Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001920

Physical Location & Seq

Genomic Coordinates Reverse (-)

14171603 .. 14175007

Gene Structure 3405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G113300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGTGGTTCAGAGAAATCGAGGCCGAGGAGGCAACTCGGAAGTGAACAGTGGTGAAGGAACCGTAGATGGAACTGCAGGGGTTTCAGGGTACGAGCAGTTCAGGGACCAAAGGATCAAAGAGAACAAGGAGAGATTGCAGAAGCTGGGTCTTTTGGACTTCTCGCTGAAGCTCAAGCCGAAAGCTGCCCCTCCAAAACGTTCCCAGAGTCAGAGAGACCCTTCTGTTCAGACCAAAATCCACAACTCTGGGTCCCCCCCAAGGCGCTCTTCTAGGTTGAAGACTGTGGCTCCAGTAAGTTATGTGGAAATTAGAAAGCCTAAAGGGAAGAGAGAGACCTCAGGGAGTGTTAATATTTGTATCAAGGAGGGTTCACAGCCAGAGATTTATACAGAGGAACATGAGAAGCTGTTGGGGGATTGCATGACAAGCTGGACCATGGGTGTGGATGGCTATGGGGAAGATAGAAAACGCATATATGATGGGGTTAAGGGAGAAACTTGCCACCAATGCAGGCAGAAAACTCTTGGCCAGCATACACATTGCTGCAAATGTGACTTGGTCCAAGGGCAGTTATGTGGAGATTGCATATACACAAGATATGGAGAGAATGTGATTGAAGCCAACCAAAATCCTGATTGGGTTTGCCCTGCTTGTCGGGGCATCTGCAACTGCAGTCTTTGCCGTAAAGCAAAAGGGTGGGAACCCACTGGTAATCTGTATAGGAAGGTCTCAAAACTGGGTTACAAGTCGGTGGCACATTATCTTATTCAAACCCGCCGTTCCCAGATAAAATCAGAAACCTCAGGTGCAGAGGTTGCTGAAGAGGGATCAATTCCCTCGGCAGAGCCCTCTTCACATGATGAATCTCTGGAAACAGCCAAAAGCCTCGATAATAGCACAATACATCAACCCGTGGACTTAAAGCATGATGATATGGGAGAGGGTTACTTCACTGCAGAAGAAGAAATGGAAGAGGTGCACTTCATGGGCATCAAGCATGTTGATGTCGATGATGTGGGTAAGCTAGATGCTGTTGCTGCTGGTGATACTGTTGATGGTGAGGCAAAGGAAAAGCCAAGGAGGAGGACAAGGGTGAGCAGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-4CXXC_R1

Protein Analysis

370

Amino Acids

41.02

Weight (kDa)

