RchiOBHm_Chr6g0259631

Cell division cycle-associated 7-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001920
Physical Location & Seq
Forward (+)
14877214 .. 14880324
3111 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23281

Sequence Viewer

Length: 1053 bp
ATGTTTCCACTTTCCGACGGCCCAAAAATGGTGAGCCGAAGAACCCGAGGTCCCAAACCCGCCGCCGACGGCGACGAAGAAACCGGAAGCGGAGACAACGCAGCCGCAGAGGTTTCGGACTACGAGCAAATCAGAGACCAACGGATCAAAGAGAACAAGGAGCGAATGCAGAAGCTGGGCATTTTCGACCTTTCACTCCAGCTCAAGTCCAAACCCTCCGCCGCTTCAAAACGCGGCCGTCCGTTGAAGGACCCTTCCGATCAGACCAACACCATAACCAAAACCTCTCTCTCCCCGGCAAGGCGTTCCTCTAGGTTGAAGACTCTGGCTCCGGTGAGTTATGTGGAGATTAGGCCCAAAGGGAAGAGGGAGTCTTCGTGGAATGGTGAGATTAATATCAAGGAGGGTATAAGGCCAGAGATTTATAGTGATGAGCATGAAAAGCTATTGGGGGATTGTAAGGAGACTTGGGAACTCTCGGTTGATGGGTATGGAGAAGACGGGAAGCGGATTTATGATCCGGTTAAGGGTGAAACTTGCCACCAATGCAGGCAGAAAACTCTTGGTCAGCATACACATTGCTGCAAATGTGACTTGGTCCAAGGGCAGTTTTGTGGAGATTGCTTATACATGAGATATGGAGAGAATGTGATCGAAGCCAGCAAAAATCCTGATTGGATTTGCCCTGTTTGTCGGGGCATTTGCAACTGCAGTCTTTGCCGTAAAGAAAAAGGGTGGGAGCCCACTGGTAATCTGTATAGGAAGGTCATAAATCTGGGTTACAAGTCTGTGGCACATTATCTTATTCAAACCCGTCGTTCCCAACGAAAATCAGAAACCTCAGGTGCAGAGGAATCAATGCATGATGATATGAAACAAGAAACAGAAGAGGCACACTTAACAGGGGGAGAAGAAATGGAAGAGGTTCAGTGTGTTGATGCCAAAGATTTGGGTAACATAGATGATACTGGTGCTGCCGTTGCTGGGGATTCAGTTGAAGGTGAGACAAAGGGAAAGCCGAGAAGGAGGAGCACAAGGTTGAGGAAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

350

Amino Acids

39.28

Weight (kDa)

