Rh6BG100900

Cell division cycle-associated 7-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001920
Physical Location & Seq
Reverse (-)
15803310 .. 15804069
760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG100900.1

Sequence Viewer

Length: 423 bp
ATGAGATATGGAGAGAATGTGATCGAAGCCAGCAAAAATCCTGATTGGGTTTGCCCTGTTTGTCGGGGCATTTGCAACTGCAGTCTTTGCCGTAAAGAAAAAGGGTGGGAGCCCACTGGTAATCTGTATAGGAAGGTCATAAATCTGGGTTACAAGTCTGTGGCACATTATCTTATTCAAACCCGTCATTCCCAACGAAAATCAGAAACCTCAGGTGCAGAGGAATCAATGCATGATGACATGAAACAAGAAACAGAAGAGGCACACTTAACAGGGGGAGAAGAAATGGAAGAGGTTCAGTGTGTTGATGCCAAAGATTTGGGTAACATTGATGATACTGGTGCTGCCGTTCCTGGGGATTCAGTTGAAGGTGAGACAAAGGGAAAGCCGAGAAGGAGGAGCACAAGGTTGAGGAAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

140

Amino Acids

15.73

Weight (kDa)

6.11

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 1 - 58 1e-23 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 354
AgsI TTSAA 2 cut(s) 179, 368
AjnI CCWGG 1 cut(s) 352
Alw21I GWGCWC 1 cut(s) 404
Alw26I GTCTC 1 cut(s) 368
ApeKI GCWGC 1 cut(s) 344
Asp700I GAANNNNTTC 1 cut(s) 294
AsuHPI GGTGA 1 cut(s) 383
AxyI CCTNAGG 1 cut(s) 211
BanII GRGCYC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 404
BbvI GCAGC 1 cut(s) 331
BceAI ACGGC 2 cut(s) 75, 332
BciT130I CCWGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 368
BfmI CTRYAG 1 cut(s) 79
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
Bme1390I CCNGG 1 cut(s) 354
BmiI GGNNCC 1 cut(s) 111
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 353
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 354
Bse1I ACTGG 2 cut(s) 121, 343
Bse21I CCTNAGG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 353
BseLI CCNNNNNNNGG 1 cut(s) 354
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 2 cut(s) 121, 343
BseRI GAGGAG 1 cut(s) 412
BseXI GCAGC 1 cut(s) 331
BsgI GTGCAG 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 404
BslI CCNNNNNNNGG 1 cut(s) 354
BsmAI GTCTC 1 cut(s) 368
Bsp1286I GDGCHC 2 cut(s) 114, 404
Bsp143I GATC 1 cut(s) 21
BspCNI CTCAG 1 cut(s) 224
BspLI GGNNCC 1 cut(s) 111
BspMAI CTGCAG 1 cut(s) 83
BsrI ACTGG 2 cut(s) 121, 343
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 354
Bst6I CTCTTC 2 cut(s) 252, 285
BstAPI GCANNNNNTGC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 211
BstKTI GATC 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 368
BstMBI GATC 1 cut(s) 21
BstMWI GCNNNNNNNGC 1 cut(s) 87
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstSFI CTRYAG 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 331
BstXI CCANNNNNNTGG 1 cut(s) 319
Bsu36I CCTNAGG 1 cut(s) 211
BtsIMutI CAGTG 2 cut(s) 114, 305
Cac8I GCNNGC 1 cut(s) 31
CviAII CATG 2 cut(s) 233, 241
CviJI RGCY 3 cut(s) 29, 112, 388
CviKI_1 RGCY 3 cut(s) 29, 112, 388
DdeI CTNAG 1 cut(s) 211
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
Eam1104I CTCTTC 2 cut(s) 252, 285
EarI CTCTTC 2 cut(s) 252, 285
Eco24I GRGCYC 1 cut(s) 114
Eco81I CCTNAGG 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 114
FaeI CATG 2 cut(s) 236, 244
FaiI YATR 5 cut(s) 9, 129, 140, 234, 242
FatI CATG 2 cut(s) 232, 240
Fnu4HI GCNGC 1 cut(s) 345
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 345
GluI GCNGC 1 cut(s) 345
Hin1II CATG 2 cut(s) 236, 244
HinfI GANTC 2 cut(s) 224, 359
HphI GGTGA 1 cut(s) 383
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 41
HpyAV CCTTC 3 cut(s) 127, 362, 387
HpyCH4V TGCA 4 cut(s) 75, 81, 218, 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 87
HpyF3I CTNAG 1 cut(s) 211
Hsp92II CATG 2 cut(s) 236, 244
Kzo9I GATC 1 cut(s) 21
LmnI GCTCC 2 cut(s) 109, 399
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 1 cut(s) 298
MaeIII GTNAC 2 cut(s) 149, 323
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 3 cut(s) 269, 293, 302
MhlI GDGCHC 2 cut(s) 114, 404
MnlI CCTC 6 cut(s) 214, 220, 253, 286, 390, 405
Mph1103I ATGCAT 1 cut(s) 234
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 1 cut(s) 87
NdeII GATC 1 cut(s) 21
NlaIII CATG 2 cut(s) 236, 244
NlaIV GGNNCC 1 cut(s) 111
NmeAIII GCCGAG 1 cut(s) 414
NsiI ATGCAT 1 cut(s) 234
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 2 cut(s) 224, 359
PkrI GCNGC 1 cut(s) 346
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 111
PstI CTGCAG 1 cut(s) 83
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 1 cut(s) 21
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 2 cut(s) 114, 404
SetI ASST 6 cut(s) 138, 212, 217, 297, 373, 410
SfaNI GCATC 1 cut(s) 298
SfcI CTRYAG 1 cut(s) 79
StyD4I CCNGG 1 cut(s) 352
TaqI TCGA 1 cut(s) 24
TfiI GAWTC 2 cut(s) 224, 359
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 2 cut(s) 121, 305
TseI GCWGC 1 cut(s) 344
TspDTI ATGAA 1 cut(s) 257
TspRI CASTG 2 cut(s) 121, 305
XmnI GAANNNNTTC 1 cut(s) 294
Zsp2I ATGCAT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.