut(s)	211
BsiHKAI	GWGCWC	2 cut(s)	450, 1007
BsiSI	CCGG	4 cut(s)	57, 305, 389, 494
BslFI	GGGAC	1 cut(s)	9
BslI	CCNNNNNNNGG	3 cut(s)	273, 500, 957
BsmAI	GTCTC	4 cut(s)	60, 102, 431, 971
BsmFI	GGGAC	1 cut(s)	9
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	3 cut(s)	210, 328, 388
Bso31I	GGTCTC	1 cut(s)	102
Bsp1286I	GDGCHC	3 cut(s)	450, 717, 1007
Bsp143I	GATC	4 cut(s)	117, 232, 490, 624
BspACI	CCGC	8 cut(s)	33, 36, 78, 192, 195, 207, 481, 588
BspANI	GGCC	3 cut(s)	210, 328, 388
BspCNI	CTCAG	2 cut(s)	827, 984
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	4 cut(s)	25, 225, 303, 714
BspMAI	CTGCAG	1 cut(s)	686
BspPI	GGATC	2 cut(s)	125, 485
BspTNI	GGTCTC	1 cut(s)	102
BsrDI	GCAATG	1 cut(s)	550
BsrI	ACTGG	2 cut(s)	724, 946
BssECI	CCNNGG	2 cut(s)	19, 574
BssMI	GATC	4 cut(s)	117, 232, 490, 624
BssT1I	CCWWGG	2 cut(s)	19, 574
Bst6I	CTCTTC	3 cut(s)	332, 855, 888
BstAPI	GCANNNNNTGC	1 cut(s)	690
BstC8I	GCNNGC	1 cut(s)	524
BstDEI	CTNAG	2 cut(s)	814, 992
BstF5I	GGATG	1 cut(s)	940
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	4 cut(s)	120, 235, 493, 627
BstMAI	GTCTC	4 cut(s)	60, 102, 431, 971
BstMBI	GATC	4 cut(s)	117, 232, 490, 624
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	4 cut(s)	519, 594, 690, 953
BstSFI	CTRYAG	1 cut(s)	682
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	3 cut(s)	86, 542, 934
BstV2I	GAAGAC	3 cut(s)	299, 339, 477
BstXI	CCANNNNNNTGG	1 cut(s)	922
BstZI	CGGCCG	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	814
BsuRI	GGCC	3 cut(s)	210, 328, 388
BtsCI	GGATG	1 cut(s)	940
BtsIMutI	CAGTG	2 cut(s)	717, 908
Cac8I	GCNNGC	1 cut(s)	524
CaiI	CAGNNNCTG	1 cut(s)	148
Cfr13I	GGNCC	4 cut(s)	23, 223, 327, 571
CviAII	CATG	4 cut(s)	410, 604, 836, 931
DdeI	CTNAG	2 cut(s)	814, 992
DpnI	GATC	4 cut(s)	119, 234, 492, 626
DpnII	GATC	4 cut(s)	117, 232, 490, 624
EaeI	YGGCCR	1 cut(s)	208
EagI	CGGCCG	1 cut(s)	208
Eam1104I	CTCTTC	3 cut(s)	332, 855, 888
EarI	CTCTTC	3 cut(s)	332, 855, 888
EciI	GGCGGA	1 cut(s)	181
Ecl136II	GAGCTC	1 cut(s)	448
EclXI	CGGCCG	1 cut(s)	208
Eco130I	CCWWGG	2 cut(s)	19, 574
Eco24I	GRGCYC	2 cut(s)	450, 717
Eco31I	GGTCTC	1 cut(s)	102
Eco47I	GGWCC	3 cut(s)	23, 223, 571
Eco52I	CGGCCG	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	448
Eco81I	CCTNAGG	1 cut(s)	814
EcoICRI	GAGCTC	1 cut(s)	448
EcoO109I	RGGNCCY	2 cut(s)	23, 223
EcoT14I	CCWWGG	2 cut(s)	19, 574
EcoT22I	ATGCAT	1 cut(s)	837
EcoT38I	GRGCYC	2 cut(s)	450, 717
ErhI	CCWWGG	2 cut(s)	19, 574
FaeI	CATG	4 cut(s)	413, 607, 839, 934
FaqI	GGGAC	1 cut(s)	9
FatI	CATG	4 cut(s)	409, 603, 835, 930
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	7 cut(s)	36, 75, 78, 195, 208, 556, 948
FokI	GGATG	1 cut(s)	947
FriOI	GRGCYC	2 cut(s)	450, 717
Fsp4HI	GCNGC	7 cut(s)	36, 75, 78, 195, 208, 556, 948
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	7 cut(s)	36, 75, 78, 195, 208, 556, 948
GsaI	CCCAGC	3 cut(s)	152, 272, 960
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	3 cut(s)	210, 328, 388
HapII	CCGG	4 cut(s)	57, 305, 389, 494
Hin1II	CATG	4 cut(s)	413, 607, 839, 934
HinfI	GANTC	5 cut(s)	60, 295, 344, 827, 962