7.86

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 172 - 268 5.1e-40 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 234
AciI CCGC 8 cut(s) 60, 63, 90, 105, 219, 222, 234, 508
AclWI GGATC 2 cut(s) 152, 512
AcoI YGGCCR 1 cut(s) 235
AfiI CCNNNNNNNGG 4 cut(s) 28, 300, 527, 984
AgsI TTSAA 5 cut(s) 228, 247, 319, 809, 998
AloI GAACNNNNNNTCC 2 cut(s) 34, 66
AluBI AGCT 3 cut(s) 175, 202, 445
AluI AGCT 3 cut(s) 175, 202, 445
Alw21I GWGCWC 1 cut(s) 1034
Alw26I GTCTC 4 cut(s) 87, 129, 458, 998
AlwI GGATC 2 cut(s) 152, 512
AlwNI CAGNNNCTG 1 cut(s) 175
Ama87I CYCGRG 1 cut(s) 45
AoxI GGCC 4 cut(s) 19, 235, 353, 413
ApeKI GCWGC 3 cut(s) 101, 582, 974
AseI ATTAAT 1 cut(s) 393
Asp700I GAANNNNTTC 1 cut(s) 924
AspS9I GGNCC 5 cut(s) 20, 50, 250, 354, 598
AsuC2I CCSGG 1 cut(s) 296
AsuHPI GGTGA 5 cut(s) 43, 346, 398, 542, 1013
AvaI CYCGRG 1 cut(s) 45
AvaII GGWCC 3 cut(s) 50, 250, 598
AxyI CCTNAGG 1 cut(s) 841
BanII GRGCYC 1 cut(s) 744
BbsI GAAGAC 3 cut(s) 326, 366, 504
Bbv12I GWGCWC 1 cut(s) 1034
BbvI GCAGC 3 cut(s) 113, 569, 961
BccI CCATC 1 cut(s) 479
BceAI ACGGC 5 cut(s) 34, 85, 222, 705, 962
BcgI CGANNNNNNTGC 2 cut(s) 96, 130
BcnI CCSGG 1 cut(s) 296
BcoDI GTCTC 4 cut(s) 87, 129, 458, 998
BfaI CTAG 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 709
BisI GCNGC 7 cut(s) 63, 102, 105, 222, 235, 583, 975
BlsI GCNGC 7 cut(s) 64, 103, 106, 223, 236, 584, 976
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 3 cut(s) 50, 250, 598
BmeT110I CYCGRG 1 cut(s) 45
BmgT120I GGNCC 5 cut(s) 20, 50, 250, 354, 598
BmiI GGNNCC 4 cut(s) 52, 252, 330, 741
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 1 cut(s) 928
BpiI GAAGAC 3 cut(s) 326, 366, 504
BpmI CTGGAG 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 296
BsaBI GATNNNNATC 1 cut(s) 395
BsaI GGTCTC 1 cut(s) 129
BsaJI CCNNGG 3 cut(s) 46, 294, 601
BsaWI WCCGGW 3 cut(s) 83, 331, 520
BsaXI ACNNNNNCTCC 6 cut(s) 313, 343, 362, 392, 633, 663
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 300, 527, 984
Bse1I ACTGG 2 cut(s) 751, 973
Bse21I CCTNAGG 1 cut(s) 841
Bse3DI GCAATG 1 cut(s) 577
Bse8I GATNNNNATC 1 cut(s) 395
BseDI CCNNGG 3 cut(s) 46, 294, 601
BseJI GATNNNNATC 1 cut(s) 395
BseLI CCNNNNNNNGG 4 cut(s) 28, 300, 527, 984
BseMI GCAATG 1 cut(s) 577
BseMII CTCAG 1 cut(s) 855
BseNI ACTGG 2 cut(s) 751, 973
BseRI GAGGAG 1 cut(s) 1042
BseX3I CGGCCG 1 cut(s) 235
BseXI GCAGC 3 cut(s) 113, 569, 961
BseYI CCCAGC 2 cut(s) 175, 983
BsgI GTGCAG 1 cut(s) 867
Bsh1236I CGCG 1 cut(s) 234
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 4 cut(s) 21, 237, 355, 415
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 1034
BsiHKCI CYCGRG 1 cut(s) 45
BsiSI CCGG 4 cut(s) 84, 296, 332, 521
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 4 cut(s) 28, 300, 527, 984
BsmAI GTCTC 4 cut(s) 87, 129, 458, 998
BsmFI GGGAC 1 cut(s) 36
