Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001920

Physical Location & Seq

Genomic Coordinates Reverse (-)

8160644 .. 8163863

Gene Structure 3220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g06970.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGTCTTGTCCAATAATAACAAAGAACGAGAAATTGCCAGATTCTTTGCACGCAATTTCAACCTTTTTTGAAAATTCCCCCTTCCTCCCTCCCCTCTCCCTCATTCAGACTCGCGCGTACCGAGGTTTTGCCACTTTCTTTTGCAAGAGGTGCTTTCGGCTCCACAGTCCACCATTTCCAATGGTGGTTCGGAGAAATCGACGCGGAGGCGACTCCGAAGAGGGCGGCGGAGCAACCGTAGAGAATGGAAGTGCGGGGGTTTCAGGGTACGAGCACTTCAGGGACCAAAAGATCAGAGAGAACAAGGAGAGATTGCAGAAGCTGGGAATTTTGGACCTTGCCAAGAAGCTCAAGACCGAAGCTGCCGCCCCAAAACGTCCCTACCGACCCAAAACCCACAACCCACTTCCTAATCCTGGGTCCCCCAGGCGCTCTTCCAGGTTGAAGAGTGTGGCTCCAGTAGATTATGTGGAAAAGAAGAAAAACGAGAGCTCAAAGAGAAAGAGTGTTGAAATTTTTATAAAGGAAGGTTCAAAGCCAGAGATTTATACAGAGGAACATGAGAAGCTGTTGGGGGATTGTGTCGAAAGCTGGGAGCTTGGTGTTGATGGCTATGGTGAGGATCGGAAGCGCATTTACGATCCGGTTAATGGAGAAACTTGCCATCAATGCAGGCAGAAAACTCTTGGGCATCATACAAAGTGCTGGAAATGTGACTTGGTCCAAGGGCAGTTTTGTGGAGATTGCTTATACATGAGATATGGAGAGAATGTGATTGAAGCCAATGAAAATCCTGGTTGGACATGTCCTGTTTGTCGGGGCATCTGCAACTGTAGTCTCTGCCGTCAAGCAAAGGGGTGGGAACCCACCGGTAATCTGTATAGAAAGGTCATAAAACTGGGTTACAAGTCTGTGGCACACTATCTTATCCAAACCCGCCGTTCCCCAACAAACTCAGAGACCACAGGTGAAGAAGTTGTAGCAGAGGGATCAACTCCTTCAGTGGAACCCTCTTCACATGATGAATCTTCAGGAACAGGCAATGACCTTGATACTAGCAAGCATGTTGATGACGATGATGTGGGCAACGTAGATGCTGTTGCTGCTGGTGATGCAGTTGACGGCGAGGCAAAGAAAAAGCTGAGAAGGAATACAAGGCTGAGCAAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-4CXXC_R1

Protein Analysis

391

Amino Acids

43.62

Weight (kDa)

