RchiOBHm_Chr6g0259651

Cell division cycle-associated 7-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001920
Physical Location & Seq
Reverse (-)
14904115 .. 14904979
865 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23282

Sequence Viewer

Length: 393 bp
ATGCTTTCTTTCAGGCAGAAAACTCTTGGTCAGCATACACATTGCTGCAAATGTGACTTGGTCCAAGGGCAGTTTTGTGGAGATTGCTTATACATGAGATATGGAGAGAATGTGATCGAAGCCAGCAAAAATCCTGATTGGGTTTGCCCTGTTTGTCGGGGCATTTGCAACTGCAGTCTTTGCAGTAAAGAAAAAGGGTGGGAGCCCACTGGTAATCTGTATAGGAAGTTGAATGCTTGGTATTTGCTTGCATTACTTAGTATCCCTATTTTTCTCTTTGAGAAAAGAGAGAAAATAATGCATTACAAGTTTACAACACACACAGCCACACACATACACACAAATGGAAAGGAAAAACCAAGTCAATATTCAACATGGGGAACCAATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

130

Amino Acids

15.0

Weight (kDa)

8.82

Isoelectric Point (pI)

22.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 5 - 78 2.5e-28 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 232, 372
AjuI GAANNNNNNNTTGG 2 cut(s) 352, 384
ApeKI GCWGC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 61
AvaII GGWCC 1 cut(s) 61
BanII GRGCYC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 32
BciVI GTATCC 1 cut(s) 272
BfmI CTRYAG 1 cut(s) 172
BfuI GTATCC 1 cut(s) 272
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 2 cut(s) 204, 382
BsaJI CCNNGG 1 cut(s) 64
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bse1I ACTGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 64
BseMI GCAATG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 214
BseXI GCAGC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 114
BspLI GGNNCC 2 cut(s) 204, 382
BspMAI CTGCAG 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 40
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 64
BstAPI GCANNNNNTGC 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 124, 249
BstDEI CTNAG 1 cut(s) 257
BstKTI GATC 1 cut(s) 117
BstMBI GATC 1 cut(s) 114
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstSFI CTRYAG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 32
BsuI GTATCC 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 207
Cac8I GCNNGC 2 cut(s) 124, 249
Cfr13I GGNCC 1 cut(s) 61
CviAII CATG 2 cut(s) 94, 375
CviJI RGCY 4 cut(s) 122, 205, 326, 390
CviKI_1 RGCY 4 cut(s) 122, 205, 326, 390
DdeI CTNAG 1 cut(s) 257
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 64
EcoT22I ATGCAT 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 2 cut(s) 97, 378
FaiI YATR 7 cut(s) 36, 91, 95, 102, 222, 335, 376
FatI CATG 2 cut(s) 93, 374
Fnu4HI GCNGC 1 cut(s) 46
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 46
GluI GCNGC 1 cut(s) 46
Hin1II CATG 2 cut(s) 97, 378
Hpy166II GTNNAC 1 cut(s) 312
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 1 cut(s) 312
HpyCH4V TGCA 6 cut(s) 48, 168, 174, 183, 251, 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 1 cut(s) 257
Hsp92II CATG 2 cut(s) 97, 378
Kzo9I GATC 1 cut(s) 114
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 4 cut(s) 136, 147, 162, 195
Lsp1109I GCAGC 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 53
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 207
Mph1103I ATGCAT 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 342
Mva1269I GAATGC 1 cut(s) 238
MwoI GCNNNNNNNGC 1 cut(s) 180
NdeII GATC 1 cut(s) 114
NlaIII CATG 2 cut(s) 97, 378
NlaIV GGNNCC 2 cut(s) 204, 382
NmuCI GTSAC 1 cut(s) 53
NsiI ATGCAT 1 cut(s) 303
PctI GAATGC 1 cut(s) 238
PflFI GACNNNGTC 1 cut(s) 59
PkrI GCNGC 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 204, 382
PspPI GGNCC 1 cut(s) 61
PstI CTGCAG 1 cut(s) 176
PsyI GACNNNGTC 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 342
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 1 cut(s) 114
Sau96I GGNCC 1 cut(s) 61
SduI GDGCHC 1 cut(s) 207
SfcI CTRYAG 1 cut(s) 172
SinI GGWCC 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 342
SspI AATATT 1 cut(s) 368
StyI CCWWGG 1 cut(s) 64
TaqI TCGA 1 cut(s) 117
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 1 cut(s) 45
Tsp45I GTSAC 1 cut(s) 53
TspRI CASTG 1 cut(s) 214
Tth111I GACNNNGTC 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 61
Zsp2I ATGCAT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.