BsmI GAATGC 1 cut(s) 171
BsnI GGCC 4 cut(s) 21, 237, 355, 415
Bso31I GGTCTC 1 cut(s) 129
BsoBI CYCGRG 1 cut(s) 45
Bsp1286I GDGCHC 2 cut(s) 744, 1034
Bsp143I GATC 4 cut(s) 144, 259, 517, 651
BspACI CCGC 8 cut(s) 60, 63, 90, 105, 219, 222, 234, 508
BspANI GGCC 4 cut(s) 21, 237, 355, 415
BspCNI CTCAG 1 cut(s) 854
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 4 cut(s) 52, 252, 330, 741
BspMAI CTGCAG 1 cut(s) 713
BspPI GGATC 2 cut(s) 152, 512
BspTNI GGTCTC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 577
BsrI ACTGG 2 cut(s) 751, 973
BssECI CCNNGG 3 cut(s) 46, 294, 601
BssMI GATC 4 cut(s) 144, 259, 517, 651
BssT1I CCWWGG 1 cut(s) 601
Bst6I CTCTTC 3 cut(s) 359, 882, 915
BstAPI GCANNNNNTGC 1 cut(s) 717
BstC8I GCNNGC 2 cut(s) 551, 661
BstDEI CTNAG 1 cut(s) 841
BstFNI CGCG 1 cut(s) 234
BstKTI GATC 4 cut(s) 147, 262, 520, 654
BstMAI GTCTC 4 cut(s) 87, 129, 458, 998
BstMBI GATC 4 cut(s) 144, 259, 517, 651
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 4 cut(s) 442, 546, 717, 980
BstSCI CCNGG 1 cut(s) 294
BstSFI CTRYAG 1 cut(s) 709
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 3 cut(s) 113, 569, 961
BstV2I GAAGAC 3 cut(s) 326, 366, 504
BstXI CCANNNNNNTGG 1 cut(s) 949
BstZI CGGCCG 1 cut(s) 235
Bsu36I CCTNAGG 1 cut(s) 841
BsuRI GGCC 4 cut(s) 21, 237, 355, 415
BtsIMutI CAGTG 2 cut(s) 744, 935
Cac8I GCNNGC 2 cut(s) 551, 661
CaiI CAGNNNCTG 1 cut(s) 175
Cfr13I GGNCC 5 cut(s) 20, 50, 250, 354, 598
CviAII CATG 3 cut(s) 437, 631, 863
DdeI CTNAG 1 cut(s) 841
DpnI GATC 4 cut(s) 146, 261, 519, 653
DpnII GATC 4 cut(s) 144, 259, 517, 651
EaeI YGGCCR 1 cut(s) 235
EagI CGGCCG 1 cut(s) 235
Eam1104I CTCTTC 3 cut(s) 359, 882, 915
EarI CTCTTC 3 cut(s) 359, 882, 915
EciI GGCGGA 1 cut(s) 208
EclXI CGGCCG 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 601
Eco24I GRGCYC 1 cut(s) 744
Eco31I GGTCTC 1 cut(s) 129
Eco47I GGWCC 3 cut(s) 50, 250, 598
Eco52I CGGCCG 1 cut(s) 235
Eco81I CCTNAGG 1 cut(s) 841
Eco88I CYCGRG 1 cut(s) 45
EcoO109I RGGNCCY 2 cut(s) 50, 250
EcoT14I CCWWGG 1 cut(s) 601
EcoT22I ATGCAT 1 cut(s) 864
EcoT38I GRGCYC 1 cut(s) 744
ErhI CCWWGG 1 cut(s) 601
FaeI CATG 3 cut(s) 440, 634, 866
FaqI GGGAC 1 cut(s) 36
FatI CATG 3 cut(s) 436, 630, 862
FauI CCCGC 1 cut(s) 67
Fnu4HI GCNGC 7 cut(s) 63, 102, 105, 222, 235, 583, 975
FriOI GRGCYC 1 cut(s) 744
Fsp4HI GCNGC 7 cut(s) 63, 102, 105, 222, 235, 583, 975
FspBI CTAG 1 cut(s) 312
GluI GCNGC 7 cut(s) 63, 102, 105, 222, 235, 583, 975
GsaI CCCAGC 2 cut(s) 179, 987
GsuI CTGGAG 1 cut(s) 182
HaeIII GGCC 4 cut(s) 21, 237, 355, 415
HapII CCGG 4 cut(s) 84, 296, 332, 521
Hin1II CATG 3 cut(s) 440, 634, 866
HinfI GANTC 4 cut(s) 322, 371, 854, 989
HpaII CCGG 4 cut(s) 84, 296, 332, 521
HphI GGTGA 5 cut(s) 43, 346, 398, 542, 1013
Hpy188I TCNGA 6 cut(s) 16, 118, 134, 259, 264, 835
Hpy188III TCNNGA 1 cut(s) 671
Hpy99I CGWCG 4 cut(s) 20, 71, 77, 819