8.12

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37110 AT4G37110 AT4G37110 AT4G37110
fragaria_vesca	FvH4_1g14770 FvH4_1g14770 FvH4_1g14770 FvH4_2g07200 FvH4_2g07200
malus_domestica	MD02G1160900.v1.1 MD05G1072600.v1.1 MD10G1087200.v1.1 MD10G1087400.v1.1 MD15G1275000.v1.1
prunus_persica	Prupe.7G142700_v2.0.a1 Prupe.7G142700_v2.0.a1 Prupe.8G113300_v2.0.a1 Prupe.8G113300_v2.0.a1 Prupe.8G113400_v2.0.a1 Prupe.8G113400_v2.0.a1
pyrus_communis	pycom02g12700 pycom05g06480 pycom10g06970 pycom10g08140 pycom15g23810
rosa_chinensis	RchiOBHm_Chr2g0103711 RchiOBHm_Chr6g0259631 RchiOBHm_Chr6g0259651
rosa_laevigata	RLG00000014516 RLG00000017251
rosa_multiflora	Rmu_sc0000536.1_g000015
rosa_roxburghii	Rroxscaffold_2G00139460 Rroxscaffold_7G00206930
rosa_rugosa	Rorug02G0116800 Rorug05G0590100
rosa_samantha	Rh2AG165600 Rh2BG172900 Rh2CG171600 Rh2DG171200 Rh6AG106300 Rh6BG100800 Rh6BG100900 Rh6CG095400 Rh6DG089300
rosa_wichuraiana	Rw2G012970 Rw6G009190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	778
AclI	AACGTT	1 cut(s)	199
AclWI	GGATC	2 cut(s)	122, 838
AcoI	YGGCCR	1 cut(s)	529
AcuI	CTGAAG	2 cut(s)	188, 843
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	261
AgsI	TTSAA	3 cut(s)	280, 620, 773
AjuI	GAANNNNNNNTTGG	2 cut(s)	253, 285
AluBI	AGCT	6 cut(s)	145, 172, 185, 409, 432, 1027
AluI	AGCT	6 cut(s)	145, 172, 185, 409, 432, 1027
Alw21I	GWGCWC	1 cut(s)	984
Alw26I	GTCTC	3 cut(s)	210, 329, 736
Alw44I	GTGCAC	1 cut(s)	980
AlwI	GGATC	2 cut(s)	122, 838
AlwNI	CAGNNNCTG	1 cut(s)	145
AoxI	GGCC	2 cut(s)	22, 529
ApaLI	GTGCAC	1 cut(s)	980
ApeKI	GCWGC	3 cut(s)	185, 546, 1040
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	4 cut(s)	106, 252, 435, 562
AsuHPI	GGTGA	4 cut(s)	65, 1058, 1073, 1108
AvaII	GGWCC	4 cut(s)	106, 252, 435, 562
AxyI	CCTNAGG	2 cut(s)	340, 805
BaeGI	GKGCMC	1 cut(s)	984
BalI	TGGCCA	1 cut(s)	531
BanII	GRGCYC	1 cut(s)	852
BbsI	GAAGAC	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	984
BbvI	GCAGC	3 cut(s)	172, 533, 1027
BccI	CCATC	4 cut(s)	62, 443, 476, 1052
BceAI	ACGGC	2 cut(s)	669, 765
BcoDI	GTCTC	3 cut(s)	210, 329, 736
BfaI	CTAG	2 cut(s)	273, 1028
BfmI	CTRYAG	3 cut(s)	75, 673, 957
BfoI	RGCGCY	1 cut(s)	268
BglI	GCCNNNNNGGC	1 cut(s)	30
BisI	GCNGC	3 cut(s)	186, 547, 1041
BlsI	GCNGC	3 cut(s)	187, 548, 1042
Bme18I	GGWCC	4 cut(s)	106, 252, 435, 562
BmgT120I	GGNCC	4 cut(s)	106, 252, 435, 562
BmiI	GGNNCC	6 cut(s)	61, 107, 253, 254, 291, 705
BmrI	ACTGGG	1 cut(s)	749
BmsI	GCATC	3 cut(s)	672, 1002, 1021
BmuI	ACTGGG	1 cut(s)	749
BpiI	GAAGAC	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	158
BsaI	GGTCTC	3 cut(s)	210, 329, 736
BsaJI	CCNNGG	7 cut(s)	25, 260, 438, 565, 840, 915, 1079
BsaXI	ACNNNNNCTCC	4 cut(s)	274, 304, 597, 627
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
Bse1I	ACTGG	3 cut(s)	293, 715, 744
Bse21I	CCTNAGG	2 cut(s)	340, 805
Bse3DI	GCAATG	1 cut(s)	541
BseDI	CCNNGG	7 cut(s)	25, 260, 438, 565, 840, 915, 1079
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMI	GCAATG	1 cut(s)	541
BseMII	CTCAG	2 cut(s)	354, 819
BseNI	ACTGG	3 cut(s)	293, 715, 744
BseRI	GAGGAG	2 cut(s)	42, 1099
BseSI	GKGCMC	1 cut(s)	984
BseXI	GCAGC	3 cut(s)	172, 533, 1027
BseYI	CCCAGC	1 cut(s)	145
BsgI	GTGCAG	1 cut(s)	831
BshFI	GGCC	2 cut(s)	24, 531
BsiHKAI	GWGCWC	1 cut(s)	984
BslFI	GGGAC	2 cut(s)	119, 238
