Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001920

Physical Location & Seq

Genomic Coordinates Reverse (-)

10486651 .. 10487487

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g08140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCAAAAGCTCTGCATCGTTGATATCTCTCTTCAGCTCAAATCTAACATTCAGTCGAGTGGATTAACTAAGAGCTATTCCGGCCGAAGTACGACGCCGTTTGGACCCCCTTCCATTCGGTCAGTAGGATCCACTCGTCGCTCTTCTAGATTGAAGAATGCGACACCAGTGAGCTACGCAGACGTGCATGTGTCGAGGAAGGATGAGGCTTCGTACATGAAAGGTATAATGCTGGACGAGGGTGATAGGCCGGAGATTTACACGGATGAGAAGCTGTTGGGCAACACTGATAAGACCTGGACTATGTTTGTGGATGGTTATGGAAAAGATGGAAAGCGGATTTATAACCCAGTTAGAGGAAAGACTTGCCATCAATGTTTTAAGATTTCAATTTTTTTTCATTTGTTGAAAAAAAAAAAAAAAAAATTTGAAACCGAACTGAAAAAAAATGAACCAAACCGAATCGAAATTTCGGTTCAATTTCAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-4CXXC_R1

Protein Analysis

164

Amino Acids

18.65

Weight (kDa)

9.75

Isoelectric Point (pI)