8.69

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37110 AT4G37110 AT4G37110 AT4G37110
fragaria_vesca	FvH4_1g14770 FvH4_1g14770 FvH4_1g14770 FvH4_2g07200 FvH4_2g07200
malus_domestica	MD02G1160900.v1.1 MD05G1072600.v1.1 MD10G1087200.v1.1 MD10G1087400.v1.1 MD15G1275000.v1.1
prunus_persica	Prupe.7G142700_v2.0.a1 Prupe.7G142700_v2.0.a1 Prupe.8G113300_v2.0.a1 Prupe.8G113300_v2.0.a1 Prupe.8G113400_v2.0.a1 Prupe.8G113400_v2.0.a1
pyrus_communis	pycom02g12700 pycom05g06480 pycom10g06970 pycom10g08140 pycom15g23810
rosa_chinensis	RchiOBHm_Chr2g0103711 RchiOBHm_Chr6g0259631 RchiOBHm_Chr6g0259651
rosa_laevigata	RLG00000014516 RLG00000017251
rosa_multiflora	Rmu_sc0000536.1_g000015
rosa_roxburghii	Rroxscaffold_2G00139460 Rroxscaffold_7G00206930
rosa_rugosa	Rorug02G0116800 Rorug05G0590100
rosa_samantha	Rh2AG165600 Rh2BG172900 Rh2CG171600 Rh2DG171200 Rh6AG106300 Rh6BG100800 Rh6BG100900 Rh6CG095400 Rh6DG089300
rosa_wichuraiana	Rw2G012970 Rw6G009190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	521
AccII	CGCG	3 cut(s)	114, 116, 204
AciI	CCGC	6 cut(s)	204, 225, 228, 254, 366, 937
AclWI	GGATC	3 cut(s)	630, 635, 997
AcsI	RAATTY	3 cut(s)	73, 327, 513
AcuI	CTGAAG	3 cut(s)	262, 984, 1014
AfaI	GTAC	2 cut(s)	119, 269
AfiI	CCNNNNNNNGG	2 cut(s)	416, 650
AflIII	ACRYGT	1 cut(s)	803
AgeI	ACCGGT	1 cut(s)	869
AgsI	TTSAA	6 cut(s)	60, 71, 445, 512, 534, 779
AjnI	CCWGG	4 cut(s)	415, 425, 437, 793
AjuI	GAANNNNNNNTTGG	2 cut(s)	701, 733
AluBI	AGCT	8 cut(s)	322, 349, 362, 492, 568, 591, 598, 1141
AluI	AGCT	8 cut(s)	322, 349, 362, 492, 568, 591, 598, 1141
Alw21I	GWGCWC	2 cut(s)	276, 494
Alw26I	GTCTC	2 cut(s)	842, 953
AlwI	GGATC	3 cut(s)	630, 635, 997
AlwNI	CAGNNNCTG	1 cut(s)	322
ApeKI	GCWGC	2 cut(s)	362, 1103
ApoI	RAATTY	3 cut(s)	73, 327, 513
AsiGI	ACCGGT	1 cut(s)	869
AspLEI	GCGC	3 cut(s)	116, 432, 633
AspS9I	GGNCC	4 cut(s)	283, 334, 420, 721
AsuHPI	GGTGA	3 cut(s)	629, 980, 1121
AvaII	GGWCC	4 cut(s)	283, 334, 420, 721
BanII	GRGCYC	1 cut(s)	494
BarI	GAAGNNNNNNTAC	4 cut(s)	260, 292, 620, 652
Bbv12I	GWGCWC	2 cut(s)	276, 494
BbvI	GCAGC	2 cut(s)	349, 1090
BccI	CCATC	2 cut(s)	602, 672
BceAI	ACGGC	3 cut(s)	828, 924, 1138
BciT130I	CCWGG	4 cut(s)	417, 427, 439, 795
BcoDI	GTCTC	2 cut(s)	842, 953
BfaI	CTAG	1 cut(s)	1056
BfmI	CTRYAG	1 cut(s)	832
BfoI	RGCGCY	1 cut(s)	433
BisI	GCNGC	4 cut(s)	226, 363, 366, 1104
BlpI	GCTNAGC	1 cut(s)	1160
BlsI	GCNGC	4 cut(s)	227, 364, 367, 1105
Bme1390I	CCNGG	4 cut(s)	417, 427, 439, 795
Bme18I	GGWCC	4 cut(s)	283, 334, 420, 721
BmgT120I	GGNCC	4 cut(s)	283, 334, 420, 721
BmiI	GGNNCC	7 cut(s)	161, 284, 421, 422, 456, 864, 1008
BmrFI	CCNGG	4 cut(s)	417, 427, 439, 795