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmAI	GTCTC	3 cut(s)	210, 329, 736
BsmFI	GGGAC	2 cut(s)	119, 238
BsnI	GGCC	2 cut(s)	24, 531
Bso31I	GGTCTC	3 cut(s)	210, 329, 736
Bsp1286I	GDGCHC	2 cut(s)	852, 984
Bsp143I	GATC	2 cut(s)	114, 830
Bsp19I	CCATGG	1 cut(s)	438
BspACI	CCGC	1 cut(s)	778
BspANI	GGCC	2 cut(s)	24, 531
BspCNI	CTCAG	2 cut(s)	353, 818
BspLI	GGNNCC	6 cut(s)	61, 107, 253, 254, 291, 705
BspMAI	CTGCAG	3 cut(s)	79, 677, 961
BspPI	GGATC	2 cut(s)	122, 838
BspQI	GCTCTTC	1 cut(s)	274
BspTNI	GGTCTC	3 cut(s)	210, 329, 736
BsrDI	GCAATG	1 cut(s)	541
BsrI	ACTGG	3 cut(s)	293, 715, 744
BssECI	CCNNGG	7 cut(s)	25, 260, 438, 565, 840, 915, 1079
BssMI	GATC	2 cut(s)	114, 830
BssT1I	CCWWGG	4 cut(s)	260, 438, 565, 1079
Bst4CI	ACNGT	4 cut(s)	50, 64, 286, 1054
Bst6I	CTCTTC	5 cut(s)	274, 323, 819, 859, 969
BstAPI	GCANNNNNTGC	2 cut(s)	681, 818
BstC8I	GCNNGC	2 cut(s)	515, 533
BstDEI	CTNAG	2 cut(s)	340, 805
BstDSI	CCRYGG	2 cut(s)	438, 915
BstF5I	GGATG	1 cut(s)	454
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	2 cut(s)	117, 833
BstMAI	GTCTC	3 cut(s)	210, 329, 736
BstMBI	GATC	2 cut(s)	114, 830
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 429, 510, 681, 818, 1040
BstNSI	RCATGY	1 cut(s)	1004
BstSFI	CTRYAG	3 cut(s)	75, 673, 957
BstSLI	GKGCMC	1 cut(s)	984
BstV1I	GCAGC	3 cut(s)	172, 533, 1027
BstV2I	GAAGAC	1 cut(s)	287
BstXI	CCANNNNNNTGG	2 cut(s)	248, 445
Bsu36I	CCTNAGG	2 cut(s)	340, 805
BsuRI	GGCC	2 cut(s)	24, 531
BtgI	CCRYGG	2 cut(s)	438, 915
BtsCI	GGATG	1 cut(s)	454
BtsI	GCAGTG	1 cut(s)	954
BtsIMutI	CAGTG	3 cut(s)	55, 708, 954
Cac8I	GCNNGC	2 cut(s)	515, 533
CaiI	CAGNNNCTG	1 cut(s)	145
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	4 cut(s)	106, 252, 435, 562
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	7 cut(s)	401, 424, 439, 860, 929, 988, 1001
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	2 cut(s)	340, 805
DpnI	GATC	2 cut(s)	116, 832
DpnII	GATC	2 cut(s)	114, 830
EaeI	YGGCCR	1 cut(s)	529
Eam1104I	CTCTTC	5 cut(s)	274, 323, 819, 859, 969
EarI	CTCTTC	5 cut(s)	274, 323, 819, 859, 969
Eco130I	CCWWGG	4 cut(s)	260, 438, 565, 1079
Eco24I	GRGCYC	1 cut(s)	852
Eco31I	GGTCTC	3 cut(s)	210, 329, 736
Eco47I	GGWCC	4 cut(s)	106, 252, 435, 562
Eco57I	CTGAAG	2 cut(s)	188, 843
Eco81I	CCTNAGG	2 cut(s)	340, 805
EcoO109I	RGGNCCY	1 cut(s)	252
EcoT14I	CCWWGG	4 cut(s)	260, 438, 565, 1079
EcoT38I	GRGCYC	1 cut(s)	852
ErhI	CCWWGG	4 cut(s)	260, 438, 565, 1079
FaeI	CATG	7 cut(s)	404, 427, 442, 863, 932, 991, 1004
FalI	AAGNNNNNCTT	2 cut(s)	253, 285
FaqI	GGGAC	2 cut(s)	119, 238
FatI	CATG	7 cut(s)	400, 423, 438, 859, 928, 987, 1000
FauI	CCCGC	1 cut(s)	785
Fnu4HI	GCNGC	3 cut(s)	186, 547, 1041
FokI	GGATG	1 cut(s)	461
FriOI	GRGCYC	1 cut(s)	852
Fsp4HI	GCNGC	3 cut(s)	186, 547, 1041
FspBI	CTAG	2 cut(s)	273, 1028
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	3 cut(s)	186, 547, 1041
GsaI	CCCAGC	1 cut(s)	149
GsuI	CTGGAG	1 cut(s)	276
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	2 cut(s)	24, 531
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	7 cut(s)	404, 427, 442, 863, 932, 991, 1004
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HinfI	GANTC	2 cut(s)	208, 866
HphI	GGTGA	4 cut(s)	65, 1058, 1073, 1108
Hpy166II	GTNNAC	4 cut(s)	46, 374, 919, 982
Hpy188I	TCNGA	5 cut(s)	12, 40, 213, 231, 799
