Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001920

Physical Location & Seq

Genomic Coordinates Reverse (-)

12940116 .. 12941000

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1087400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGTGGTTCGGAGAAATCGACGCGGAGGCGACTCCGAAGAGGGCAGCGGAGCAGCCGTAGAGAATGGAAGTGCGGGGGTTTCAGGGTACGAGCACTTCAGGGACCAAAAGATCAGAGAGAACAAGGAGAGATTGCAGAAGCTGGGAGTTTTGGACCTTGCCAAGAAGCTCAAGACCGAAACTGCCGCCCCAAAACGTCCCTACCGACCCAAAACCCACAACCCACTTCCTAATCCCGGGTCCCCCAGGCGCTCTTCCAGGTTGAAGAGTGTGGCTCCAGTAGATTATGTGGAAAAGACAAAAAACGAGAGCTCAAAGAGAAAGAGTGTTGAAATTTTTATAAAGGAAGGTTCAAAGCCTGAGATTTATACAGAGGAACATGAGAAGCTGTTGGGGGATTGTGTCGAAAGCTGGGAGCTAGGCGTTGATGGCTATGGTGAGGATCGGAAGCGCATTTACGATCCGGTTAATGGAGAAACTTGCCATCAATGCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-4CXXC_R1

Protein Analysis

166

Amino Acids

18.65

Weight (kDa)