BmrI	ACTGGG	1 cut(s)	908
BmsI	GCATC	4 cut(s)	700, 831, 1084, 1102
BmuI	ACTGGG	1 cut(s)	908
BplI	GAGNNNNNCTC	2 cut(s)	439, 471
BpmI	CTGGAG	1 cut(s)	441
Bpu1102I	GCTNAGC	1 cut(s)	1160
BpuEI	CTTGAG	1 cut(s)	335
BsaI	GGTCTC	1 cut(s)	953
BsaJI	CCNNGG	4 cut(s)	121, 416, 425, 724
BsaWI	WCCGGW	2 cut(s)	643, 869
BsaXI	ACNNNNNCTCC	4 cut(s)	222, 252, 756, 786
Bsc4I	CCNNNNNNNGG	2 cut(s)	416, 650
Bse118I	RCCGGY	1 cut(s)	869
Bse1I	ACTGG	2 cut(s)	458, 903
Bse3DI	GCAATG	1 cut(s)	1048
BseBI	CCWGG	4 cut(s)	417, 427, 439, 795
BseDI	CCNNGG	4 cut(s)	121, 416, 425, 724
BseLI	CCNNNNNNNGG	2 cut(s)	416, 650
BseMI	GCAATG	1 cut(s)	1048
BseMII	CTCAG	3 cut(s)	969, 1133, 1151
BseNI	ACTGG	2 cut(s)	458, 903
BseXI	GCAGC	2 cut(s)	349, 1090
BseYI	CCCAGC	2 cut(s)	322, 591
Bsh1236I	CGCG	3 cut(s)	114, 116, 204
BshTI	ACCGGT	1 cut(s)	869
BsiHKAI	GWGCWC	2 cut(s)	276, 494
BsiSI	CCGG	2 cut(s)	644, 870
BslFI	GGGAC	3 cut(s)	296, 363, 406
BslI	CCNNNNNNNGG	2 cut(s)	416, 650
BsmAI	GTCTC	2 cut(s)	842, 953
BsmFI	GGGAC	3 cut(s)	296, 363, 406
Bso31I	GGTCTC	1 cut(s)	953
Bsp1286I	GDGCHC	2 cut(s)	276, 494
Bsp143I	GATC	4 cut(s)	291, 622, 640, 989
Bsp1720I	GCTNAGC	1 cut(s)	1160
BspACI	CCGC	6 cut(s)	204, 225, 228, 254, 366, 937
BspCNI	CTCAG	3 cut(s)	968, 1134, 1152
BspFNI	CGCG	3 cut(s)	114, 116, 204
BspLI	GGNNCC	7 cut(s)	161, 284, 421, 422, 456, 864, 1008
BspPI	GGATC	3 cut(s)	630, 635, 997
BspQI	GCTCTTC	1 cut(s)	439
BspTNI	GGTCTC	1 cut(s)	953
BsrDI	GCAATG	1 cut(s)	1048
BsrFI	RCCGGY	1 cut(s)	869
BsrI	ACTGG	2 cut(s)	458, 903
BssAI	RCCGGY	1 cut(s)	869
BssECI	CCNNGG	4 cut(s)	121, 416, 425, 724
BssMI	GATC	4 cut(s)	291, 622, 640, 989
BssT1I	CCWWGG	1 cut(s)	724
Bst2UI	CCWGG	4 cut(s)	417, 427, 439, 795
Bst4CI	ACNGT	3 cut(s)	167, 238, 833
Bst6I	CTCTTC	4 cut(s)	213, 439, 440, 1018
BstAPI	GCANNNNNTGC	1 cut(s)	150
BstC8I	GCNNGC	3 cut(s)	51, 674, 1061
BstDEI	CTNAG	3 cut(s)	955, 1142, 1160
BstFNI	CGCG	3 cut(s)	114, 116, 204
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	3 cut(s)	116, 432, 633
BstKTI	GATC	4 cut(s)	294, 625, 643, 992
BstMAI	GTCTC	2 cut(s)	842, 953
BstMBI	GATC	4 cut(s)	291, 622, 640, 989
BstMWI	GCNNNNNNNGC	4 cut(s)	150, 669, 1103, 1112
BstNI	CCWGG	4 cut(s)	417, 427, 439, 795
BstNSI	RCATGY	2 cut(s)	807, 1067
BstSCI	CCNGG	4 cut(s)	415, 425, 437, 793
BstSFI	CTRYAG	1 cut(s)	832
BstUI	CGCG	3 cut(s)	114, 116, 204
BstV1I	GCAGC	2 cut(s)	349, 1090
BtsIMutI	CAGTG	1 cut(s)	1008
Cac8I	GCNNGC	3 cut(s)	51, 674, 1061
CaiI	CAGNNNCTG	1 cut(s)	322
CfoI	GCGC	3 cut(s)	116, 432, 633
Cfr10I	RCCGGY	1 cut(s)	869
Cfr13I	GGNCC	4 cut(s)	283, 334, 420, 721
CseI	GACGC	1 cut(s)	210
Csp6I	GTAC	2 cut(s)	118, 268
CspAI	ACCGGT	1 cut(s)	869