HpaII	CCGG	4 cut(s)	57, 305, 389, 494
HphI	GGTGA	5 cut(s)	16, 319, 371, 515, 986
Hpy188I	TCNGA	6 cut(s)	65, 91, 107, 232, 237, 808
Hpy188III	TCNNGA	1 cut(s)	644
Hpy99I	CGWCG	2 cut(s)	50, 792
HpyAV	CCTTC	5 cut(s)	214, 237, 730, 965, 990
HpyCH4V	TGCA	8 cut(s)	53, 142, 522, 558, 678, 684, 821, 835
HpyF10VI	GCNNNNNNNGC	4 cut(s)	519, 594, 690, 953
HpyF3I	CTNAG	2 cut(s)	814, 992
Hsp92II	CATG	4 cut(s)	413, 607, 839, 934
Kzo9I	GATC	4 cut(s)	117, 232, 490, 624
LmnI	GCTCC	5 cut(s)	133, 307, 445, 712, 1002
Lsp1109I	GCAGC	3 cut(s)	86, 542, 934
LweI	GCATC	2 cut(s)	40, 901
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	2 cut(s)	563, 926
MalI	GATC	4 cut(s)	119, 234, 492, 626
MboI	GATC	4 cut(s)	117, 232, 490, 624
MboII	GAAGA	8 cut(s)	24, 304, 339, 349, 482, 872, 896, 905
MhlI	GDGCHC	3 cut(s)	450, 717, 1007
MlyI	GAGTC	2 cut(s)	289, 353
Mph1103I	ATGCAT	1 cut(s)	837
MroXI	GAANNNNTTC	1 cut(s)	897
MseI	TTAA	3 cut(s)	366, 498, 872
MspI	CCGG	4 cut(s)	57, 305, 389, 494
Mva1269I	GAATGC	1 cut(s)	144
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	4 cut(s)	519, 594, 690, 953
NdeII	GATC	4 cut(s)	117, 232, 490, 624
NlaIII	CATG	4 cut(s)	413, 607, 839, 934
NlaIV	GGNNCC	4 cut(s)	25, 225, 303, 714
NmuCI	GTSAC	1 cut(s)	563
NsiI	ATGCAT	1 cut(s)	837
PctI	GAATGC	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	897
PfeI	GAWTC	3 cut(s)	60, 827, 962
PflFI	GACNNNGTC	1 cut(s)	569
PkrI	GCNGC	7 cut(s)	37, 76, 79, 196, 209, 557, 949
PleI	GAGTC	2 cut(s)	289, 352
PpsI	GAGTC	2 cut(s)	289, 352
PpuMI	RGGWCCY	2 cut(s)	23, 223
PshBI	ATTAAT	1 cut(s)	366
Psp124BI	GAGCTC	1 cut(s)	450
Psp5II	RGGWCCY	2 cut(s)	23, 223
PspFI	CCCAGC	3 cut(s)	148, 268, 956
PspN4I	GGNNCC	4 cut(s)	25, 225, 303, 714
PspPI	GGNCC	4 cut(s)	23, 223, 327, 571
PspPPI	RGGWCCY	2 cut(s)	23, 223
PstI	CTGCAG	1 cut(s)	686
PstNI	CAGNNNCTG	1 cut(s)	148
PsyI	GACNNNGTC	1 cut(s)	569
SacI	GAGCTC	1 cut(s)	450
SaqAI	TTAA	3 cut(s)	366, 498, 872
SatI	GCNGC	7 cut(s)	36, 75, 78, 195, 208, 556, 948
Sau3AI	GATC	4 cut(s)	117, 232, 490, 624
Sau96I	GGNCC	4 cut(s)	23, 223, 327, 571
SchI	GAGTC	2 cut(s)	289, 353
SduI	GDGCHC	3 cut(s)	450, 717, 1007
SfaNI	GCATC	2 cut(s)	40, 901
SfcI	CTRYAG	1 cut(s)	682
SinI	GGWCC	3 cut(s)	23, 223, 571
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SsiI	CCGC	8 cut(s)	33, 36, 78, 192, 195, 207, 481, 588
SspMI	CTAG	1 cut(s)	285
SstI	GAGCTC	1 cut(s)	450
StyI	CCWWGG	2 cut(s)	19, 574
TaqI	TCGA	2 cut(s)	159, 627
TauI	GCSGC	4 cut(s)	38, 80, 197, 210
TfiI	GAWTC	3 cut(s)	60, 827, 962
Tru1I	TTAA	3 cut(s)	366, 498, 872
Tru9I	TTAA	3 cut(s)	366, 498, 872
TscAI	CASTG	2 cut(s)	724, 908
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	3 cut(s)	74, 555, 947
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	3 cut(s)	420, 426, 860
TspGWI	ACGGA	2 cut(s)	130, 204
TspRI	CASTG	2 cut(s)	724, 908
Tth111I	GACNNNGTC	1 cut(s)	569
VpaK11BI	GGWCC	3 cut(s)	23, 223, 571
VspI	ATTAAT	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	897
XspI	CTAG	1 cut(s)	285
Zsp2I	ATGCAT	1 cut(s)	837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.