HpyAV CCTTC 5 cut(s) 241, 264, 757, 992, 1017
HpyCH4V TGCA 7 cut(s) 169, 549, 585, 705, 711, 848, 862
HpyF10VI GCNNNNNNNGC 4 cut(s) 442, 546, 717, 980
HpyF3I CTNAG 1 cut(s) 841
Hsp92II CATG 3 cut(s) 440, 634, 866
Kzo9I GATC 4 cut(s) 144, 259, 517, 651
LmnI GCTCC 4 cut(s) 160, 334, 739, 1029
Lsp1109I GCAGC 3 cut(s) 113, 569, 961
LweI GCATC 1 cut(s) 928
MaeI CTAG 1 cut(s) 312
MaeIII GTNAC 3 cut(s) 590, 779, 953
MalI GATC 4 cut(s) 146, 261, 519, 653
MboI GATC 4 cut(s) 144, 259, 517, 651
MboII GAAGA 9 cut(s) 51, 89, 331, 366, 376, 509, 899, 923, 932
MhlI GDGCHC 2 cut(s) 744, 1034
MlyI GAGTC 2 cut(s) 316, 380
MmeI TCCRAC 1 cut(s) 39
Mph1103I ATGCAT 1 cut(s) 864
MroXI GAANNNNTTC 1 cut(s) 924
MseI TTAA 3 cut(s) 393, 525, 899
MspI CCGG 4 cut(s) 84, 296, 332, 521
MspR9I CCNGG 1 cut(s) 296
Mva1269I GAATGC 1 cut(s) 171
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 4 cut(s) 442, 546, 717, 980
NciI CCSGG 1 cut(s) 296
NdeII GATC 4 cut(s) 144, 259, 517, 651
NlaIII CATG 3 cut(s) 440, 634, 866
NlaIV GGNNCC 4 cut(s) 52, 252, 330, 741
NmeAIII GCCGAG 1 cut(s) 1044
NmuCI GTSAC 1 cut(s) 590
NsiI ATGCAT 1 cut(s) 864
PcsI WCGNNNNNNNCGW 1 cut(s) 823
PctI GAATGC 1 cut(s) 171
PdmI GAANNNNTTC 1 cut(s) 924
PfeI GAWTC 2 cut(s) 854, 989
PflFI GACNNNGTC 1 cut(s) 596
PkrI GCNGC 7 cut(s) 64, 103, 106, 223, 236, 584, 976
PleI GAGTC 2 cut(s) 316, 379
PpsI GAGTC 2 cut(s) 316, 379
PpuMI RGGWCCY 2 cut(s) 50, 250
PshBI ATTAAT 1 cut(s) 393
Psp5II RGGWCCY 2 cut(s) 50, 250
PspFI CCCAGC 2 cut(s) 175, 983
PspN4I GGNNCC 4 cut(s) 52, 252, 330, 741
PspPI GGNCC 5 cut(s) 20, 50, 250, 354, 598
PspPPI RGGWCCY 2 cut(s) 50, 250
PstI CTGCAG 1 cut(s) 713
PstNI CAGNNNCTG 1 cut(s) 175
PsyI GACNNNGTC 1 cut(s) 596
SaqAI TTAA 3 cut(s) 393, 525, 899
SatI GCNGC 7 cut(s) 63, 102, 105, 222, 235, 583, 975
Sau3AI GATC 4 cut(s) 144, 259, 517, 651
Sau96I GGNCC 5 cut(s) 20, 50, 250, 354, 598
SchI GAGTC 2 cut(s) 316, 380
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 2 cut(s) 744, 1034
SfaNI GCATC 1 cut(s) 928
SfcI CTRYAG 1 cut(s) 709
SinI GGWCC 3 cut(s) 50, 250, 598
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SsiI CCGC 8 cut(s) 60, 63, 90, 105, 219, 222, 234, 508
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 1 cut(s) 601
TaqI TCGA 2 cut(s) 186, 654
TauI GCSGC 4 cut(s) 65, 107, 224, 237
TfiI GAWTC 2 cut(s) 854, 989
Tru1I TTAA 3 cut(s) 393, 525, 899
Tru9I TTAA 3 cut(s) 393, 525, 899
TscAI CASTG 2 cut(s) 751, 935
TseFI GTSAC 1 cut(s) 590
TseI GCWGC 3 cut(s) 101, 582, 974
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 2 cut(s) 453, 887
TspGWI ACGGA 2 cut(s) 157, 231
TspRI CASTG 2 cut(s) 751, 935
Tth111I GACNNNGTC 1 cut(s) 596
VpaK11BI GGWCC 3 cut(s) 50, 250, 598
VspI ATTAAT 1 cut(s) 393
XmnI GAANNNNTTC 1 cut(s) 924
XspI CTAG 1 cut(s) 312
Zsp2I ATGCAT 1 cut(s) 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.