CviAII	CATG	5 cut(s)	560, 754, 804, 1019, 1064
CviQI	GTAC	2 cut(s)	118, 268
DdeI	CTNAG	3 cut(s)	955, 1142, 1160
DpnI	GATC	4 cut(s)	293, 624, 642, 991
DpnII	GATC	4 cut(s)	291, 622, 640, 989
Eam1104I	CTCTTC	4 cut(s)	213, 439, 440, 1018
EarI	CTCTTC	4 cut(s)	213, 439, 440, 1018
EciI	GGCGGA	1 cut(s)	243
Ecl136II	GAGCTC	1 cut(s)	492
Eco130I	CCWWGG	1 cut(s)	724
Eco24I	GRGCYC	1 cut(s)	494
Eco31I	GGTCTC	1 cut(s)	953
Eco47I	GGWCC	4 cut(s)	283, 334, 420, 721
Eco53kI	GAGCTC	1 cut(s)	492
Eco57I	CTGAAG	3 cut(s)	262, 984, 1014
EcoICRI	GAGCTC	1 cut(s)	492
EcoO109I	RGGNCCY	1 cut(s)	420
EcoRII	CCWGG	4 cut(s)	415, 425, 437, 793
EcoT14I	CCWWGG	1 cut(s)	724
EcoT38I	GRGCYC	1 cut(s)	494
ErhI	CCWWGG	1 cut(s)	724
FaeI	CATG	5 cut(s)	563, 757, 807, 1022, 1067
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FaqI	GGGAC	3 cut(s)	296, 363, 406
FatI	CATG	5 cut(s)	559, 753, 803, 1018, 1063
FauI	CCCGC	2 cut(s)	247, 944
Fnu4HI	GCNGC	4 cut(s)	226, 363, 366, 1104
FriOI	GRGCYC	1 cut(s)	494
Fsp4HI	GCNGC	4 cut(s)	226, 363, 366, 1104
FspBI	CTAG	1 cut(s)	1056
GlaI	GCGC	3 cut(s)	115, 431, 632
GluI	GCNGC	4 cut(s)	226, 363, 366, 1104
GsaI	CCCAGC	2 cut(s)	326, 595
GsuI	CTGGAG	1 cut(s)	441
HaeII	RGCGCY	1 cut(s)	433
HapII	CCGG	2 cut(s)	644, 870
HgaI	GACGC	1 cut(s)	210
HhaI	GCGC	3 cut(s)	116, 432, 633
Hin1II	CATG	5 cut(s)	563, 757, 807, 1022, 1067
Hin6I	GCGC	3 cut(s)	114, 430, 631
HinP1I	GCGC	3 cut(s)	114, 430, 631
HincII	GTYRAC	1 cut(s)	1120
HindII	GTYRAC	1 cut(s)	1120
HinfI	GANTC	4 cut(s)	41, 109, 212, 1025
HpaII	CCGG	2 cut(s)	644, 870
HphI	GGTGA	3 cut(s)	629, 980, 1121
Hpy166II	GTNNAC	2 cut(s)	170, 1120
Hpy188I	TCNGA	6 cut(s)	108, 192, 217, 296, 627, 958
Hpy188III	TCNNGA	2 cut(s)	352, 1032
Hpy8I	GTNNAC	2 cut(s)	170, 1120
Hpy99I	CGWCG	1 cut(s)	204
HpyAV	CCTTC	4 cut(s)	91, 521, 1008, 1140
HpyCH4III	ACNGT	3 cut(s)	167, 238, 833
HpyCH4IV	ACGT	2 cut(s)	376, 1089
HpyCH4V	TGCA	6 cut(s)	49, 144, 316, 672, 828, 1115
HpyF10VI	GCNNNNNNNGC	4 cut(s)	150, 669, 1103, 1112
HpyF3I	CTNAG	3 cut(s)	955, 1142, 1160
HpySE526I	ACGT	2 cut(s)	376, 1089
Hsp92II	CATG	5 cut(s)	563, 757, 807, 1022, 1067
HspAI	GCGC	3 cut(s)	114, 430, 631
KflI	GGGWCCC	1 cut(s)	420
Kzo9I	GATC	4 cut(s)	291, 622, 640, 989
LguI	GCTCTTC	1 cut(s)	439
LmnI	GCTCC	4 cut(s)	165, 230, 460, 595
Lsp1109I	GCAGC	2 cut(s)	349, 1090
LweI	GCATC	4 cut(s)	700, 831, 1084, 1102
MaeI	CTAG	1 cut(s)	1056
MaeII	ACGT	2 cut(s)	376, 1089
MaeIII	GTNAC	2 cut(s)	713, 902
MalI	GATC	4 cut(s)	293, 624, 642, 991
MboI	GATC	4 cut(s)	291, 622, 640, 989
MboII	GAAGA	7 cut(s)	230, 426, 457, 490, 983, 1005, 1020
MhlI	GDGCHC	2 cut(s)	276, 494
MluCI	AATT	5 cut(s)	32, 54, 73, 327, 513
MlyI	GAGTC	2 cut(s)	103, 206