Hpy188III	TCNNGA	2 cut(s)	635, 872
Hpy8I	GTNNAC	4 cut(s)	46, 374, 919, 982
HpyAV	CCTTC	3 cut(s)	50, 231, 721
HpyCH4III	ACNGT	4 cut(s)	50, 64, 286, 1054
HpyCH4IV	ACGT	1 cut(s)	199
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 429, 510, 681, 818, 1040
HpyF3I	CTNAG	2 cut(s)	340, 805
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	7 cut(s)	404, 427, 442, 863, 932, 991, 1004
HspAI	GCGC	1 cut(s)	265
KflI	GGGWCCC	1 cut(s)	252
Kzo9I	GATC	2 cut(s)	114, 830
LguI	GCTCTTC	1 cut(s)	274
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	3 cut(s)	172, 533, 1027
LweI	GCATC	3 cut(s)	672, 1002, 1021
MaeI	CTAG	2 cut(s)	273, 1028
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	3 cut(s)	554, 743, 947
MalI	GATC	2 cut(s)	116, 832
MboI	GATC	2 cut(s)	114, 830
MboII	GAAGA	9 cut(s)	261, 292, 340, 473, 836, 846, 974, 977, 986
MhlI	GDGCHC	2 cut(s)	852, 984
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	2 cut(s)	309, 834
MluNI	TGGCCA	1 cut(s)	531
MlyI	GAGTC	1 cut(s)	217
Mox20I	TGGCCA	1 cut(s)	531
MscI	TGGCCA	1 cut(s)	531
MseI	TTAA	3 cut(s)	351, 489, 923
MslI	CAYNNNNRTG	2 cut(s)	443, 1005
Msp20I	TGGCCA	1 cut(s)	531
MwoI	GCNNNNNNNGC	6 cut(s)	30, 429, 510, 681, 818, 1040
NcoI	CCATGG	1 cut(s)	438
NdeII	GATC	2 cut(s)	114, 830
NlaIII	CATG	7 cut(s)	404, 427, 442, 863, 932, 991, 1004
NlaIV	GGNNCC	6 cut(s)	61, 107, 253, 254, 291, 705
NmeAIII	GCCGAG	2 cut(s)	50, 821
NmuCI	GTSAC	1 cut(s)	554
NspI	RCATGY	1 cut(s)	1004
PciSI	GCTCTTC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	866
PflFI	GACNNNGTC	1 cut(s)	560
PkrI	GCNGC	3 cut(s)	187, 548, 1042
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
PpuMI	RGGWCCY	1 cut(s)	252
Psp1406I	AACGTT	1 cut(s)	199
Psp5II	RGGWCCY	1 cut(s)	252
PspFI	CCCAGC	1 cut(s)	145
PspN4I	GGNNCC	6 cut(s)	61, 107, 253, 254, 291, 705
PspPI	GGNCC	4 cut(s)	106, 252, 435, 562
PspPPI	RGGWCCY	1 cut(s)	252
PsrI	GAACNNNNNNTAC	2 cut(s)	83, 115
PstI	CTGCAG	3 cut(s)	79, 677, 961
PstNI	CAGNNNCTG	1 cut(s)	145
PsyI	GACNNNGTC	1 cut(s)	560
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	2 cut(s)	443, 1005
SapI	GCTCTTC	1 cut(s)	274
SaqAI	TTAA	3 cut(s)	351, 489, 923
SatI	GCNGC	3 cut(s)	186, 547, 1041
Sau3AI	GATC	2 cut(s)	114, 830
Sau96I	GGNCC	4 cut(s)	106, 252, 435, 562
SchI	GAGTC	1 cut(s)	217
SduI	GDGCHC	2 cut(s)	852, 984
SfaNI	GCATC	3 cut(s)	672, 1002, 1021
SfcI	CTRYAG	3 cut(s)	75, 673, 957
SinI	GGWCC	4 cut(s)	106, 252, 435, 562
SmiMI	CAYNNNNRTG	2 cut(s)	443, 1005
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	309, 834
SsiI	CCGC	1 cut(s)	778
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	2 cut(s)	273, 1028
StyI	CCWWGG	4 cut(s)	260, 438, 565, 1079
TaaI	ACNGT	4 cut(s)	50, 64, 286, 1054
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	3 cut(s)	19, 891, 1011
TasI	AATT	2 cut(s)	309, 834
TfiI	GAWTC	1 cut(s)	866
Tru1I	TTAA	3 cut(s)	351, 489, 923
Tru9I	TTAA	3 cut(s)	351, 489, 923
TscAI	CASTG	3 cut(s)	55, 715, 961
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	3 cut(s)	185, 546, 1040
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	2 cut(s)	879, 976
TspRI	CASTG	3 cut(s)	55, 715, 961
Tth111I	GACNNNGTC	1 cut(s)	560
VneI	GTGCAC	1 cut(s)	980
VpaK11BI	GGWCC	4 cut(s)	106, 252, 435, 562
XceI	RCATGY	1 cut(s)	1004
XspI	CTAG	2 cut(s)	273, 1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.