9.2

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37110 AT4G37110 AT4G37110 AT4G37110
fragaria_vesca	FvH4_1g14770 FvH4_1g14770 FvH4_1g14770 FvH4_2g07200 FvH4_2g07200
malus_domestica	MD02G1160900.v1.1 MD05G1072600.v1.1 MD10G1087200.v1.1 MD10G1087400.v1.1 MD15G1275000.v1.1
prunus_persica	Prupe.7G142700_v2.0.a1 Prupe.7G142700_v2.0.a1 Prupe.8G113300_v2.0.a1 Prupe.8G113300_v2.0.a1 Prupe.8G113400_v2.0.a1 Prupe.8G113400_v2.0.a1
pyrus_communis	pycom02g12700 pycom05g06480 pycom10g06970 pycom10g08140 pycom15g23810
rosa_chinensis	RchiOBHm_Chr2g0103711 RchiOBHm_Chr6g0259631 RchiOBHm_Chr6g0259651
rosa_laevigata	RLG00000014516 RLG00000017251
rosa_multiflora	Rmu_sc0000536.1_g000015
rosa_roxburghii	Rroxscaffold_2G00139460 Rroxscaffold_7G00206930
rosa_rugosa	Rorug02G0116800 Rorug05G0590100
rosa_samantha	Rh2AG165600 Rh2BG172900 Rh2CG171600 Rh2DG171200 Rh6AG106300 Rh6BG100800 Rh6BG100900 Rh6CG095400 Rh6DG089300
rosa_wichuraiana	Rw2G012970 Rw6G009190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	483
AccII	CGCG	1 cut(s)	24
AciI	CCGC	4 cut(s)	24, 48, 74, 186
AclWI	GGATC	2 cut(s)	450, 455
AcsI	RAATTY	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	82
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	236, 470
AgsI	TTSAA	3 cut(s)	265, 332, 354
AjnI	CCWGG	2 cut(s)	245, 257
AluBI	AGCT	6 cut(s)	142, 169, 312, 388, 411, 418
AluI	AGCT	6 cut(s)	142, 169, 312, 388, 411, 418
Alw21I	GWGCWC	2 cut(s)	96, 314
AlwI	GGATC	2 cut(s)	450, 455
AlwNI	CAGNNNCTG	1 cut(s)	142
Ama87I	CYCGRG	1 cut(s)	236
ApeKI	GCWGC	2 cut(s)	45, 53
ApoI	RAATTY	1 cut(s)	333
AspLEI	GCGC	2 cut(s)	252, 453
AspS9I	GGNCC	3 cut(s)	103, 154, 240
AsuC2I	CCSGG	2 cut(s)	237, 238
AsuHPI	GGTGA	1 cut(s)	449
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	3 cut(s)	103, 154, 240
BanII	GRGCYC	1 cut(s)	314
BarI	GAAGNNNNNNTAC	4 cut(s)	80, 112, 440, 472
Bbv12I	GWGCWC	2 cut(s)	96, 314
BbvI	GCAGC	2 cut(s)	57, 65
BccI	CCATC	2 cut(s)	422, 492
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	2 cut(s)	247, 259
BcnI	CCSGG	2 cut(s)	237, 238
BfaI	CTAG	1 cut(s)	419
BfoI	RGCGCY	1 cut(s)	253
BfuAI	ACCTGC	1 cut(s)	483
BisI	GCNGC	3 cut(s)	46, 54, 186
BlsI	GCNGC	3 cut(s)	47, 55, 187
Bme1390I	CCNGG	4 cut(s)	237, 238, 247, 259
Bme18I	GGWCC	3 cut(s)	103, 154, 240
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	3 cut(s)	103, 154, 240
BmiI	GGNNCC	4 cut(s)	104, 241, 242, 276
BmrFI	CCNGG	4 cut(s)	237, 238, 247, 259
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
BpmI	CTGGAG	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	2 cut(s)	237, 238
BsaJI	CCNNGG	2 cut(s)	236, 245
BsaWI	WCCGGW	1 cut(s)	463
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 470
Bse1I	ACTGG	1 cut(s)	278
BseBI	CCWGG	2 cut(s)	247, 259
BseDI	CCNNGG	2 cut(s)	236, 245
BseLI	CCNNNNNNNGG	2 cut(s)	236, 470
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	57, 65
BseYI	CCCAGC	2 cut(s)	142, 411
Bsh1236I	CGCG	1 cut(s)	24
BsiHKAI	GWGCWC	2 cut(s)	96, 314
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	237, 464
BslFI	GGGAC	3 cut(s)	116, 183, 226
BslI	CCNNNNNNNGG	2 cut(s)	236, 470
BsmFI	GGGAC	3 cut(s)	116, 183, 226
BsoBI	CYCGRG	1 cut(s)	236
Bsp1286I	GDGCHC	2 cut(s)	96, 314
Bsp143I	GATC	3 cut(s)	111, 442, 460
BspACI	CCGC	4 cut(s)	24, 48, 74, 186
BspCNI	CTCAG	1 cut(s)	352
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	4 cut(s)	104, 241, 242, 276
BspMI	ACCTGC	1 cut(s)	483
BspPI	GGATC	2 cut(s)	450, 455
BspQI	GCTCTTC	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	236, 245
BssMI	GATC	3 cut(s)	111, 442, 460
Bst2UI	CCWGG	2 cut(s)	247, 259
Bst6I	CTCTTC	3 cut(s)	33, 259, 260
BstDEI	CTNAG	1 cut(s)	360
BstFNI	CGCG	1 cut(s)	24
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	2 cut(s)	252, 453
BstKTI	GATC	3 cut(s)	114, 445, 463
BstMBI	GATC	3 cut(s)	111, 442, 460
BstMWI	GCNNNNNNNGC	2 cut(s)	429, 489
BstNI	CCWGG	2 cut(s)	247, 259
BstSCI	CCNGG	4 cut(s)	235, 236, 245, 257
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	57, 65
BveI	ACCTGC	1 cut(s)	483