38.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37110 AT4G37110 AT4G37110 AT4G37110
fragaria_vesca	FvH4_1g14770 FvH4_1g14770 FvH4_1g14770 FvH4_2g07200 FvH4_2g07200
malus_domestica	MD02G1160900.v1.1 MD05G1072600.v1.1 MD10G1087200.v1.1 MD10G1087400.v1.1 MD15G1275000.v1.1
prunus_persica	Prupe.7G142700_v2.0.a1 Prupe.7G142700_v2.0.a1 Prupe.8G113300_v2.0.a1 Prupe.8G113300_v2.0.a1 Prupe.8G113400_v2.0.a1 Prupe.8G113400_v2.0.a1
pyrus_communis	pycom02g12700 pycom05g06480 pycom10g06970 pycom10g08140 pycom15g23810
rosa_chinensis	RchiOBHm_Chr2g0103711 RchiOBHm_Chr6g0259631 RchiOBHm_Chr6g0259651
rosa_laevigata	RLG00000014516 RLG00000017251
rosa_multiflora	Rmu_sc0000536.1_g000015
rosa_roxburghii	Rroxscaffold_2G00139460 Rroxscaffold_7G00206930
rosa_rugosa	Rorug02G0116800 Rorug05G0590100
rosa_samantha	Rh2AG165600 Rh2BG172900 Rh2CG171600 Rh2DG171200 Rh6AG106300 Rh6BG100800 Rh6BG100900 Rh6CG095400 Rh6DG089300
rosa_wichuraiana	Rw2G012970 Rw6G009190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AciI	CCGC	1 cut(s)	337
AclWI	GGATC	2 cut(s)	123, 136
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	2 cut(s)	425, 468
AcuI	CTGAAG	1 cut(s)	17
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	2 cut(s)	91, 215
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	6 cut(s)	154, 390, 409, 431, 479, 485
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	296
AluBI	AGCT	5 cut(s)	10, 37, 75, 174, 274
AluI	AGCT	5 cut(s)	10, 37, 75, 174, 274
AlwI	GGATC	2 cut(s)	123, 136
AoxI	GGCC	2 cut(s)	82, 248
ApoI	RAATTY	2 cut(s)	425, 468
AspS9I	GGNCC	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	104
BamHI	GGATCC	1 cut(s)	128
BccI	CCATC	3 cut(s)	308, 323, 378
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	298
BfaI	CTAG	1 cut(s)	147
Bme1390I	CCNGG	1 cut(s)	298
Bme18I	GGWCC	1 cut(s)	104
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	2 cut(s)	106, 130
BmrFI	CCNGG	1 cut(s)	298
BmrI	ACTGGG	1 cut(s)	344
BmsI	GCATC	1 cut(s)	24
BmuI	ACTGGG	1 cut(s)	344
BsaHI	GRCGYC	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	2 cut(s)	167, 350
BseBI	CCWGG	1 cut(s)	298
BseGI	GGATG	3 cut(s)	208, 271, 319
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseNI	ACTGG	2 cut(s)	167, 350
BseX3I	CGGCCG	1 cut(s)	82
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	84, 250
BsiEI	CGRYCG	1 cut(s)	85
BsiSI	CCGG	2 cut(s)	81, 251
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	2 cut(s)	84, 250
Bsp143I	GATC	1 cut(s)	128
BspACI	CCGC	1 cut(s)	337
BspANI	GGCC	2 cut(s)	84, 250
BspLI	GGNNCC	2 cut(s)	106, 130
BspPI	GGATC	2 cut(s)	123, 136
BspQI	GCTCTTC	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	167, 350
BssMI	GATC	1 cut(s)	128
BssNI	GRCGYC	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	298
Bst6I	CTCTTC	2 cut(s)	36, 148
BstACI	GRCGYC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	3 cut(s)	208, 271, 319
BstKTI	GATC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	128
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstNI	CCWGG	1 cut(s)	298
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
BstZI	CGGCCG	1 cut(s)	82
BsuRI	GGCC	2 cut(s)	84, 250
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	3 cut(s)	208, 271, 319
BtsIMutI	CAGTG	2 cut(s)	174, 285
Cfr13I	GGNCC	1 cut(s)	104
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	2 cut(s)	90, 214
CviAII	CATG	2 cut(s)	188, 217
CviJI	RGCY	8 cut(s)	10, 37, 75, 84, 174, 209, 250, 274
CviKI_1	RGCY	8 cut(s)	10, 37, 75, 84, 174, 209, 250, 274
CviQI	GTAC	2 cut(s)	90, 214
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	1 cut(s)	130
DpnII	GATC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	82
EagI	CGGCCG	1 cut(s)	82
Eam1104I	CTCTTC	2 cut(s)	36, 148
EarI	CTCTTC	2 cut(s)	36, 148
EclXI	CGGCCG	1 cut(s)	82
Eco32I	GATATC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	104
Eco52I	CGGCCG	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	296
EcoRV	GATATC	1 cut(s)	25
FaeI	CATG	2 cut(s)	191, 220
FaiI	YATR	6 cut(s)	189, 218, 227, 305, 321, 345
FatI	CATG	2 cut(s)	187, 216
FokI	GGATG	3 cut(s)	215, 278, 326
FspBI	CTAG	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	84, 250
HapII	CCGG	2 cut(s)	81, 251
HgaI	GACGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	191, 220
HinfI	GANTC	1 cut(s)	462
HpaII	CCGG	2 cut(s)	81, 251
HphI	GGTGA	1 cut(s)	254
Hpy188III	TCNNGA	1 cut(s)	147
Hpy99I	CGWCG	2 cut(s)	97, 141
HpyAV	CCTTC	2 cut(s)	120, 193
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	3 cut(s)	4, 15, 187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	191, 220
Kzo9I	GATC	1 cut(s)	128
LguI	GCTCTTC	1 cut(s)	148
LpnPI	CCDG	7 cut(s)	94, 180, 218, 264, 283, 310, 363
LweI	GCATC	1 cut(s)	24
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	183
MalI	GATC	1 cut(s)	130
MboI	GATC	1 cut(s)	128
MboII	GAAGA	3 cut(s)	23, 135, 166
MflI	RGATCY	1 cut(s)	128
MluCI	AATT	5 cut(s)	390, 425, 468, 479, 485
MnlI	CCTC	4 cut(s)	189, 199, 232, 350
MseI	TTAA	2 cut(s)	65, 381
MspI	CCGG	2 cut(s)	81, 251
MspR9I	CCNGG	1 cut(s)	298
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	298
MwoI	GCNNNNNNNGC	1 cut(s)	81
NdeII	GATC	1 cut(s)	128
NlaIII	CATG	2 cut(s)	191, 220
NlaIV	GGNNCC	2 cut(s)	106, 130
NspI	RCATGY	1 cut(s)	191
PciSI	GCTCTTC	1 cut(s)	148
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	462
PsiI	TTATAA	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	2 cut(s)	106, 130
PspPI	GGNCC	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	128
RsaI	GTAC	2 cut(s)	91, 215
RsaNI	GTAC	2 cut(s)	90, 214
SapI	GCTCTTC	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	65, 381
Sau3AI	GATC	1 cut(s)	128
Sau96I	GGNCC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	298
SetI	ASST	8 cut(s)	12, 39, 77, 176, 186, 226, 276, 299
SfaNI	GCATC	1 cut(s)	24
SinI	GGWCC	1 cut(s)	104
Sse9I	AATT	5 cut(s)	390, 425, 468, 479, 485
SsiI	CCGC	1 cut(s)	337
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	296
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	3 cut(s)	56, 194, 465
TaqII	GACCGA	1 cut(s)	108
TasI	AATT	5 cut(s)	390, 425, 468, 479, 485
TfiI	GAWTC	1 cut(s)	462
Tru1I	TTAA	2 cut(s)	65, 381
Tru9I	TTAA	2 cut(s)	65, 381
TscAI	CASTG	2 cut(s)	174, 292
TspDTI	ATGAA	3 cut(s)	233, 389, 465
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	2 cut(s)	174, 292
VpaK11BI	GGWCC	1 cut(s)	104
XapI	RAATTY	2 cut(s)	425, 468
XbaI	TCTAGA	1 cut(s)	146
XceI	RCATGY	1 cut(s)	191
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.