MmeI	TCCRAC	1 cut(s)	779
MseI	TTAA	2 cut(s)	648, 1171
MslI	CAYNNNNRTG	1 cut(s)	1068
MspI	CCGG	2 cut(s)	644, 870
MspR9I	CCNGG	4 cut(s)	417, 427, 439, 795
MvaI	CCWGG	4 cut(s)	417, 427, 439, 795
MvnI	CGCG	3 cut(s)	114, 116, 204
MwoI	GCNNNNNNNGC	4 cut(s)	150, 669, 1103, 1112
NdeII	GATC	4 cut(s)	291, 622, 640, 989
NlaIII	CATG	5 cut(s)	563, 757, 807, 1022, 1067
NlaIV	GGNNCC	7 cut(s)	161, 284, 421, 422, 456, 864, 1008
NmuCI	GTSAC	1 cut(s)	713
NspI	RCATGY	2 cut(s)	807, 1067
PciI	ACATGT	1 cut(s)	803
PciSI	GCTCTTC	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	3 cut(s)	118, 196, 382
PfeI	GAWTC	2 cut(s)	41, 1025
PflFI	GACNNNGTC	1 cut(s)	719
PinAI	ACCGGT	1 cut(s)	869
PkrI	GCNGC	4 cut(s)	227, 364, 367, 1105
PleI	GAGTC	2 cut(s)	103, 206
PpsI	GAGTC	2 cut(s)	103, 206
PpuMI	RGGWCCY	1 cut(s)	420
PscI	ACATGT	1 cut(s)	803
PsiI	TTATAA	1 cut(s)	521
Psp124BI	GAGCTC	1 cut(s)	494
Psp5II	RGGWCCY	1 cut(s)	420
Psp6I	CCWGG	4 cut(s)	415, 425, 437, 793
PspFI	CCCAGC	2 cut(s)	322, 591
PspGI	CCWGG	4 cut(s)	415, 425, 437, 793
PspN4I	GGNNCC	7 cut(s)	161, 284, 421, 422, 456, 864, 1008
PspPI	GGNCC	4 cut(s)	283, 334, 420, 721
PspPPI	RGGWCCY	1 cut(s)	420
PstNI	CAGNNNCTG	1 cut(s)	322
PsyI	GACNNNGTC	1 cut(s)	719
RsaI	GTAC	2 cut(s)	119, 269
RsaNI	GTAC	2 cut(s)	118, 268
RseI	CAYNNNNRTG	1 cut(s)	1068
SacI	GAGCTC	1 cut(s)	494
SapI	GCTCTTC	1 cut(s)	439
SaqAI	TTAA	2 cut(s)	648, 1171
SatI	GCNGC	4 cut(s)	226, 363, 366, 1104
Sau3AI	GATC	4 cut(s)	291, 622, 640, 989
Sau96I	GGNCC	4 cut(s)	283, 334, 420, 721
SchI	GAGTC	2 cut(s)	103, 206
ScrFI	CCNGG	4 cut(s)	417, 427, 439, 795
SduI	GDGCHC	2 cut(s)	276, 494
SfaNI	GCATC	4 cut(s)	700, 831, 1084, 1102
SfcI	CTRYAG	1 cut(s)	832
SinI	GGWCC	4 cut(s)	283, 334, 420, 721
SmiMI	CAYNNNNRTG	1 cut(s)	1068
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	5 cut(s)	32, 54, 73, 327, 513
SsiI	CCGC	6 cut(s)	204, 225, 228, 254, 366, 937
SspMI	CTAG	1 cut(s)	1056
SstI	GAGCTC	1 cut(s)	494
StyD4I	CCNGG	4 cut(s)	415, 425, 437, 793
StyI	CCWWGG	1 cut(s)	724
TaaI	ACNGT	3 cut(s)	167, 238, 833
TaiI	ACGT	2 cut(s)	379, 1092
TaqI	TCGA	2 cut(s)	199, 585
TaqII	GACCGA	1 cut(s)	371
TasI	AATT	5 cut(s)	32, 54, 73, 327, 513
TauI	GCSGC	2 cut(s)	228, 368
TfiI	GAWTC	2 cut(s)	41, 1025
Tru1I	TTAA	2 cut(s)	648, 1171
Tru9I	TTAA	2 cut(s)	648, 1171
TscAI	CASTG	1 cut(s)	1008
TseFI	GTSAC	1 cut(s)	713
TseI	GCWGC	2 cut(s)	362, 1103
Tsp45I	GTSAC	1 cut(s)	713
TspDTI	ATGAA	2 cut(s)	801, 1038
TspRI	CASTG	1 cut(s)	1008
Tth111I	GACNNNGTC	1 cut(s)	719
VpaK11BI	GGWCC	4 cut(s)	283, 334, 420, 721
XapI	RAATTY	3 cut(s)	73, 327, 513
XceI	RCATGY	2 cut(s)	807, 1067
XspI	CTAG	1 cut(s)	1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.