CaiI	CAGNNNCTG	1 cut(s)	142
CfoI	GCGC	2 cut(s)	252, 453
Cfr13I	GGNCC	3 cut(s)	103, 154, 240
Cfr9I	CCCGGG	1 cut(s)	236
CseI	GACGC	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	1 cut(s)	380
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	3 cut(s)	113, 444, 462
DpnII	GATC	3 cut(s)	111, 442, 460
Eam1104I	CTCTTC	3 cut(s)	33, 259, 260
EarI	CTCTTC	3 cut(s)	33, 259, 260
Ecl136II	GAGCTC	1 cut(s)	312
Eco24I	GRGCYC	1 cut(s)	314
Eco47I	GGWCC	3 cut(s)	103, 154, 240
Eco53kI	GAGCTC	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	312
EcoO109I	RGGNCCY	1 cut(s)	240
EcoRII	CCWGG	2 cut(s)	245, 257
EcoT38I	GRGCYC	1 cut(s)	314
FaeI	CATG	1 cut(s)	383
FaiI	YATR	5 cut(s)	288, 341, 369, 381, 435
FaqI	GGGAC	3 cut(s)	116, 183, 226
FatI	CATG	1 cut(s)	379
FauI	CCCGC	1 cut(s)	67
Fnu4HI	GCNGC	3 cut(s)	46, 54, 186
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	3 cut(s)	46, 54, 186
FspBI	CTAG	1 cut(s)	419
GlaI	GCGC	2 cut(s)	251, 452
GluI	GCNGC	3 cut(s)	46, 54, 186
GsaI	CCCAGC	2 cut(s)	146, 415
GsuI	CTGGAG	1 cut(s)	261
HaeII	RGCGCY	1 cut(s)	253
HapII	CCGG	2 cut(s)	237, 464
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	2 cut(s)	252, 453
Hin1II	CATG	1 cut(s)	383
Hin6I	GCGC	2 cut(s)	250, 451
HinP1I	GCGC	2 cut(s)	250, 451
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	2 cut(s)	237, 464
HphI	GGTGA	1 cut(s)	449
Hpy188I	TCNGA	4 cut(s)	12, 37, 116, 447
Hpy188III	TCNNGA	1 cut(s)	172
Hpy99I	CGWCG	1 cut(s)	24
HpyAV	CCTTC	1 cut(s)	341
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	2 cut(s)	136, 492
HpyF10VI	GCNNNNNNNGC	2 cut(s)	429, 489
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	1 cut(s)	383
HspAI	GCGC	2 cut(s)	250, 451
KflI	GGGWCCC	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	111, 442, 460
LguI	GCTCTTC	1 cut(s)	259
LmnI	GCTCC	3 cut(s)	50, 280, 415
Lsp1109I	GCAGC	2 cut(s)	57, 65
MaeI	CTAG	1 cut(s)	419
MaeII	ACGT	1 cut(s)	196
MalI	GATC	3 cut(s)	113, 444, 462
MboI	GATC	3 cut(s)	111, 442, 460
MboII	GAAGA	3 cut(s)	50, 246, 277
MhlI	GDGCHC	2 cut(s)	96, 314
MluCI	AATT	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	4 cut(s)	20, 34, 367, 433
MseI	TTAA	1 cut(s)	468
MspA1I	CMGCKG	1 cut(s)	48
MspI	CCGG	2 cut(s)	237, 464
MspR9I	CCNGG	4 cut(s)	237, 238, 247, 259
MvaI	CCWGG	2 cut(s)	247, 259
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	2 cut(s)	429, 489
NciI	CCSGG	2 cut(s)	237, 238
NdeII	GATC	3 cut(s)	111, 442, 460
NlaIII	CATG	1 cut(s)	383
NlaIV	GGNNCC	4 cut(s)	104, 241, 242, 276
PciSI	GCTCTTC	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	2 cut(s)	16, 202
PkrI	GCNGC	3 cut(s)	47, 55, 187
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PpuMI	RGGWCCY	1 cut(s)	240
PsiI	TTATAA	1 cut(s)	341
Psp124BI	GAGCTC	1 cut(s)	314
Psp5II	RGGWCCY	1 cut(s)	240
Psp6I	CCWGG	2 cut(s)	245, 257
PspFI	CCCAGC	2 cut(s)	142, 411
PspGI	CCWGG	2 cut(s)	245, 257
PspN4I	GGNNCC	4 cut(s)	104, 241, 242, 276
PspPI	GGNCC	3 cut(s)	103, 154, 240
PspPPI	RGGWCCY	1 cut(s)	240
PstNI	CAGNNNCTG	1 cut(s)	142
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SacI	GAGCTC	1 cut(s)	314
SapI	GCTCTTC	1 cut(s)	259
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	3 cut(s)	46, 54, 186
Sau3AI	GATC	3 cut(s)	111, 442, 460
Sau96I	GGNCC	3 cut(s)	103, 154, 240
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	4 cut(s)	237, 238, 247, 259
SduI	GDGCHC	2 cut(s)	96, 314
SinI	GGWCC	3 cut(s)	103, 154, 240
SmaI	CCCGGG	1 cut(s)	238
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	1 cut(s)	333
SsiI	CCGC	4 cut(s)	24, 48, 74, 186
SspMI	CTAG	1 cut(s)	419
SstI	GAGCTC	1 cut(s)	314
StyD4I	CCNGG	4 cut(s)	235, 236, 245, 257
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	19, 405
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	1 cut(s)	333
TauI	GCSGC	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TseI	GCWGC	2 cut(s)	45, 53
TspMI	CCCGGG	1 cut(s)	236
VpaK11BI	GGWCC	3 cut(s)	103, 154, 240
XapI	RAATTY	1 cut(s)	333
XmaI	CCCGGG	1 cut(s)	236
XspI	CTAG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.